Wall clock time and date at job start Tue Mar 31 2020 06:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36255 * 126.39901 * 2 1 4 4 O 1.35202 * 125.01053 * 0.02562 * 3 2 1 5 5 N 1.30917 * 109.97435 * 180.02562 * 3 2 1 6 6 C 1.35565 * 109.71109 * 359.97438 * 5 3 2 7 7 C 1.40020 * 133.26235 * 180.02562 * 6 5 3 8 8 C 1.36206 * 120.08281 * 179.97438 * 7 6 5 9 9 C 1.40155 * 120.49623 * 0.02829 * 8 7 6 10 10 C 1.47509 * 119.95389 * 179.97438 * 9 8 7 11 11 O 1.21596 * 120.00402 * 179.97438 * 10 9 8 12 12 N 1.34777 * 119.99248 * 359.97438 * 10 9 8 13 13 C 1.46500 * 119.99487 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47301 * 180.02562 * 13 12 10 15 15 H 1.09004 * 112.73491 * 56.23756 * 14 13 12 16 16 C 1.53495 * 113.47102 * 187.06186 * 14 13 12 17 17 C 1.53496 * 83.34261 * 140.84984 * 16 14 13 18 18 N 1.47066 * 87.98895 * 333.93197 * 17 16 14 19 19 C 1.36931 * 136.06027 * 207.15671 * 18 17 16 20 20 H 1.08009 * 119.99944 * 179.97438 * 19 18 17 21 21 C 1.38813 * 120.00104 * 359.95109 * 19 18 17 22 22 N 1.31617 * 119.99653 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00089 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46846 * 90.00060 * 23 21 19 25 25 H 1.48498 * 109.46912 * 209.99826 * 23 21 19 26 26 H 1.48496 * 109.47116 * 329.99889 * 23 21 19 27 27 C 1.39541 * 120.10074 * 359.97438 * 9 8 7 28 28 C 1.38215 * 119.59307 * 359.97438 * 27 9 8 29 29 H 1.08998 * 109.47231 * 270.00133 * 1 2 3 30 30 H 1.09001 * 109.47429 * 30.00445 * 1 2 3 31 31 H 1.08999 * 109.47235 * 150.00055 * 1 2 3 32 32 H 0.96697 * 114.00056 * 269.99933 * 4 3 2 33 33 H 1.07998 * 119.96124 * 359.96083 * 7 6 5 34 34 H 1.07996 * 119.75366 * 179.97438 * 8 7 6 35 35 H 0.96989 * 120.00713 * 0.02562 * 12 10 9 36 36 H 1.09001 * 109.47701 * 300.00516 * 13 12 10 37 37 H 1.09003 * 109.46951 * 60.00931 * 13 12 10 38 38 H 1.08997 * 114.20484 * 254.43627 * 16 14 13 39 39 H 1.08997 * 114.20240 * 27.26267 * 16 14 13 40 40 H 1.09006 * 113.46473 * 219.15696 * 17 16 14 41 41 H 1.08995 * 113.47120 * 88.71715 * 17 16 14 42 42 H 0.97006 * 119.99597 * 180.02562 * 22 21 19 43 43 H 1.08000 * 120.19948 * 179.97438 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2735 1.0967 0.0000 4 8 1.8425 2.3782 0.0005 5 7 3.5292 0.7265 -0.0006 6 6 3.6070 -0.6269 -0.0004 7 6 4.6800 -1.5264 -0.0003 8 6 4.4459 -2.8683 0.0004 9 6 3.1340 -3.3614 0.0005 10 6 2.8944 -4.8169 0.0007 11 8 1.7565 -5.2458 0.0013 12 7 3.9367 -5.6714 0.0003 13 6 3.6987 -7.1169 0.0000 14 6 5.0392 -7.8545 0.0002 15 1 5.6774 -7.5683 0.8362 16 6 4.9013 -9.3734 -0.1732 17 6 6.1500 -9.2068 -1.0501 18 7 5.7266 -7.8207 -1.2996 19 6 5.8966 -6.9029 -2.3014 20 1 5.4546 -5.9211 -2.2151 21 6 6.6375 -7.2340 -3.4276 22 7 7.1768 -8.4300 -3.5323 23 14 6.8689 -5.9821 -4.7947 24 1 8.0915 -5.1814 -4.5309 25 1 7.0101 -6.6880 -6.0935 26 1 5.6891 -5.0818 -4.8463 27 6 2.0541 -2.4777 0.0004 28 6 2.2871 -1.1153 0.0007 29 1 -0.3633 0.0000 1.0276 30 1 -0.3634 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 1.7168 2.7512 -0.8827 33 1 5.6944 -1.1560 -0.0010 34 1 5.2775 -3.5573 0.0001 35 1 4.8443 -5.3293 0.0003 36 1 3.1327 -7.3923 0.8899 37 1 3.1327 -7.3917 -0.8901 38 1 5.0693 -9.9445 0.7398 39 1 4.0097 -9.6817 -0.7192 40 1 6.1395 -9.8313 -1.9436 41 1 7.0843 -9.2819 -0.4938 42 1 7.6949 -8.6612 -4.3192 43 1 1.0426 -2.8560 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039104737.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:12 Heat of formation + Delta-G solvation = 70.994351 kcal Electronic energy + Delta-G solvation = -27503.729227 eV Core-core repulsion = 23552.695658 eV Total energy + Delta-G solvation = -3951.033569 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.46283 -39.73584 -38.41649 -37.97388 -36.44976 -34.57846 -34.14364 -32.23108 -30.74545 -29.80302 -28.02668 -27.45782 -27.26792 -23.84928 -23.47997 -22.94594 -21.86757 -21.10784 -20.46029 -19.32874 -18.87600 -18.02788 -17.46701 -16.88724 -16.59477 -15.91324 -15.65744 -15.31059 -14.94646 -14.54760 -14.38005 -14.23646 -14.16095 -13.77958 -13.52879 -13.34150 -13.22740 -13.10431 -12.92903 -12.28481 -11.97099 -11.66554 -11.57291 -11.42559 -11.11892 -10.98679 -10.76566 -10.70693 -10.58911 -10.24442 -10.03429 -9.84134 -9.73636 -9.24302 -8.82208 -8.68889 -8.55601 -8.24966 -6.91524 -5.78213 -3.10955 0.40919 1.23398 1.84912 2.15701 3.08448 3.29710 3.37794 3.43655 3.45052 3.48214 3.87562 4.13605 4.28213 4.42440 4.67284 4.74783 4.86751 4.98430 5.07520 5.08520 5.17865 5.23977 5.36835 5.43125 5.55277 5.71999 5.86669 5.90545 6.01885 6.08639 6.19221 6.23143 6.25693 6.32160 6.39703 6.54164 6.58692 6.70236 6.86123 7.11617 7.21477 7.38080 7.46029 7.56652 7.85987 7.96165 8.49590 9.01427 9.69046 10.61387 11.38932 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.014642 B = 0.003068 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1911.894900 B = 9123.203857 C =10348.284026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.492 5.492 3 C 0.452 3.548 4 O -0.442 6.442 5 N -0.488 5.488 6 C 0.080 3.920 7 C -0.070 4.070 8 C -0.089 4.089 9 C -0.110 4.110 10 C 0.557 3.443 11 O -0.550 6.550 12 N -0.705 5.705 13 C 0.121 3.879 14 C 0.126 3.874 15 H 0.049 0.951 16 C -0.161 4.161 17 C 0.151 3.849 18 N -0.602 5.602 19 C -0.215 4.215 20 H 0.081 0.919 21 C -0.006 4.006 22 N -0.918 5.918 23 Si 0.906 3.094 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.280 1.280 27 C -0.042 4.042 28 C 0.041 3.959 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.409 0.591 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.404 0.596 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.058 0.942 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.025 0.975 42 H 0.253 0.747 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.412 15.044 8.528 20.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.195 5.195 3 C 0.149 3.851 4 O -0.243 6.243 5 N -0.219 5.219 6 C -0.040 4.040 7 C -0.089 4.089 8 C -0.110 4.110 9 C -0.115 4.115 10 C 0.344 3.656 11 O -0.430 6.430 12 N -0.355 5.355 13 C -0.003 4.003 14 C 0.019 3.981 15 H 0.066 0.934 16 C -0.200 4.200 17 C 0.026 3.974 18 N -0.327 5.327 19 C -0.342 4.342 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.565 5.565 23 Si 0.737 3.263 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.206 1.206 27 C -0.064 4.064 28 C -0.067 4.067 29 H 0.096 0.904 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.267 0.733 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.240 0.760 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.043 0.957 42 H 0.063 0.937 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.559 15.446 8.778 21.195 hybrid contribution -0.137 0.689 -1.308 1.484 sum -11.696 16.135 7.470 21.282 Atomic orbital electron populations 1.22010 0.75738 1.04776 1.03965 1.45562 1.07538 1.05126 1.61228 1.20377 0.84114 0.81190 0.99384 1.84791 1.86480 1.18509 1.34538 1.70631 1.15350 1.11743 1.24164 1.18935 0.92321 0.89124 1.03632 1.19927 0.97696 0.90975 1.00313 1.20878 0.96049 0.95253 0.98779 1.19712 0.93245 0.93235 1.05310 1.17982 0.85123 0.85606 0.76892 1.90741 1.22096 1.79056 1.51139 1.45881 1.09138 1.07313 1.73127 1.21856 0.98836 0.78132 1.01482 1.22432 0.91268 0.93648 0.90788 0.93356 1.23660 1.01385 0.95000 0.99949 1.22030 0.91926 0.87221 0.96265 1.45681 1.59814 1.12776 1.14475 1.18853 1.27565 0.93456 0.94350 0.90129 1.24765 1.00149 0.97018 0.98343 1.69828 1.38407 1.19078 1.29159 0.86203 0.77996 0.80345 0.81788 1.21522 1.21651 1.20581 1.19919 1.00002 0.87767 0.98678 1.18459 0.90798 0.88647 1.08751 0.90354 0.89420 0.89169 0.73254 0.84306 0.84284 0.76030 0.92071 0.90898 0.92317 0.90186 0.90990 0.95706 0.93678 0.84459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 11.12 59.84 0.67 1.13 16 2 N -0.49 -5.09 3.23 -123.41 -0.40 -5.49 16 3 C 0.45 5.00 8.98 -88.91 -0.80 4.20 16 4 O -0.44 -3.34 13.51 -17.30 -0.23 -3.58 16 5 N -0.49 -6.76 11.29 -12.18 -0.14 -6.90 16 6 C 0.08 1.11 7.22 -84.61 -0.61 0.50 16 7 C -0.07 -0.89 10.03 -39.64 -0.40 -1.29 16 8 C -0.09 -1.16 9.46 -39.59 -0.37 -1.53 16 9 C -0.11 -1.61 5.88 -104.91 -0.62 -2.22 16 10 C 0.56 9.48 7.76 -12.48 -0.10 9.38 16 11 O -0.55 -10.80 16.33 5.28 0.09 -10.72 16 12 N -0.70 -11.79 5.28 -61.35 -0.32 -12.12 16 13 C 0.12 2.14 5.52 -4.04 -0.02 2.12 16 14 C 0.13 2.36 4.10 -72.40 -0.30 2.06 16 15 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 16 C -0.16 -2.86 8.03 -26.22 -0.21 -3.07 16 17 C 0.15 3.39 7.39 -8.51 -0.06 3.33 16 18 N -0.60 -14.31 3.65 -177.00 -0.65 -14.96 16 19 C -0.22 -5.65 10.55 -15.06 -0.16 -5.80 16 20 H 0.08 2.02 7.50 -52.48 -0.39 1.63 16 21 C -0.01 -0.16 5.50 -17.43 -0.10 -0.26 16 22 N -0.92 -26.65 11.51 55.49 0.64 -26.01 16 23 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 24 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 27 C -0.04 -0.56 9.58 -39.10 -0.37 -0.94 16 28 C 0.04 0.52 6.87 -83.89 -0.58 -0.05 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.31 8.12 -51.93 -0.42 -0.12 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.41 0.86 9.06 45.56 0.41 1.27 16 33 H 0.14 1.53 8.06 -52.49 -0.42 1.11 16 34 H 0.14 1.64 6.36 -52.49 -0.33 1.30 16 35 H 0.40 6.35 6.37 -40.82 -0.26 6.09 16 36 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 1.42 8.12 -51.93 -0.42 0.99 16 40 H 0.07 1.81 7.12 -51.93 -0.37 1.44 16 41 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.14 1.74 7.64 -52.49 -0.40 1.34 16 LS Contribution 367.32 15.07 5.54 5.54 Total: -1.00 -35.48 367.32 -9.24 -44.72 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -4.71 Total: 5.20 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: -4.03 Total: 7.55 kcal Atomic # 7 Polarization: -64.61 SS G_CDS: -0.87 Total: -65.48 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.15 Total: -14.30 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -35.48 -9.24 -44.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039104737.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.716 kcal (2) G-P(sol) polarization free energy of solvation -35.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds