Wall clock time and date at job start Tue Mar 31 2020 06:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35640 * 117.00183 * 2 1 4 4 C 1.40767 * 120.33001 * 0.02562 * 3 2 1 5 5 C 1.35010 * 120.04464 * 179.72242 * 4 3 2 6 6 N 1.36028 * 120.85953 * 0.22937 * 5 4 3 7 7 C 1.36661 * 120.88622 * 0.02562 * 6 5 4 8 8 C 1.37973 * 120.33570 * 180.27120 * 3 2 1 9 9 N 1.33333 * 108.61196 * 180.02562 * 7 6 5 10 10 C 1.32322 * 109.84734 * 359.97438 * 9 7 6 11 11 C 1.38511 * 108.26380 * 0.02562 * 10 9 7 12 12 C 1.41641 * 126.78616 * 179.97438 * 11 10 9 13 13 O 1.21802 * 119.99455 * 174.92465 * 12 11 10 14 14 N 1.34770 * 120.00520 * 354.92408 * 12 11 10 15 15 C 1.46503 * 120.00278 * 185.04616 * 14 12 11 16 16 C 1.52997 * 109.47472 * 180.02562 * 15 14 12 17 17 H 1.08998 * 112.74198 * 303.77100 * 16 15 14 18 18 C 1.53497 * 113.47136 * 172.94265 * 16 15 14 19 19 C 1.53495 * 83.34644 * 219.15740 * 18 16 15 20 20 N 1.47067 * 87.98715 * 26.06461 * 19 18 16 21 21 C 1.36937 * 136.05606 * 152.90940 * 20 19 18 22 22 H 1.08003 * 119.99887 * 179.97438 * 21 20 19 23 23 C 1.38808 * 120.00107 * 359.96034 * 21 20 19 24 24 N 1.31615 * 120.00083 * 359.97438 * 23 21 20 25 25 Si 1.86804 * 119.99923 * 179.97438 * 23 21 20 26 26 H 1.48495 * 109.47241 * 59.99702 * 25 23 21 27 27 H 1.48507 * 109.46873 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47149 * 299.99656 * 25 23 21 29 29 H 1.09000 * 109.46652 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46776 * 299.99296 * 1 2 3 31 31 H 1.08990 * 109.47196 * 59.99610 * 1 2 3 32 32 H 1.08000 * 119.97689 * 359.97438 * 4 3 2 33 33 H 1.07994 * 119.56657 * 180.25292 * 5 4 3 34 34 H 1.08002 * 120.39118 * 359.97438 * 8 3 2 35 35 H 1.08000 * 125.86710 * 179.97438 * 10 9 7 36 36 H 0.97000 * 120.00465 * 5.05561 * 14 12 11 37 37 H 1.08992 * 109.47382 * 300.00686 * 15 14 12 38 38 H 1.09008 * 109.46495 * 60.00514 * 15 14 12 39 39 H 1.09000 * 114.20070 * 332.74393 * 18 16 15 40 40 H 1.08998 * 114.20331 * 105.56562 * 18 16 15 41 41 H 1.09003 * 113.46336 * 271.28977 * 19 18 16 42 42 H 1.08991 * 113.46992 * 140.84971 * 19 18 16 43 43 H 0.97000 * 120.00061 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0449 1.2085 0.0000 4 6 1.2851 2.3935 0.0005 5 6 1.9040 3.5934 0.0062 6 7 3.2617 3.6781 0.0068 7 6 4.0349 2.5513 0.0011 8 6 3.4223 1.2888 -0.0056 9 7 5.3176 2.9154 0.0036 10 6 5.4099 4.2354 0.0102 11 6 4.1280 4.7602 0.0126 12 6 3.7729 6.1313 0.0199 13 8 2.6030 6.4578 -0.0721 14 7 4.7292 7.0747 0.1285 15 6 4.3556 8.4863 0.2473 16 6 5.6199 9.3412 0.3547 17 1 6.2627 9.0407 1.1821 18 6 5.3430 10.8504 0.3109 19 6 6.6219 10.8796 -0.5374 20 7 6.3374 9.4885 -0.9206 21 6 6.6178 8.6842 -1.9928 22 1 6.2693 7.6620 -2.0068 23 6 7.3496 9.1826 -3.0618 24 7 7.7736 10.4285 -3.0451 25 14 7.7326 8.0851 -4.5241 26 1 6.4638 7.6233 -5.1422 27 1 8.5202 8.8500 -5.5242 28 1 8.5179 6.9099 -4.0688 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 0.2063 2.3428 0.0005 33 1 1.3135 4.4976 0.0107 34 1 4.0219 0.3905 -0.0097 35 1 6.3271 4.8056 0.0139 36 1 5.6649 6.8191 0.1278 37 1 3.7877 8.7872 -0.6329 38 1 3.7449 8.6266 1.1393 39 1 4.4391 11.1232 -0.2337 40 1 5.4349 11.3497 1.2754 41 1 7.5317 10.9897 0.0528 42 1 6.5731 11.5785 -1.3723 43 1 8.2853 10.7767 -3.7920 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038515896.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:26 Heat of formation + Delta-G solvation = 60.241229 kcal Electronic energy + Delta-G solvation = -27585.678485 eV Core-core repulsion = 23634.178626 eV Total energy + Delta-G solvation = -3951.499859 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.03327 -40.92538 -40.46652 -39.60611 -37.60920 -35.55215 -34.28225 -34.22324 -31.65878 -30.97931 -29.90272 -28.89651 -27.78937 -25.37136 -25.26108 -24.64745 -23.37232 -23.10744 -21.70034 -20.98167 -19.62579 -19.06942 -18.53321 -18.03266 -17.59401 -17.48612 -17.04239 -16.83076 -16.61869 -16.07473 -15.97832 -15.61657 -15.54174 -15.36059 -15.01598 -14.73250 -14.45892 -14.31544 -13.61990 -13.54416 -13.32666 -13.13109 -12.93732 -12.72588 -12.69367 -12.57755 -12.40815 -12.33509 -11.85379 -11.64863 -11.57077 -11.18248 -11.10275 -10.90543 -10.80236 -10.15893 -10.05011 -8.87020 -8.79876 -7.86115 -5.17056 -0.50176 -0.30034 1.13830 1.18236 1.44931 1.46104 1.51466 1.96507 2.25773 2.30232 2.35424 2.49206 3.19713 3.31896 3.36372 3.41040 3.47952 3.78336 3.84814 3.91174 3.97008 4.14796 4.24880 4.33155 4.38577 4.42229 4.47672 4.65679 4.71417 4.74215 4.79769 4.83538 4.91273 5.08372 5.09194 5.13368 5.25914 5.35594 5.43718 5.61722 5.75514 5.77579 5.99634 6.10860 6.42715 6.56435 6.95950 7.11639 7.66388 8.65867 9.31429 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.016362 B = 0.002936 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.820262 B = 9533.806054 C =10526.375444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.008 3.992 2 O -0.312 6.312 3 C 0.176 3.824 4 C -0.192 4.192 5 C 0.100 3.900 6 N -0.347 5.347 7 C 0.271 3.729 8 C -0.166 4.166 9 N -0.529 5.529 10 C 0.122 3.878 11 C -0.176 4.176 12 C 0.597 3.403 13 O -0.595 6.595 14 N -0.700 5.700 15 C 0.135 3.865 16 C 0.133 3.867 17 H 0.072 0.928 18 C -0.133 4.133 19 C 0.142 3.858 20 N -0.630 5.630 21 C -0.205 4.205 22 H 0.086 0.914 23 C -0.068 4.068 24 N -0.953 5.953 25 Si 0.962 3.038 26 H -0.287 1.287 27 H -0.297 1.297 28 H -0.274 1.274 29 H 0.125 0.875 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.202 0.798 33 H 0.181 0.819 34 H 0.171 0.829 35 H 0.209 0.791 36 H 0.408 0.592 37 H 0.044 0.956 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.101 0.899 41 H 0.023 0.977 42 H 0.035 0.965 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.066 -17.925 11.029 26.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.223 6.223 3 C 0.122 3.878 4 C -0.212 4.212 5 C -0.025 4.025 6 N -0.018 5.018 7 C 0.032 3.968 8 C -0.187 4.187 9 N -0.249 5.249 10 C -0.038 4.038 11 C -0.288 4.288 12 C 0.387 3.613 13 O -0.480 6.480 14 N -0.349 5.349 15 C 0.010 3.990 16 C 0.027 3.973 17 H 0.090 0.910 18 C -0.172 4.172 19 C 0.016 3.984 20 N -0.356 5.356 21 C -0.333 4.333 22 H 0.104 0.896 23 C -0.261 4.261 24 N -0.603 5.603 25 Si 0.792 3.208 26 H -0.213 1.213 27 H -0.223 1.223 28 H -0.200 1.200 29 H 0.143 0.857 30 H 0.095 0.905 31 H 0.092 0.908 32 H 0.219 0.781 33 H 0.198 0.802 34 H 0.188 0.812 35 H 0.226 0.774 36 H 0.244 0.756 37 H 0.063 0.937 38 H 0.102 0.898 39 H 0.098 0.902 40 H 0.119 0.881 41 H 0.041 0.959 42 H 0.054 0.946 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -16.039 -18.457 10.666 26.677 hybrid contribution 0.380 0.443 -1.230 1.362 sum -15.658 -18.014 9.436 25.665 Atomic orbital electron populations 1.23613 0.74994 1.06624 1.03276 1.86071 1.24499 1.24566 1.87191 1.18913 0.91117 0.85461 0.92269 1.21515 1.03475 0.88812 1.07440 1.22141 0.80823 1.01989 0.97561 1.42677 1.06840 1.07634 1.44684 1.20966 0.86840 0.87573 1.01411 1.19553 0.92518 0.94252 1.12421 1.70568 1.15057 1.13436 1.25866 1.23586 0.96174 0.90371 0.93688 1.19715 0.90508 0.88624 1.29978 1.15476 0.85386 0.83905 0.76483 1.90734 1.19292 1.83729 1.54210 1.45556 1.09520 1.06753 1.73115 1.21651 0.97586 0.78690 1.01039 1.22589 0.91249 0.94521 0.88945 0.91042 1.23480 0.98281 0.94761 1.00671 1.22057 0.94218 0.87258 0.94858 1.46001 1.62905 1.11224 1.15468 1.19145 1.26639 0.93918 0.93623 0.89605 1.25458 1.01807 0.97748 1.01096 1.69987 1.42924 1.15199 1.32180 0.85386 0.77526 0.78169 0.79729 1.21338 1.22328 1.20007 0.85653 0.90507 0.90769 0.78099 0.80168 0.81150 0.77421 0.75554 0.93726 0.89778 0.90214 0.88087 0.95875 0.94648 0.94593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.82 113.37 1.11 1.15 16 2 O -0.31 -4.13 10.49 -89.54 -0.94 -5.07 16 3 C 0.18 2.97 6.72 22.83 0.15 3.13 16 4 C -0.19 -2.80 8.99 22.15 0.20 -2.60 16 5 C 0.10 2.22 10.49 83.30 0.87 3.09 16 6 N -0.35 -9.95 2.97 -344.36 -1.02 -10.97 16 7 C 0.27 7.69 7.76 133.86 1.04 8.73 16 8 C -0.17 -3.65 10.09 22.72 0.23 -3.42 16 9 N -0.53 -16.62 11.25 -192.85 -2.17 -18.79 16 10 C 0.12 3.66 11.32 84.68 0.96 4.62 16 11 C -0.18 -5.63 6.83 38.97 0.27 -5.37 16 12 C 0.60 20.79 7.59 85.08 0.65 21.43 16 13 O -0.60 -23.13 15.35 -4.68 -0.07 -23.20 16 14 N -0.70 -23.26 5.31 -472.08 -2.51 -25.76 16 15 C 0.13 4.59 5.53 86.38 0.48 5.06 16 16 C 0.13 4.75 4.10 41.79 0.17 4.92 16 17 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 18 C -0.13 -4.45 8.03 30.93 0.25 -4.20 16 19 C 0.14 6.40 7.39 83.18 0.62 7.01 16 20 N -0.63 -30.11 3.65 -713.85 -2.61 -32.72 16 21 C -0.20 -10.94 10.55 84.03 0.89 -10.06 16 22 H 0.09 4.36 7.50 -2.91 -0.02 4.34 16 23 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 24 N -0.95 -57.51 11.51 21.65 0.25 -57.26 16 25 Si 0.96 46.43 29.55 68.60 2.03 48.46 16 26 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 27 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 28 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 29 H 0.13 0.07 8.14 -2.39 -0.02 0.05 16 30 H 0.08 0.11 7.68 -2.39 -0.02 0.09 16 31 H 0.07 0.15 7.68 -2.39 -0.02 0.14 16 32 H 0.20 1.14 6.39 -2.91 -0.02 1.12 16 33 H 0.18 4.02 6.79 -2.91 -0.02 4.00 16 34 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 35 H 0.21 5.16 7.37 -2.91 -0.02 5.14 16 36 H 0.41 12.79 7.16 -92.71 -0.66 12.12 16 37 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.08 2.48 8.14 -2.38 -0.02 2.47 16 39 H 0.08 2.69 8.12 -2.39 -0.02 2.67 16 40 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.03 1.84 7.12 -2.39 -0.02 1.83 16 43 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 Total: -1.00 -76.99 363.15 1.70 -75.29 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.39 Total: 19.94 kcal Atomic # 6 Polarization: 21.74 SS G_CDS: 8.34 Total: 30.08 kcal Atomic # 7 Polarization: -137.45 SS G_CDS: -8.06 Total: -145.51 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -1.01 Total: -28.27 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -76.99 1.70 -75.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038515896.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.533 kcal (2) G-P(sol) polarization free energy of solvation -76.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds