Wall clock time and date at job start Tue Mar 31 2020 06:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35901 * 116.99718 * 2 1 4 4 C 1.36884 * 120.42227 * 0.02562 * 3 2 1 5 5 C 1.40112 * 119.35583 * 179.97438 * 4 3 2 6 6 C 1.35160 * 120.37561 * 359.97438 * 5 4 3 7 7 N 1.36365 * 120.81029 * 0.04181 * 6 5 4 8 8 N 1.40023 * 131.99026 * 179.97438 * 7 6 5 9 9 C 1.30766 * 109.59292 * 179.73303 * 8 7 6 10 10 C 1.40525 * 108.71954 * 0.41150 * 9 8 7 11 11 C 1.46599 * 126.57221 * 179.85537 * 10 9 8 12 12 O 1.21715 * 119.99748 * 179.68843 * 11 10 9 13 13 N 1.34771 * 119.99873 * 359.69082 * 11 10 9 14 14 C 1.46505 * 119.99622 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47212 * 179.97438 * 14 13 11 16 16 H 1.09002 * 112.96693 * 306.67860 * 15 14 13 17 17 C 1.53944 * 113.77224 * 175.00107 * 15 14 13 18 18 C 1.53950 * 86.29079 * 222.09231 * 17 15 14 19 19 N 1.47585 * 113.77049 * 78.49995 * 15 14 13 20 20 C 1.36932 * 134.49495 * 318.94949 * 19 15 14 21 21 H 1.08007 * 119.99670 * 359.97438 * 20 19 15 22 22 C 1.38814 * 120.00453 * 179.97438 * 20 19 15 23 23 N 1.31623 * 119.99581 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00371 * 179.97438 * 22 20 19 25 25 H 1.48504 * 109.46895 * 60.00085 * 24 22 20 26 26 H 1.48497 * 109.47213 * 179.97438 * 24 22 20 27 27 H 1.48490 * 109.47229 * 300.00375 * 24 22 20 28 28 C 1.36484 * 120.10530 * 359.95428 * 7 6 5 29 29 H 1.09006 * 109.46617 * 60.00210 * 1 2 3 30 30 H 1.09001 * 109.46918 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47131 * 300.00297 * 1 2 3 32 32 H 1.07995 * 120.32155 * 359.97438 * 4 3 2 33 33 H 1.07996 * 119.80902 * 179.97438 * 5 4 3 34 34 H 1.08001 * 119.59798 * 179.97438 * 6 5 4 35 35 H 1.07998 * 125.63995 * 180.26695 * 9 8 7 36 36 H 0.96996 * 120.00772 * 359.97438 * 13 11 10 37 37 H 1.09002 * 109.47068 * 299.99729 * 14 13 11 38 38 H 1.09001 * 109.47372 * 59.99816 * 14 13 11 39 39 H 1.09005 * 113.73705 * 336.43429 * 17 15 14 40 40 H 1.08994 * 113.74699 * 107.63859 * 17 15 14 41 41 H 1.08997 * 113.77044 * 137.90682 * 18 17 15 42 42 H 1.08997 * 113.76603 * 269.19409 * 18 17 15 43 43 H 0.97001 * 120.00214 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.3089 2.3643 0.0005 5 6 1.9680 3.6007 0.0011 6 6 3.3185 3.6553 0.0016 7 7 4.0637 2.5132 0.0007 8 7 5.4472 2.2973 0.0005 9 6 5.6905 1.0125 0.0053 10 6 4.4668 0.3217 -0.0006 11 6 4.2849 -1.1330 -0.0010 12 8 3.1635 -1.6060 -0.0008 13 7 5.3595 -1.9464 -0.0016 14 6 5.1777 -3.4001 -0.0026 15 6 6.5457 -4.0852 -0.0037 16 1 7.1941 -3.7390 -0.8086 17 6 6.4722 -5.6180 0.1180 18 6 7.6554 -5.4972 1.0954 19 7 7.1988 -4.1118 1.3195 20 6 7.3287 -3.2123 2.3438 21 1 6.8873 -2.2302 2.2593 22 6 8.0278 -3.5627 3.4907 23 7 8.5654 -4.7597 3.5939 24 14 8.2057 -2.3355 4.8877 25 1 6.8599 -1.9579 5.3892 26 1 8.9895 -2.9497 5.9893 27 1 8.9084 -1.1235 4.3954 28 6 3.4489 1.2947 0.0003 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 0.2298 2.3218 0.0005 33 1 1.3937 4.5153 0.0011 34 1 3.8136 4.6151 0.0016 35 1 6.6700 0.5576 0.0105 36 1 6.2532 -1.5695 -0.0021 37 1 4.6228 -3.6975 0.8873 38 1 4.6227 -3.6963 -0.8927 39 1 5.5541 -5.9778 0.5827 40 1 6.7154 -6.1438 -0.8053 41 1 7.5667 -6.1365 1.9737 42 1 8.6311 -5.5677 0.6148 43 1 9.0536 -5.0048 4.3954 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038815194.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:18 Heat of formation + Delta-G solvation = 100.987738 kcal Electronic energy + Delta-G solvation = -28153.995553 eV Core-core repulsion = 24204.262595 eV Total energy + Delta-G solvation = -3949.732958 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.31315 -39.34409 -38.91660 -37.73510 -36.67352 -33.81346 -32.29974 -32.08781 -31.08764 -29.15947 -27.87063 -27.62357 -27.17932 -23.61969 -23.49861 -23.30207 -22.23187 -21.72386 -19.99717 -19.10025 -18.27378 -17.80162 -16.89432 -16.67508 -16.33456 -16.16850 -15.58924 -15.30659 -15.17532 -15.08176 -14.53995 -14.26284 -13.94427 -13.64327 -13.56827 -13.08455 -12.84499 -12.77613 -12.45052 -12.22614 -11.81311 -11.47100 -11.44271 -11.33429 -11.18068 -11.02497 -10.93940 -10.68105 -10.49917 -9.92225 -9.81094 -9.70646 -9.57108 -9.49981 -9.19012 -8.73725 -8.38705 -7.52566 -6.83287 -5.70767 -3.02664 0.49890 0.83580 1.89676 2.20695 3.03337 3.10358 3.42957 3.47947 3.48397 3.69717 3.89924 4.14635 4.32813 4.44405 4.49708 4.59358 4.89088 4.98953 4.99901 5.12431 5.18859 5.21272 5.39462 5.45465 5.49700 5.62618 5.70263 5.77719 5.85091 5.90357 6.00290 6.20344 6.26026 6.42515 6.47517 6.60555 6.69063 6.82268 7.08094 7.09719 7.31071 7.34026 7.47846 7.65182 8.04572 8.12799 8.84325 9.10593 9.77246 10.65759 11.46056 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.013428 B = 0.003571 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.675774 B = 7838.001707 C = 8832.928839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.252 6.252 3 C 0.158 3.842 4 C -0.210 4.210 5 C -0.116 4.116 6 C 0.060 3.940 7 N -0.246 5.246 8 N -0.307 5.307 9 C 0.110 3.890 10 C -0.273 4.273 11 C 0.585 3.415 12 O -0.533 6.533 13 N -0.714 5.714 14 C 0.129 3.871 15 C 0.126 3.874 16 H 0.049 0.951 17 C -0.156 4.156 18 C 0.159 3.841 19 N -0.602 5.602 20 C -0.216 4.216 21 H 0.079 0.921 22 C -0.007 4.007 23 N -0.921 5.921 24 Si 0.905 3.095 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.286 1.286 28 C 0.136 3.864 29 H 0.054 0.946 30 H 0.106 0.894 31 H 0.055 0.945 32 H 0.146 0.854 33 H 0.157 0.843 34 H 0.171 0.829 35 H 0.203 0.797 36 H 0.398 0.602 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.026 0.974 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.457 13.878 -10.638 22.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.161 6.161 3 C 0.108 3.892 4 C -0.234 4.234 5 C -0.137 4.137 6 C -0.065 4.065 7 N -0.012 5.012 8 N -0.129 5.129 9 C -0.069 4.069 10 C -0.288 4.288 11 C 0.371 3.629 12 O -0.410 6.410 13 N -0.364 5.364 14 C 0.004 3.996 15 C 0.018 3.982 16 H 0.066 0.934 17 C -0.195 4.195 18 C 0.034 3.966 19 N -0.328 5.328 20 C -0.344 4.344 21 H 0.097 0.903 22 C -0.203 4.203 23 N -0.569 5.569 24 Si 0.736 3.264 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.013 3.987 29 H 0.073 0.927 30 H 0.124 0.876 31 H 0.073 0.927 32 H 0.164 0.836 33 H 0.174 0.826 34 H 0.188 0.812 35 H 0.219 0.781 36 H 0.232 0.768 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.091 0.909 42 H 0.043 0.957 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.401 14.539 -10.304 22.912 hybrid contribution 0.206 0.407 0.897 1.006 sum -14.195 14.946 -9.407 22.658 Atomic orbital electron populations 1.23192 0.78697 1.04628 1.00807 1.86664 1.20436 1.23000 1.86042 1.17998 0.88978 0.86644 0.95544 1.21208 1.01104 0.91299 1.09744 1.20546 0.92015 0.98849 1.02306 1.21373 0.91048 0.89021 1.05027 1.45857 1.06045 1.04347 1.44969 1.77627 0.86250 1.18245 1.30811 1.24170 0.99384 0.89943 0.93413 1.19956 0.90746 0.94323 1.23782 1.16857 0.84940 0.84201 0.76869 1.90821 1.23299 1.76478 1.50439 1.45689 1.08492 1.07144 1.75080 1.21680 0.98321 0.78298 1.01261 1.22509 0.91575 0.94004 0.90067 0.93350 1.23770 1.01353 0.94870 0.99493 1.22190 0.92221 0.86994 0.95239 1.46058 1.61761 1.13191 1.11812 1.18914 1.28466 0.94294 0.92709 0.90349 1.24730 1.00497 0.96987 0.98136 1.69808 1.40070 1.18834 1.28140 0.86303 0.77641 0.80326 0.82151 1.21230 1.21622 1.21229 1.18295 0.91044 0.86626 1.02754 0.92749 0.87615 0.92677 0.83650 0.82570 0.81193 0.78085 0.76817 0.91093 0.92330 0.90543 0.92886 0.90896 0.95653 0.93731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.82 101.05 0.99 1.19 16 2 O -0.25 -3.71 7.44 -42.97 -0.32 -4.03 16 3 C 0.16 2.16 6.70 -39.20 -0.26 1.90 16 4 C -0.21 -1.98 9.09 -39.37 -0.36 -2.34 16 5 C -0.12 -0.89 9.97 -39.97 -0.40 -1.29 16 6 C 0.06 0.58 11.17 -16.63 -0.19 0.39 16 7 N -0.25 -3.41 3.86 -10.44 -0.04 -3.45 16 8 N -0.31 -4.59 12.58 30.75 0.39 -4.20 16 9 C 0.11 1.62 11.44 -17.14 -0.20 1.43 16 10 C -0.27 -4.59 6.17 -104.69 -0.65 -5.23 16 11 C 0.58 10.96 7.78 -12.89 -0.10 10.86 16 12 O -0.53 -11.18 13.93 -18.37 -0.26 -11.44 16 13 N -0.71 -12.75 5.52 -61.64 -0.34 -13.09 16 14 C 0.13 2.41 5.54 -4.04 -0.02 2.38 16 15 C 0.13 2.45 4.33 -66.86 -0.29 2.16 16 16 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 17 C -0.16 -2.88 7.86 -25.80 -0.20 -3.09 16 18 C 0.16 3.68 7.52 -2.97 -0.02 3.65 16 19 N -0.60 -14.79 3.57 -170.71 -0.61 -15.40 16 20 C -0.22 -5.87 10.51 -15.06 -0.16 -6.03 16 21 H 0.08 2.05 7.80 -52.48 -0.41 1.65 16 22 C -0.01 -0.20 5.50 -17.43 -0.10 -0.30 16 23 N -0.92 -27.28 11.38 55.49 0.63 -26.65 16 24 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 28 C 0.14 2.12 6.77 -83.96 -0.57 1.55 16 29 H 0.05 0.37 7.68 -51.93 -0.40 -0.03 16 30 H 0.11 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.40 7.68 -51.93 -0.40 0.00 16 32 H 0.15 0.94 6.33 -52.49 -0.33 0.61 16 33 H 0.16 0.59 8.06 -52.49 -0.42 0.16 16 34 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.20 2.40 7.46 -52.49 -0.39 2.01 16 36 H 0.40 6.61 7.39 -40.82 -0.30 6.31 16 37 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.07 1.88 7.15 -51.93 -0.37 1.51 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 362.20 15.07 5.46 5.46 Total: -1.00 -35.99 362.20 -8.17 -44.16 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.54 Total: 3.96 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: -2.51 Total: 7.24 kcal Atomic # 7 Polarization: -62.82 SS G_CDS: 0.03 Total: -62.80 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.58 Total: -15.47 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.99 -8.17 -44.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038815194.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.145 kcal (2) G-P(sol) polarization free energy of solvation -35.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds