Wall clock time and date at job start Tue Mar 31 2020 06:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.36002 * 117.00227 * 2 1 4 4 C 1.40512 * 119.89872 * 359.97438 * 3 2 1 5 5 C 1.36388 * 119.38423 * 180.02562 * 4 3 2 6 6 C 1.40088 * 119.34375 * 359.97438 * 5 4 3 7 7 C 1.40959 * 132.78772 * 179.97438 * 6 5 4 8 8 C 1.46546 * 126.58592 * 0.02562 * 7 6 5 9 9 O 1.21727 * 119.99509 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00477 * 179.97438 * 8 7 6 11 11 C 1.46495 * 120.00220 * 179.97438 * 10 8 7 12 12 C 1.52997 * 109.47225 * 179.97438 * 11 10 8 13 13 H 1.09001 * 112.73749 * 56.24613 * 12 11 10 14 14 C 1.53492 * 113.46884 * 187.06005 * 12 11 10 15 15 C 1.53492 * 83.34513 * 140.84952 * 14 12 11 16 16 N 1.47065 * 113.46718 * 285.49649 * 12 11 10 17 17 C 1.36935 * 136.05983 * 38.06701 * 16 12 11 18 18 H 1.08003 * 119.99819 * 359.97438 * 17 16 12 19 19 C 1.38814 * 120.00312 * 179.97438 * 17 16 12 20 20 N 1.31618 * 119.99853 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00191 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46980 * 89.99888 * 21 19 17 23 23 H 1.48497 * 109.46945 * 209.99954 * 21 19 17 24 24 H 1.48500 * 109.46867 * 330.00205 * 21 19 17 25 25 C 1.40510 * 106.83725 * 180.02562 * 7 6 5 26 26 N 1.30774 * 108.73600 * 0.02562 * 25 7 6 27 27 N 1.36502 * 120.31769 * 0.02562 * 6 5 4 28 28 C 1.35631 * 119.90166 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47127 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47054 * 300.00723 * 1 2 3 31 31 H 1.08997 * 109.47116 * 60.00536 * 1 2 3 32 32 H 1.08002 * 120.30985 * 359.97438 * 4 3 2 33 33 H 1.08000 * 120.33259 * 180.02562 * 5 4 3 34 34 H 0.97001 * 119.99712 * 359.97438 * 10 8 7 35 35 H 1.08996 * 109.47317 * 300.00389 * 11 10 8 36 36 H 1.09001 * 109.46692 * 59.99921 * 11 10 8 37 37 H 1.09002 * 114.21229 * 254.43735 * 14 12 11 38 38 H 1.09003 * 114.20649 * 27.26385 * 14 12 11 39 39 H 1.09004 * 113.47003 * 219.15050 * 15 14 12 40 40 H 1.08996 * 113.46959 * 88.71622 * 15 14 12 41 41 H 0.97005 * 120.00128 * 179.97438 * 20 19 17 42 42 H 1.08000 * 125.63910 * 179.97438 * 25 7 6 43 43 H 1.07999 * 119.68536 * 0.02562 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2792 2.3889 -0.0005 5 6 1.9093 3.5985 -0.0011 6 6 3.3095 3.6431 -0.0005 7 6 4.2335 4.7076 -0.0013 8 6 3.9175 6.1386 -0.0025 9 8 2.7569 6.5055 -0.0033 10 7 4.9119 7.0484 -0.0026 11 6 4.5959 8.4789 -0.0043 12 6 5.8944 9.2880 -0.0035 13 1 6.5484 9.0359 -0.8382 14 6 5.6740 10.7973 0.1679 15 6 6.9285 10.6998 1.0469 16 7 6.5804 9.2930 1.2974 17 6 6.7985 8.3869 2.3007 18 1 6.4099 7.3828 2.2153 19 6 7.5189 8.7588 3.4274 20 7 7.9929 9.9823 3.5312 21 14 7.8170 7.5225 4.7957 22 1 9.0817 6.7897 4.5337 23 1 7.9180 8.2360 6.0941 24 1 6.6881 6.5591 4.8467 25 6 5.5159 4.1333 -0.0007 26 7 5.3931 2.8314 -0.0002 27 7 4.0358 2.4874 0.0000 28 6 3.4011 1.2804 -0.0005 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 0.2005 2.3363 -0.0014 33 1 1.3346 4.5129 -0.0011 34 1 5.8367 6.7560 -0.0015 35 1 4.0165 8.7219 -0.8950 36 1 4.0150 8.7237 0.8849 37 1 5.8122 11.3758 -0.7456 38 1 4.7661 11.0575 0.7121 39 1 6.8828 11.3238 1.9395 40 1 7.8582 10.8248 0.4919 41 1 8.4960 10.2424 4.3187 42 1 6.4490 4.6772 -0.0014 43 1 3.9827 0.3704 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038829998.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:02 Heat of formation + Delta-G solvation = 99.592569 kcal Electronic energy + Delta-G solvation = -27494.969394 eV Core-core repulsion = 23545.175937 eV Total energy + Delta-G solvation = -3949.793457 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.33331 -39.89194 -39.01533 -37.91654 -36.40771 -33.92037 -33.18492 -32.19212 -30.48666 -29.68228 -28.09539 -27.79495 -26.73604 -24.19550 -23.45539 -23.35610 -22.24627 -21.64674 -20.08540 -19.21711 -18.41798 -18.15606 -17.11674 -16.70701 -16.49426 -16.27865 -15.60983 -15.35471 -15.16159 -14.97491 -14.84540 -14.32807 -14.11800 -14.00442 -13.66570 -13.16014 -12.98874 -12.83716 -12.74597 -12.51749 -11.86236 -11.80803 -11.50549 -11.24630 -11.08769 -10.96929 -10.94965 -10.74404 -10.59525 -10.54992 -9.96442 -9.80982 -9.59970 -9.22294 -9.17957 -8.79383 -8.50924 -7.67512 -6.88261 -5.75440 -3.07801 0.32989 0.82513 1.70674 2.16802 2.94387 2.98955 3.39659 3.45943 3.46977 3.65164 3.80095 4.07282 4.18057 4.30001 4.45700 4.52789 4.68308 4.74817 4.84396 5.01158 5.06934 5.20914 5.24299 5.39874 5.44257 5.58819 5.66636 5.72781 5.81207 5.91682 5.95327 6.15741 6.25251 6.37949 6.43843 6.46218 6.62296 6.76681 6.77681 6.98238 7.24908 7.30901 7.41745 7.59712 7.99244 8.02908 8.69387 9.04701 9.72035 10.64669 11.41849 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015732 B = 0.002960 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.385048 B = 9455.772545 C =10499.246117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.308 6.308 3 C 0.088 3.912 4 C -0.150 4.150 5 C -0.058 4.058 6 C 0.134 3.866 7 C -0.292 4.292 8 C 0.595 3.405 9 O -0.564 6.564 10 N -0.709 5.709 11 C 0.125 3.875 12 C 0.127 3.873 13 H 0.049 0.951 14 C -0.161 4.161 15 C 0.151 3.849 16 N -0.602 5.602 17 C -0.212 4.212 18 H 0.081 0.919 19 C -0.007 4.007 20 N -0.919 5.919 21 Si 0.906 3.094 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.115 3.885 26 N -0.309 5.309 27 N -0.243 5.243 28 C 0.058 3.942 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.151 0.849 33 H 0.168 0.832 34 H 0.401 0.599 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.058 0.942 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.025 0.975 41 H 0.253 0.747 42 H 0.203 0.797 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.606 -15.750 -10.374 23.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.221 6.221 3 C 0.040 3.960 4 C -0.174 4.174 5 C -0.078 4.078 6 C 0.013 3.987 7 C -0.307 4.307 8 C 0.383 3.617 9 O -0.445 6.445 10 N -0.358 5.358 11 C 0.000 4.000 12 C 0.019 3.981 13 H 0.066 0.934 14 C -0.200 4.200 15 C 0.025 3.975 16 N -0.328 5.328 17 C -0.340 4.340 18 H 0.099 0.901 19 C -0.204 4.204 20 N -0.566 5.566 21 Si 0.737 3.263 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C -0.064 4.064 26 N -0.132 5.132 27 N -0.008 5.008 28 C -0.069 4.069 29 H 0.123 0.877 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.168 0.832 33 H 0.185 0.815 34 H 0.235 0.765 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.043 0.957 41 H 0.063 0.937 42 H 0.219 0.781 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -13.432 -16.873 -10.025 23.782 hybrid contribution 0.258 -0.004 0.850 0.888 sum -13.173 -16.876 -9.176 23.293 Atomic orbital electron populations 1.23151 0.77327 1.04489 1.01762 1.86057 1.21957 1.24654 1.89430 1.17833 0.90683 0.85582 1.01919 1.21545 1.01399 0.91348 1.03075 1.20787 0.90770 0.99623 0.96594 1.19283 0.92524 0.86439 1.00494 1.19825 0.91450 0.93546 1.25852 1.16808 0.85174 0.83739 0.76000 1.90715 1.19634 1.81467 1.52683 1.45682 1.09137 1.06744 1.74242 1.21778 0.98359 0.78527 1.01296 1.22421 0.91546 0.93434 0.90676 0.93423 1.23658 1.01236 0.95214 0.99907 1.22028 0.91946 0.87254 0.96223 1.45680 1.62378 1.10308 1.14394 1.18862 1.28721 0.92159 0.94225 0.90111 1.24759 1.00498 0.96759 0.98343 1.69827 1.40708 1.16956 1.29104 0.86205 0.78056 0.80247 0.81839 1.21589 1.21654 1.20631 1.24183 0.98601 0.90703 0.92900 1.77671 0.88582 1.15606 1.31335 1.45633 1.06491 1.04323 1.44327 1.19946 0.90995 0.87974 1.07954 0.87687 0.92224 0.92256 0.83185 0.81482 0.76484 0.92269 0.91095 0.92362 0.90201 0.91021 0.95749 0.93715 0.78095 0.80586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.82 101.05 0.99 1.11 16 2 O -0.31 -2.47 10.48 -19.75 -0.21 -2.67 16 3 C 0.09 0.84 6.63 -39.66 -0.26 0.58 16 4 C -0.15 -1.35 9.04 -39.39 -0.36 -1.71 16 5 C -0.06 -0.70 9.72 -39.55 -0.38 -1.09 16 6 C 0.13 1.98 6.76 -84.06 -0.57 1.41 16 7 C -0.29 -4.67 6.17 -104.66 -0.65 -5.32 16 8 C 0.59 10.65 7.78 -12.91 -0.10 10.55 16 9 O -0.56 -11.28 15.70 5.17 0.08 -11.20 16 10 N -0.71 -12.32 5.32 -61.66 -0.33 -12.65 16 11 C 0.12 2.27 5.52 -4.05 -0.02 2.24 16 12 C 0.13 2.42 4.10 -72.41 -0.30 2.13 16 13 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 14 C -0.16 -2.92 8.03 -26.22 -0.21 -3.13 16 15 C 0.15 3.44 7.39 -8.52 -0.06 3.38 16 16 N -0.60 -14.58 3.65 -177.02 -0.65 -15.23 16 17 C -0.21 -5.68 10.55 -15.06 -0.16 -5.83 16 18 H 0.08 2.07 7.51 -52.48 -0.39 1.68 16 19 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 20 N -0.92 -27.04 11.51 55.49 0.64 -26.40 16 21 Si 0.91 22.21 29.55 -169.99 -5.02 17.18 16 22 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 25 C 0.11 1.67 11.44 -17.15 -0.20 1.47 16 26 N -0.31 -4.65 12.58 30.75 0.39 -4.26 16 27 N -0.24 -3.39 3.86 -10.41 -0.04 -3.43 16 28 C 0.06 0.64 11.10 -16.47 -0.18 0.46 16 29 H 0.10 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.20 7.67 -51.93 -0.40 -0.19 16 31 H 0.06 0.19 7.67 -51.93 -0.40 -0.21 16 32 H 0.15 0.84 6.36 -52.49 -0.33 0.51 16 33 H 0.17 2.03 7.11 -52.49 -0.37 1.66 16 34 H 0.40 6.54 7.29 -40.82 -0.30 6.24 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.44 8.12 -51.93 -0.42 1.02 16 39 H 0.07 1.83 7.13 -51.93 -0.37 1.46 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.20 2.38 7.46 -52.49 -0.39 1.99 16 43 H 0.18 1.58 8.06 -52.49 -0.42 1.16 16 LS Contribution 365.05 15.07 5.50 5.50 Total: -1.00 -34.66 365.05 -7.66 -42.33 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -5.47 Total: 4.86 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -2.55 Total: 5.97 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: 0.01 Total: -61.97 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.13 Total: -13.87 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.66 -7.66 -42.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038829998.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.919 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds