Wall clock time and date at job start Tue Mar 31 2020 06:00:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36435 * 126.32052 * 2 1 4 4 O 1.35270 * 125.01975 * 359.97438 * 3 2 1 5 5 N 1.30725 * 109.96543 * 179.97438 * 3 2 1 6 6 C 1.35987 * 109.53358 * 0.02562 * 5 3 2 7 7 C 1.39341 * 133.39449 * 180.02562 * 6 5 3 8 8 C 1.39216 * 119.51613 * 179.97438 * 7 6 5 9 9 C 1.47666 * 119.91757 * 179.97438 * 8 7 6 10 10 O 1.21570 * 119.99840 * 0.02562 * 9 8 7 11 11 N 1.34771 * 119.99552 * 180.02562 * 9 8 7 12 12 C 1.46505 * 119.99622 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47212 * 179.97438 * 12 11 9 14 14 H 1.09004 * 112.73833 * 56.23561 * 13 12 11 15 15 C 1.53495 * 113.46977 * 187.05871 * 13 12 11 16 16 C 1.53498 * 83.34335 * 140.84879 * 15 13 12 17 17 N 1.47067 * 87.98706 * 333.92976 * 16 15 13 18 18 C 1.36935 * 136.05764 * 207.15118 * 17 16 15 19 19 H 1.07997 * 119.99349 * 179.97438 * 18 17 16 20 20 C 1.38802 * 120.00145 * 359.95659 * 18 17 16 21 21 N 1.31623 * 120.00096 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 120.00169 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46665 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.47041 * 119.99900 * 22 20 18 25 25 H 1.48494 * 109.47129 * 239.99977 * 22 20 18 26 26 C 1.40074 * 120.16187 * 0.26364 * 8 7 6 27 27 C 1.36513 * 120.44151 * 359.50127 * 26 8 7 28 28 C 1.38129 * 126.31943 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47583 * 270.02623 * 1 2 3 30 30 H 1.09001 * 109.46645 * 30.03169 * 1 2 3 31 31 H 1.09000 * 109.46855 * 150.02226 * 1 2 3 32 32 H 0.96705 * 113.99606 * 90.00299 * 4 3 2 33 33 H 1.08001 * 120.24887 * 359.93397 * 7 6 5 34 34 H 0.96996 * 120.00772 * 359.97438 * 11 9 8 35 35 H 1.09002 * 109.47068 * 299.99729 * 12 11 9 36 36 H 1.09001 * 109.47372 * 59.99816 * 12 11 9 37 37 H 1.09002 * 114.20591 * 254.43458 * 15 13 12 38 38 H 1.08995 * 114.20475 * 27.25921 * 15 13 12 39 39 H 1.09008 * 113.46750 * 219.15106 * 16 15 13 40 40 H 1.09000 * 113.46776 * 88.71402 * 16 15 13 41 41 H 0.97005 * 119.99903 * 179.97438 * 21 20 18 42 42 H 1.08001 * 119.77878 * 179.74668 * 26 8 7 43 43 H 1.08006 * 119.92189 * 180.26159 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2731 1.0993 0.0000 4 8 1.8403 2.3809 -0.0005 5 7 3.5275 0.7312 0.0005 6 6 3.6029 -0.6266 0.0004 7 6 4.6669 -1.5263 0.0012 8 6 4.4084 -2.8943 0.0012 9 6 5.5293 -3.8556 0.0015 10 8 6.6761 -3.4521 0.0022 11 7 5.2809 -5.1802 0.0010 12 6 6.3930 -6.1339 0.0019 13 6 5.8410 -7.5609 0.0018 14 1 5.1685 -7.7524 -0.8344 15 6 6.9236 -8.6351 0.1756 16 6 5.8601 -9.3107 1.0525 17 7 5.2928 -7.9769 1.3015 18 6 4.5719 -7.3834 2.3031 19 1 4.2789 -6.3475 2.2166 20 6 4.2174 -8.1132 3.4293 21 7 4.5737 -9.3760 3.5343 22 14 3.2345 -7.3034 4.7960 23 1 2.9612 -5.8885 4.4375 24 1 1.9493 -8.0251 4.9759 25 1 4.0113 -7.3530 6.0606 26 6 3.0877 -3.3610 -0.0051 27 6 2.0434 -2.4817 -0.0012 28 6 2.2831 -1.1129 0.0005 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 1.7142 2.7537 0.8828 33 1 5.6847 -1.1652 0.0011 34 1 4.3659 -5.5021 0.0009 35 1 7.0041 -5.9803 -0.8875 36 1 7.0025 -5.9806 0.8925 37 1 7.1626 -9.1807 -0.7373 38 1 7.8045 -8.2975 0.7217 39 1 6.2697 -9.7819 1.9460 40 1 5.1931 -9.9692 0.4960 41 1 4.3262 -9.8859 4.3215 42 1 2.8943 -4.4235 -0.0092 43 1 1.0284 -2.8508 -0.0018 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039062291.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:05 Heat of formation + Delta-G solvation = 42.645768 kcal Electronic energy + Delta-G solvation = -27470.754145 eV Core-core repulsion = 23518.491289 eV Total energy + Delta-G solvation = -3952.262856 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.34475 -41.02941 -39.81588 -38.96991 -37.34101 -35.64758 -35.34425 -34.20180 -31.79058 -30.68843 -29.88256 -28.88338 -27.96453 -25.35503 -24.95558 -23.89651 -23.31467 -21.95793 -21.68242 -20.94741 -19.63434 -19.34745 -18.38067 -18.23133 -17.72515 -17.11876 -17.03015 -16.72222 -16.20381 -15.78651 -15.67885 -15.39888 -15.29168 -15.06223 -14.81061 -14.54026 -14.16382 -14.07454 -13.58870 -13.50983 -13.37793 -13.31380 -12.96059 -12.67252 -12.57690 -12.47126 -12.42631 -12.26281 -11.81541 -11.58347 -11.53437 -11.29634 -11.14552 -10.87200 -10.78053 -10.05679 -9.46665 -9.29051 -8.84987 -7.83490 -5.14883 -0.31716 -0.09612 1.14407 1.45646 1.45764 1.48557 1.56612 1.83765 2.13078 2.50140 2.62441 2.79498 3.25734 3.39050 3.47275 3.68208 3.78459 3.86501 3.98449 4.09343 4.14684 4.17076 4.36778 4.39441 4.40048 4.55475 4.67480 4.68468 4.74491 4.90837 4.95050 5.09900 5.13748 5.15086 5.21843 5.25204 5.37595 5.44974 5.57105 5.63550 5.64092 5.78762 6.01115 6.51804 6.55230 6.58915 6.98037 7.20713 7.68641 8.68169 9.34456 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014055 B = 0.003097 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.687703 B = 9039.794081 C =10349.854315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.487 5.487 3 C 0.458 3.542 4 O -0.438 6.438 5 N -0.526 5.526 6 C 0.023 3.977 7 C -0.014 4.014 8 C -0.145 4.145 9 C 0.557 3.443 10 O -0.585 6.585 11 N -0.702 5.702 12 C 0.129 3.871 13 C 0.135 3.865 14 H 0.074 0.926 15 C -0.136 4.136 16 C 0.143 3.857 17 N -0.629 5.629 18 C -0.203 4.203 19 H 0.090 0.910 20 C -0.071 4.071 21 N -0.955 5.955 22 Si 0.964 3.036 23 H -0.263 1.263 24 H -0.292 1.292 25 H -0.303 1.303 26 C -0.069 4.069 27 C -0.096 4.096 28 C 0.073 3.927 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.104 0.896 32 H 0.433 0.567 33 H 0.127 0.873 34 H 0.409 0.591 35 H 0.081 0.919 36 H 0.043 0.957 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.034 0.966 40 H 0.025 0.975 41 H 0.244 0.756 42 H 0.154 0.846 43 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.835 17.234 -9.975 23.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.189 5.189 3 C 0.154 3.846 4 O -0.244 6.244 5 N -0.257 5.257 6 C -0.094 4.094 7 C -0.035 4.035 8 C -0.150 4.150 9 C 0.345 3.655 10 O -0.467 6.467 11 N -0.352 5.352 12 C 0.004 3.996 13 C 0.028 3.972 14 H 0.091 0.909 15 C -0.175 4.175 16 C 0.017 3.983 17 N -0.355 5.355 18 C -0.331 4.331 19 H 0.108 0.892 20 C -0.264 4.264 21 N -0.605 5.605 22 Si 0.794 3.206 23 H -0.187 1.187 24 H -0.219 1.219 25 H -0.231 1.231 26 C -0.089 4.089 27 C -0.117 4.117 28 C -0.038 4.038 29 H 0.114 0.886 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.296 0.704 33 H 0.145 0.855 34 H 0.247 0.753 35 H 0.099 0.901 36 H 0.061 0.939 37 H 0.118 0.882 38 H 0.096 0.904 39 H 0.053 0.947 40 H 0.042 0.958 41 H 0.053 0.947 42 H 0.172 0.828 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -10.702 18.172 -10.258 23.451 hybrid contribution -1.378 -0.329 1.666 2.186 sum -12.079 17.842 -8.593 23.197 Atomic orbital electron populations 1.22435 0.72723 1.06751 1.05481 1.45788 1.09154 1.03899 1.60009 1.20426 0.83640 0.82472 0.98083 1.84773 1.85950 1.16862 1.36769 1.70636 1.17747 1.11688 1.25632 1.18682 0.93087 0.89540 1.08078 1.20246 0.98009 0.90387 0.94835 1.19541 0.93893 0.92502 1.09110 1.18403 0.88399 0.82846 0.75811 1.90722 1.23808 1.79542 1.52661 1.45800 1.11265 1.04932 1.73246 1.21668 0.88885 0.87994 1.01055 1.22573 0.93852 0.91733 0.88999 0.90866 1.23493 0.96356 0.97242 1.00388 1.22045 0.91756 0.88737 0.95767 1.46003 1.63825 1.09541 1.16167 1.19270 1.24472 0.94708 0.94666 0.89222 1.25506 1.03440 0.96631 1.00807 1.70020 1.52364 1.08777 1.29312 0.85195 0.77826 0.78262 0.79295 1.18677 1.21919 1.23063 1.20988 0.89994 1.01029 0.96894 1.19890 1.01428 0.87240 1.03098 1.18970 0.90256 0.89998 1.04577 0.88596 0.87453 0.87783 0.70374 0.85513 0.75346 0.90072 0.93895 0.88178 0.90412 0.94735 0.95753 0.94700 0.82810 0.81374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.39 11.10 127.77 1.42 1.81 16 2 N -0.49 -8.12 3.22 -654.91 -2.11 -10.22 16 3 C 0.46 9.26 8.98 179.75 1.61 10.87 16 4 O -0.44 -5.53 13.51 -85.54 -1.16 -6.68 16 5 N -0.53 -14.97 11.32 -306.55 -3.47 -18.44 16 6 C 0.02 0.68 7.21 39.35 0.28 0.96 16 7 C -0.01 -0.44 9.64 22.77 0.22 -0.22 16 8 C -0.14 -4.35 5.87 -20.11 -0.12 -4.47 16 9 C 0.56 19.67 7.76 86.73 0.67 20.34 16 10 O -0.59 -24.79 16.32 -3.94 -0.06 -24.85 16 11 N -0.70 -23.09 5.28 -466.15 -2.46 -25.55 16 12 C 0.13 4.46 5.52 86.38 0.48 4.94 16 13 C 0.13 4.77 4.10 41.79 0.17 4.94 16 14 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 15 C -0.14 -4.58 8.03 30.93 0.25 -4.33 16 16 C 0.14 6.38 7.39 83.18 0.61 7.00 16 17 N -0.63 -29.57 3.65 -713.89 -2.61 -32.18 16 18 C -0.20 -10.54 10.55 84.03 0.89 -9.66 16 19 H 0.09 4.39 7.50 -2.91 -0.02 4.37 16 20 C -0.07 -3.94 5.50 84.86 0.47 -3.47 16 21 N -0.95 -56.70 11.51 21.65 0.25 -56.45 16 22 Si 0.96 44.73 29.55 68.60 2.03 46.76 16 23 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 24 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 25 H -0.30 -14.53 7.11 99.48 0.71 -13.82 16 26 C -0.07 -1.58 9.47 22.31 0.21 -1.37 16 27 C -0.10 -1.82 9.96 22.04 0.22 -1.60 16 28 C 0.07 1.62 6.87 38.91 0.27 1.89 16 29 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.11 0.33 8.12 -2.39 -0.02 0.31 16 31 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 32 H 0.43 0.65 9.06 -74.05 -0.67 -0.02 16 33 H 0.13 4.30 7.63 -2.91 -0.02 4.27 16 34 H 0.41 12.12 6.37 -92.71 -0.59 11.53 16 35 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 38 H 0.08 2.68 8.12 -2.39 -0.02 2.66 16 39 H 0.03 1.79 7.13 -2.38 -0.02 1.77 16 40 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.24 14.23 8.31 -92.70 -0.77 13.46 16 42 H 0.15 3.02 6.36 -2.91 -0.02 3.00 16 43 H 0.17 1.87 8.06 -2.91 -0.02 1.85 16 Total: -1.00 -80.97 367.32 -2.12 -83.09 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -0.19 Total: 16.88 kcal Atomic # 6 Polarization: 19.98 SS G_CDS: 7.65 Total: 27.63 kcal Atomic # 7 Polarization: -132.44 SS G_CDS: -10.40 Total: -142.83 kcal Atomic # 8 Polarization: -30.31 SS G_CDS: -1.22 Total: -31.53 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -80.97 -2.12 -83.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039062291.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.738 kcal (2) G-P(sol) polarization free energy of solvation -80.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.092 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds