Wall clock time and date at job start Tue Mar 31 2020 06:06:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.36007 * 117.00572 * 2 1 4 4 C 1.40517 * 119.89256 * 0.02562 * 3 2 1 5 5 C 1.36396 * 119.37952 * 179.97438 * 4 3 2 6 6 C 1.40086 * 119.33995 * 359.73521 * 5 4 3 7 7 C 1.40971 * 132.77853 * 179.64887 * 6 5 4 8 8 C 1.46538 * 126.58694 * 0.67116 * 7 6 5 9 9 O 1.21733 * 119.99652 * 359.70643 * 8 7 6 10 10 N 1.34777 * 120.00249 * 179.43542 * 8 7 6 11 11 C 1.46504 * 119.99854 * 180.27559 * 10 8 7 12 12 C 1.52996 * 109.46681 * 179.97438 * 11 10 8 13 13 H 1.08997 * 112.96453 * 306.67166 * 12 11 10 14 14 C 1.53954 * 113.76483 * 174.99949 * 12 11 10 15 15 C 1.53941 * 86.28573 * 222.08783 * 14 12 11 16 16 N 1.47573 * 113.77253 * 78.50350 * 12 11 10 17 17 C 1.36942 * 134.49299 * 318.94385 * 16 12 11 18 18 H 1.07995 * 119.99712 * 359.97438 * 17 16 12 19 19 C 1.38816 * 119.99770 * 179.97438 * 17 16 12 20 20 N 1.31618 * 120.00425 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99693 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47069 * 59.99728 * 21 19 17 23 23 H 1.48496 * 109.47348 * 179.97438 * 21 19 17 24 24 H 1.48509 * 109.47006 * 299.99886 * 21 19 17 25 25 C 1.40510 * 106.83250 * 180.40186 * 7 6 5 26 26 N 1.30780 * 108.73494 * 0.23139 * 25 7 6 27 27 N 1.36493 * 120.32426 * 0.50776 * 6 5 4 28 28 C 1.35631 * 119.90371 * 180.02562 * 3 2 1 29 29 H 1.09009 * 109.46904 * 299.99770 * 1 2 3 30 30 H 1.09000 * 109.47162 * 59.99749 * 1 2 3 31 31 H 1.09003 * 109.47291 * 180.02562 * 1 2 3 32 32 H 1.07991 * 120.31054 * 0.02618 * 4 3 2 33 33 H 1.07990 * 120.32668 * 180.02562 * 5 4 3 34 34 H 0.96990 * 119.99728 * 0.26837 * 10 8 7 35 35 H 1.08998 * 109.46968 * 299.99782 * 11 10 8 36 36 H 1.08997 * 109.47198 * 59.99605 * 11 10 8 37 37 H 1.08998 * 113.74279 * 336.43715 * 14 12 11 38 38 H 1.09000 * 113.73879 * 107.63713 * 14 12 11 39 39 H 1.09005 * 113.76956 * 137.91047 * 15 14 12 40 40 H 1.09000 * 113.77460 * 269.19071 * 15 14 12 41 41 H 0.96998 * 120.00142 * 180.02562 * 20 19 17 42 42 H 1.07999 * 125.63551 * 180.25237 * 25 7 6 43 43 H 1.07998 * 119.68126 * 359.97438 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2791 2.3889 0.0005 5 6 1.9093 3.5985 0.0011 6 6 3.3095 3.6431 0.0067 7 6 4.2336 4.7076 0.0023 8 6 3.9176 6.1385 0.0036 9 8 2.7568 6.5055 0.0034 10 7 4.9119 7.0483 0.0104 11 6 4.5958 8.4788 0.0178 12 6 5.8944 9.2879 0.0252 13 1 6.5705 8.9995 0.8301 14 6 5.6790 10.8079 -0.0895 15 6 6.8701 10.8021 -1.0646 16 7 6.5446 9.3814 -1.2962 17 6 6.7594 8.5029 -2.3245 18 1 6.4110 7.4838 -2.2456 19 6 7.4251 8.9224 -3.4681 20 7 7.8502 10.1643 -3.5640 21 14 7.7187 7.7238 -4.8705 22 1 6.4148 7.2252 -5.3767 23 1 8.4441 8.4134 -5.9674 24 1 8.5303 6.5799 -4.3822 25 6 5.5159 4.1333 0.0029 26 7 5.3930 2.8313 0.0022 27 7 4.0358 2.4874 0.0012 28 6 3.4011 1.2803 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 0.2005 2.3363 0.0014 33 1 1.3346 4.5128 0.0019 34 1 5.8367 6.7559 0.0106 35 1 4.0174 8.7277 -0.8719 36 1 4.0141 8.7178 0.9080 37 1 4.7324 11.0832 -0.5545 38 1 5.8706 11.3494 0.8369 39 1 6.7242 11.4348 -1.9402 40 1 7.8343 10.9607 -0.5815 41 1 8.3150 10.4575 -4.3633 42 1 6.4490 4.6772 0.0040 43 1 3.9826 0.3703 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038830000.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:04 Heat of formation + Delta-G solvation = 96.182733 kcal Electronic energy + Delta-G solvation = -27448.548335 eV Core-core repulsion = 23498.607017 eV Total energy + Delta-G solvation = -3949.941319 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.34349 -39.89764 -38.96852 -37.76267 -36.41602 -33.93395 -33.19338 -32.14623 -30.49538 -29.69238 -28.07007 -27.76809 -26.76554 -24.20429 -23.41671 -23.33204 -22.25771 -21.76070 -20.10027 -19.10916 -18.42145 -18.15612 -17.12388 -16.70808 -16.50124 -16.26617 -15.61753 -15.37019 -15.14941 -14.98350 -14.85375 -14.33750 -14.12574 -14.00873 -13.66565 -13.17656 -12.99717 -12.84967 -12.75737 -12.52405 -11.84318 -11.81093 -11.38924 -11.25387 -11.06651 -10.98444 -10.96721 -10.70587 -10.60273 -10.52612 -9.97909 -9.73658 -9.61836 -9.30511 -9.23107 -8.76377 -8.52996 -7.68530 -6.86399 -5.73440 -3.05710 0.32140 0.81643 1.69758 2.15583 2.93572 2.98229 3.41387 3.46537 3.46690 3.64113 3.78674 4.06480 4.17167 4.29087 4.46938 4.52179 4.67879 4.74198 4.83410 5.00675 5.05631 5.15152 5.23315 5.39247 5.44845 5.63399 5.67173 5.72107 5.80214 5.90670 5.96228 6.14977 6.24174 6.38035 6.44069 6.45343 6.65734 6.76854 6.77038 6.97576 7.28084 7.29888 7.44559 7.62441 8.01146 8.02012 8.68235 9.07647 9.74458 10.62631 11.43313 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015844 B = 0.002914 C = 0.002640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.787271 B = 9605.856500 C =10602.628490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.308 6.308 3 C 0.088 3.912 4 C -0.150 4.150 5 C -0.058 4.058 6 C 0.135 3.865 7 C -0.292 4.292 8 C 0.595 3.405 9 O -0.563 6.563 10 N -0.710 5.710 11 C 0.127 3.873 12 C 0.126 3.874 13 H 0.050 0.950 14 C -0.156 4.156 15 C 0.158 3.842 16 N -0.602 5.602 17 C -0.218 4.218 18 H 0.079 0.921 19 C -0.007 4.007 20 N -0.921 5.921 21 Si 0.906 3.094 22 H -0.285 1.285 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.115 3.885 26 N -0.309 5.309 27 N -0.243 5.243 28 C 0.058 3.942 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.151 0.849 33 H 0.168 0.832 34 H 0.400 0.600 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.076 0.924 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.026 0.974 41 H 0.253 0.747 42 H 0.202 0.798 43 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.289 -16.214 10.571 23.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.221 6.221 3 C 0.040 3.960 4 C -0.174 4.174 5 C -0.078 4.078 6 C 0.013 3.987 7 C -0.307 4.307 8 C 0.383 3.617 9 O -0.444 6.444 10 N -0.359 5.359 11 C 0.002 3.998 12 C 0.018 3.982 13 H 0.067 0.933 14 C -0.195 4.195 15 C 0.033 3.967 16 N -0.329 5.329 17 C -0.346 4.346 18 H 0.097 0.903 19 C -0.203 4.203 20 N -0.568 5.568 21 Si 0.736 3.264 22 H -0.212 1.212 23 H -0.216 1.216 24 H -0.212 1.212 25 C -0.064 4.064 26 N -0.132 5.132 27 N -0.008 5.008 28 C -0.069 4.069 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.123 0.877 32 H 0.168 0.832 33 H 0.185 0.815 34 H 0.234 0.766 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.095 0.905 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.044 0.956 41 H 0.063 0.937 42 H 0.219 0.781 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -13.118 -17.301 10.231 24.002 hybrid contribution 0.244 -0.017 -0.892 0.925 sum -12.874 -17.318 9.339 23.513 Atomic orbital electron populations 1.23155 0.77318 1.04497 1.01766 1.86056 1.21965 1.24652 1.89422 1.17838 0.90684 0.85585 1.01884 1.21549 1.01407 0.91347 1.03056 1.20789 0.90769 0.99629 0.96580 1.19286 0.92527 0.86436 1.00489 1.19824 0.91449 0.93537 1.25879 1.16804 0.85174 0.83730 0.75998 1.90720 1.19625 1.81460 1.52621 1.45682 1.09101 1.06764 1.74320 1.21734 0.98224 0.78428 1.01402 1.22510 0.91789 0.93759 0.90130 0.93296 1.23772 1.01275 0.94910 0.99524 1.22194 0.92360 0.86900 0.95215 1.46068 1.65960 1.09034 1.11815 1.18906 1.30915 0.92067 0.92679 0.90349 1.24741 1.00841 0.96568 0.98175 1.69804 1.43428 1.15215 1.28339 0.86300 0.77888 0.80064 0.82142 1.21180 1.21610 1.21183 1.24179 0.98586 0.90707 0.92941 1.77670 0.88595 1.15604 1.31337 1.45627 1.06486 1.04328 1.44309 1.19947 0.90995 0.87970 1.07975 0.92259 0.92212 0.87680 0.83178 0.81473 0.76558 0.90956 0.92173 0.90515 0.92837 0.90865 0.95601 0.93680 0.78109 0.80580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.11 9.82 101.05 0.99 1.11 16 2 O -0.31 -2.44 10.48 -19.76 -0.21 -2.65 16 3 C 0.09 0.83 6.63 -39.66 -0.26 0.57 16 4 C -0.15 -1.34 9.04 -39.39 -0.36 -1.70 16 5 C -0.06 -0.69 9.72 -39.55 -0.38 -1.08 16 6 C 0.13 1.96 6.76 -84.06 -0.57 1.39 16 7 C -0.29 -4.62 6.17 -104.66 -0.65 -5.27 16 8 C 0.60 10.57 7.78 -12.92 -0.10 10.47 16 9 O -0.56 -11.22 15.70 5.16 0.08 -11.14 16 10 N -0.71 -12.21 5.52 -61.66 -0.34 -12.55 16 11 C 0.13 2.29 5.54 -4.04 -0.02 2.27 16 12 C 0.13 2.40 4.33 -66.87 -0.29 2.11 16 13 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 14 C -0.16 -2.83 7.86 -25.80 -0.20 -3.04 16 15 C 0.16 3.63 7.51 -2.98 -0.02 3.61 16 16 N -0.60 -14.63 3.57 -170.74 -0.61 -15.24 16 17 C -0.22 -5.86 10.51 -15.06 -0.16 -6.01 16 18 H 0.08 2.02 7.80 -52.49 -0.41 1.61 16 19 C -0.01 -0.19 5.50 -17.43 -0.10 -0.29 16 20 N -0.92 -27.10 11.38 55.49 0.63 -26.47 16 21 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 C 0.11 1.64 11.44 -17.14 -0.20 1.45 16 26 N -0.31 -4.60 12.58 30.75 0.39 -4.21 16 27 N -0.24 -3.36 3.86 -10.40 -0.04 -3.40 16 28 C 0.06 0.63 11.10 -16.47 -0.18 0.45 16 29 H 0.06 0.18 7.67 -51.92 -0.40 -0.21 16 30 H 0.06 0.20 7.67 -51.93 -0.40 -0.20 16 31 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.15 0.83 6.36 -52.49 -0.33 0.50 16 33 H 0.17 2.02 7.10 -52.49 -0.37 1.65 16 34 H 0.40 6.40 7.39 -40.82 -0.30 6.10 16 35 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 38 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 1.87 7.15 -51.93 -0.37 1.50 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.20 2.32 7.46 -52.49 -0.39 1.93 16 43 H 0.18 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 365.60 15.07 5.51 5.51 Total: -1.00 -34.73 365.60 -7.60 -42.33 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -5.49 Total: 4.51 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -2.50 Total: 6.04 kcal Atomic # 7 Polarization: -61.89 SS G_CDS: 0.03 Total: -61.87 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.13 Total: -13.79 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.73 -7.60 -42.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038830000.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.514 kcal (2) G-P(sol) polarization free energy of solvation -34.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds