Wall clock time and date at job start Tue Mar 31 2020 06:00:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36435 * 126.32052 * 2 1 4 4 O 1.35270 * 125.01975 * 359.97438 * 3 2 1 5 5 N 1.30725 * 109.96543 * 179.97438 * 3 2 1 6 6 C 1.35987 * 109.53358 * 0.02562 * 5 3 2 7 7 C 1.39341 * 133.39449 * 180.02562 * 6 5 3 8 8 C 1.39216 * 119.51613 * 179.97438 * 7 6 5 9 9 C 1.47666 * 119.91757 * 179.97438 * 8 7 6 10 10 O 1.21570 * 119.99840 * 0.02562 * 9 8 7 11 11 N 1.34771 * 119.99552 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99622 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 11 9 14 14 H 1.09004 * 112.73833 * 56.23561 * 13 12 11 15 15 C 1.53495 * 113.46977 * 187.05871 * 13 12 11 16 16 C 1.53498 * 83.34335 * 140.84879 * 15 13 12 17 17 N 1.47067 * 87.98706 * 333.92976 * 16 15 13 18 18 C 1.36935 * 136.05764 * 207.15118 * 17 16 15 19 19 H 1.07997 * 119.99349 * 179.97438 * 18 17 16 20 20 C 1.38802 * 120.00145 * 359.95659 * 18 17 16 21 21 N 1.31623 * 120.00096 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00169 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46665 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47041 * 119.99900 * 22 20 18 25 25 H 1.48494 * 109.47129 * 239.99977 * 22 20 18 26 26 C 1.40074 * 120.16187 * 0.26364 * 8 7 6 27 27 C 1.36513 * 120.44151 * 359.50127 * 26 8 7 28 28 C 1.38129 * 126.31943 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47583 * 270.02623 * 1 2 3 30 30 H 1.09001 * 109.46645 * 30.03169 * 1 2 3 31 31 H 1.09000 * 109.46855 * 150.02226 * 1 2 3 32 32 H 0.96705 * 113.99606 * 90.00299 * 4 3 2 33 33 H 1.08001 * 120.24887 * 359.93397 * 7 6 5 34 34 H 0.96996 * 120.00772 * 359.97438 * 11 9 8 35 35 H 1.09002 * 109.47068 * 299.99729 * 12 11 9 36 36 H 1.09001 * 109.47372 * 59.99816 * 12 11 9 37 37 H 1.09002 * 114.20591 * 254.43458 * 15 13 12 38 38 H 1.08995 * 114.20475 * 27.25921 * 15 13 12 39 39 H 1.09008 * 113.46750 * 219.15106 * 16 15 13 40 40 H 1.09000 * 113.46776 * 88.71402 * 16 15 13 41 41 H 0.97005 * 119.99903 * 179.97438 * 21 20 18 42 42 H 1.08001 * 119.77878 * 179.74668 * 26 8 7 43 43 H 1.08006 * 119.92189 * 180.26159 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2731 1.0993 0.0000 4 8 1.8403 2.3809 -0.0005 5 7 3.5275 0.7312 0.0005 6 6 3.6029 -0.6266 0.0004 7 6 4.6669 -1.5263 0.0012 8 6 4.4084 -2.8943 0.0012 9 6 5.5293 -3.8556 0.0015 10 8 6.6761 -3.4521 0.0022 11 7 5.2809 -5.1802 0.0010 12 6 6.3930 -6.1339 0.0019 13 6 5.8410 -7.5609 0.0018 14 1 5.1685 -7.7524 -0.8344 15 6 6.9236 -8.6351 0.1756 16 6 5.8601 -9.3107 1.0525 17 7 5.2928 -7.9769 1.3015 18 6 4.5719 -7.3834 2.3031 19 1 4.2789 -6.3475 2.2166 20 6 4.2174 -8.1132 3.4293 21 7 4.5737 -9.3760 3.5343 22 14 3.2345 -7.3034 4.7960 23 1 2.9612 -5.8885 4.4375 24 1 1.9493 -8.0251 4.9759 25 1 4.0113 -7.3530 6.0606 26 6 3.0877 -3.3610 -0.0051 27 6 2.0434 -2.4817 -0.0012 28 6 2.2831 -1.1129 0.0005 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.7142 2.7537 0.8828 33 1 5.6847 -1.1652 0.0011 34 1 4.3659 -5.5021 0.0009 35 1 7.0041 -5.9803 -0.8875 36 1 7.0025 -5.9806 0.8925 37 1 7.1626 -9.1807 -0.7373 38 1 7.8045 -8.2975 0.7217 39 1 6.2697 -9.7819 1.9460 40 1 5.1931 -9.9692 0.4960 41 1 4.3262 -9.8859 4.3215 42 1 2.8943 -4.4235 -0.0092 43 1 1.0284 -2.8508 -0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039062291.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:06 Heat of formation + Delta-G solvation = 70.935491 kcal Electronic energy + Delta-G solvation = -27469.527411 eV Core-core repulsion = 23518.491289 eV Total energy + Delta-G solvation = -3951.036121 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.47331 -39.69821 -38.40253 -37.95454 -36.41627 -34.67436 -34.06228 -32.23781 -30.81450 -29.58599 -28.05139 -27.72004 -27.11809 -23.82971 -23.48567 -22.96777 -21.85877 -21.10223 -20.40355 -19.29236 -18.92566 -18.06067 -17.41430 -16.92450 -16.58188 -15.85871 -15.69127 -15.29635 -14.98088 -14.54339 -14.41927 -14.20860 -14.10403 -13.78141 -13.53782 -13.28613 -13.21829 -12.98277 -12.93083 -12.51656 -11.95755 -11.59840 -11.57785 -11.44970 -11.12530 -10.99038 -10.79758 -10.70988 -10.57020 -10.25950 -10.01913 -9.83624 -9.70005 -9.22757 -8.83898 -8.68355 -8.44827 -8.33558 -6.91937 -5.79260 -3.11822 0.65540 0.89612 1.88080 2.30187 3.04096 3.23584 3.35301 3.41008 3.43608 3.57260 3.91011 4.11085 4.26680 4.40896 4.66976 4.68072 4.87364 4.95732 5.00148 5.12159 5.19214 5.21106 5.37315 5.43387 5.56297 5.73947 5.83551 5.91409 6.01325 6.11095 6.19104 6.21322 6.28210 6.33164 6.40767 6.51400 6.59429 6.71913 6.89595 7.12410 7.21421 7.38427 7.45760 7.56490 7.90352 7.95386 8.55632 9.00597 9.68027 10.60838 11.37996 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014055 B = 0.003097 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.687703 B = 9039.794081 C =10349.854315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.495 5.495 3 C 0.444 3.556 4 O -0.442 6.442 5 N -0.477 5.477 6 C 0.045 3.955 7 C 0.004 3.996 8 C -0.134 4.134 9 C 0.558 3.442 10 O -0.547 6.547 11 N -0.707 5.707 12 C 0.121 3.879 13 C 0.127 3.873 14 H 0.049 0.951 15 C -0.161 4.161 16 C 0.151 3.849 17 N -0.602 5.602 18 C -0.213 4.213 19 H 0.081 0.919 20 C -0.007 4.007 21 N -0.918 5.918 22 Si 0.906 3.094 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.290 1.290 26 C -0.063 4.063 27 C -0.114 4.114 28 C 0.074 3.926 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.409 0.591 33 H 0.147 0.853 34 H 0.402 0.598 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.025 0.975 41 H 0.252 0.748 42 H 0.140 0.860 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.107 15.883 -8.713 20.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.198 5.198 3 C 0.141 3.859 4 O -0.243 6.243 5 N -0.207 5.207 6 C -0.072 4.072 7 C -0.016 4.016 8 C -0.140 4.140 9 C 0.345 3.655 10 O -0.426 6.426 11 N -0.357 5.357 12 C -0.003 4.003 13 C 0.019 3.981 14 H 0.066 0.934 15 C -0.200 4.200 16 C 0.025 3.975 17 N -0.328 5.328 18 C -0.340 4.340 19 H 0.099 0.901 20 C -0.204 4.204 21 N -0.565 5.565 22 Si 0.737 3.263 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.217 1.217 26 C -0.083 4.083 27 C -0.135 4.135 28 C -0.035 4.035 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.107 0.893 32 H 0.267 0.733 33 H 0.164 0.836 34 H 0.238 0.762 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.043 0.957 41 H 0.063 0.937 42 H 0.157 0.843 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.922 16.780 -8.976 20.613 hybrid contribution -2.171 -0.073 1.344 2.554 sum -10.093 16.707 -7.632 20.958 Atomic orbital electron populations 1.22020 0.75852 1.05084 1.03700 1.45551 1.07546 1.05209 1.61474 1.20343 0.84025 0.81211 1.00366 1.84800 1.86411 1.18543 1.34562 1.70708 1.15425 1.11470 1.23054 1.18596 0.92108 0.89176 1.07365 1.20364 0.98351 0.89794 0.93131 1.19730 0.93582 0.93317 1.07361 1.18004 0.88200 0.82490 0.76842 1.90751 1.22062 1.78956 1.50819 1.45866 1.11140 1.05177 1.73554 1.21844 0.88737 0.88188 1.01538 1.22429 0.93743 0.91220 0.90709 0.93397 1.23661 0.97854 0.98539 0.99947 1.22032 0.90205 0.88938 0.96276 1.45685 1.64051 1.08535 1.14518 1.18898 1.26391 0.94395 0.94363 0.90079 1.24765 1.01310 0.95957 0.98328 1.69839 1.50214 1.07410 1.29001 0.86129 0.79484 0.78308 0.82383 1.20433 1.21819 1.21695 1.20858 0.90914 0.99993 0.96539 1.19555 1.00128 0.88147 1.05643 1.18802 0.90729 0.88928 1.05060 0.90494 0.89117 0.89309 0.73324 0.83552 0.76223 0.92049 0.90900 0.92318 0.90150 0.90990 0.95730 0.93740 0.84269 0.85204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.39 11.10 59.85 0.66 1.06 16 2 N -0.50 -4.88 3.22 -123.31 -0.40 -5.28 16 3 C 0.44 4.93 8.98 -88.90 -0.80 4.13 16 4 O -0.44 -3.38 13.51 -17.50 -0.24 -3.61 16 5 N -0.48 -6.84 11.32 -12.26 -0.14 -6.98 16 6 C 0.05 0.65 7.21 -84.70 -0.61 0.04 16 7 C 0.00 0.06 9.64 -38.81 -0.37 -0.31 16 8 C -0.13 -2.01 5.87 -105.00 -0.62 -2.63 16 9 C 0.56 9.78 7.76 -12.41 -0.10 9.68 16 10 O -0.55 -11.21 16.32 5.30 0.09 -11.12 16 11 N -0.71 -11.96 5.28 -61.31 -0.32 -12.28 16 12 C 0.12 2.17 5.52 -4.04 -0.02 2.15 16 13 C 0.13 2.37 4.10 -72.40 -0.30 2.08 16 14 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 15 C -0.16 -2.87 8.03 -26.22 -0.21 -3.08 16 16 C 0.15 3.39 7.39 -8.51 -0.06 3.33 16 17 N -0.60 -14.30 3.65 -177.00 -0.65 -14.95 16 18 C -0.21 -5.58 10.55 -15.06 -0.16 -5.73 16 19 H 0.08 2.03 7.50 -52.49 -0.39 1.63 16 20 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 21 N -0.92 -26.55 11.51 55.49 0.64 -25.92 16 22 Si 0.91 21.61 29.55 -169.99 -5.02 16.59 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 C -0.06 -0.79 9.47 -39.52 -0.37 -1.16 16 27 C -0.11 -1.26 9.96 -39.94 -0.40 -1.66 16 28 C 0.07 0.91 6.87 -83.85 -0.58 0.33 16 29 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.09 0.34 8.12 -51.93 -0.42 -0.08 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.41 0.93 9.06 45.56 0.41 1.34 16 33 H 0.15 2.25 7.63 -52.49 -0.40 1.85 16 34 H 0.40 6.30 6.37 -40.82 -0.26 6.04 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.08 1.44 8.12 -51.93 -0.42 1.01 16 39 H 0.07 1.82 7.13 -51.92 -0.37 1.45 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.14 1.56 6.36 -52.49 -0.33 1.22 16 43 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 367.32 15.07 5.54 5.54 Total: -1.00 -35.72 367.32 -9.24 -44.96 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -4.71 Total: 5.14 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: -4.03 Total: 7.92 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -0.87 Total: -65.41 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -0.15 Total: -14.74 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.72 -9.24 -44.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039062291.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.894 kcal (2) G-P(sol) polarization free energy of solvation -35.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds