Wall clock time and date at job start Tue Mar 31 2020 06:00:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34771 * 120.00181 * 2 1 4 4 O 1.21624 * 120.00535 * 175.69839 * 3 2 1 5 5 C 1.47225 * 119.99765 * 355.70077 * 3 2 1 6 6 C 1.37954 * 126.81359 * 35.29381 * 5 3 2 7 7 N 1.34140 * 107.93787 * 179.83565 * 6 5 3 8 8 C 1.46503 * 125.14065 * 180.15022 * 7 6 5 9 9 N 1.39768 * 109.72394 * 0.44026 * 7 6 5 10 10 C 1.31587 * 109.05077 * 359.72478 * 9 7 6 11 11 C 1.47656 * 126.54509 * 179.97438 * 10 9 7 12 12 C 1.36014 * 125.93561 * 324.72251 * 11 10 9 13 13 C 1.40903 * 106.73851 * 179.84880 * 12 11 10 14 14 C 1.34760 * 107.03941 * 0.40885 * 13 12 11 15 15 O 1.34305 * 108.67687 * 359.74570 * 14 13 12 16 16 C 1.46503 * 119.99676 * 179.97438 * 2 1 3 17 17 C 1.53497 * 114.20737 * 60.00122 * 16 2 1 18 18 N 1.47062 * 87.98556 * 220.14420 * 17 16 2 19 19 C 1.36935 * 136.05948 * 207.08424 * 18 17 16 20 20 H 1.07998 * 119.99909 * 5.06606 * 19 18 17 21 21 C 1.38806 * 120.00237 * 185.06287 * 19 18 17 22 22 N 1.31622 * 120.00057 * 5.05137 * 21 19 18 23 23 Si 1.86800 * 120.00079 * 185.05368 * 21 19 18 24 24 H 1.48504 * 109.47328 * 264.99951 * 23 21 19 25 25 H 1.48494 * 109.47110 * 25.00162 * 23 21 19 26 26 H 1.48509 * 109.47130 * 145.00278 * 23 21 19 27 27 C 1.47066 * 87.88415 * 27.34056 * 18 17 16 28 28 H 1.08998 * 109.47492 * 275.37553 * 1 2 3 29 29 H 1.08997 * 109.47359 * 35.37613 * 1 2 3 30 30 H 1.08997 * 109.47264 * 155.37720 * 1 2 3 31 31 H 1.07998 * 126.03663 * 359.97438 * 6 5 3 32 32 H 1.09005 * 109.46946 * 270.31300 * 8 7 6 33 33 H 1.08999 * 109.46738 * 30.30641 * 8 7 6 34 34 H 1.08996 * 109.47588 * 150.31795 * 8 7 6 35 35 H 1.08004 * 126.63605 * 359.96374 * 12 11 10 36 36 H 1.08001 * 126.48562 * 180.18678 * 13 12 11 37 37 H 1.07989 * 125.66175 * 179.71233 * 14 13 12 38 38 H 1.09002 * 113.27733 * 193.06388 * 16 2 1 39 39 H 1.09004 * 113.46789 * 105.36581 * 17 16 2 40 40 H 1.08997 * 113.46529 * 334.92854 * 17 16 2 41 41 H 0.97000 * 120.00272 * 179.97438 * 22 21 19 42 42 H 1.09004 * 113.46983 * 87.43771 * 27 18 17 43 43 H 1.09003 * 113.47194 * 217.87603 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3526 1.1687 0.0790 5 6 1.4059 2.4403 -0.0956 6 6 0.1733 2.7278 0.4533 7 7 -0.1345 3.9946 0.1372 8 6 -1.3626 4.6880 0.5335 9 7 0.8906 4.5509 -0.6330 10 6 1.8386 3.6535 -0.7990 11 6 3.0970 3.8326 -1.5503 12 6 3.2524 4.5684 -2.6836 13 6 4.6082 4.4638 -3.0527 14 6 5.2054 3.6705 -2.1417 15 8 4.2895 3.2910 -1.2356 16 6 2.1974 -1.2688 0.0006 17 6 1.9059 -2.1644 -1.2115 18 7 1.9168 -3.3164 -0.2974 19 6 2.1883 -4.6546 -0.4008 20 1 2.5564 -5.0605 -1.3314 21 6 1.9905 -5.4892 0.6905 22 7 1.4490 -5.0148 1.7923 23 14 2.4928 -7.2859 0.5954 24 1 1.3197 -8.1078 0.2033 25 1 3.5693 -7.4461 -0.4149 26 1 2.9886 -7.7322 1.9222 27 6 1.5015 -2.3999 0.7752 28 1 -0.3634 0.0963 1.0231 29 1 -0.3634 0.8379 -0.5949 30 1 -0.3633 -0.9342 -0.4282 31 1 -0.4355 2.0529 1.0366 32 1 -2.1302 4.5291 -0.2240 33 1 -1.7090 4.2956 1.4896 34 1 -1.1626 5.7551 0.6296 35 1 2.4853 5.1267 -3.1997 36 1 5.0790 4.9284 -3.9064 37 1 6.2473 3.3865 -2.1407 38 1 3.2575 -1.1541 0.2268 39 1 2.7144 -2.1825 -1.9423 40 1 0.9319 -1.9786 -1.6642 41 1 1.3103 -5.5981 2.5548 42 1 0.4208 -2.2762 0.8463 43 1 1.9653 -2.6187 1.7370 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042709354.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:51 Heat of formation + Delta-G solvation = 143.824338 kcal Electronic energy + Delta-G solvation = -27994.401178 eV Core-core repulsion = 24046.525755 eV Total energy + Delta-G solvation = -3947.875424 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.45811 -41.28855 -39.43602 -37.50625 -34.49074 -33.93352 -32.87201 -32.10510 -30.67442 -29.70626 -27.70832 -27.01373 -26.50803 -24.58167 -23.96201 -22.53357 -22.15935 -21.34387 -20.23113 -19.60271 -18.68972 -17.55416 -17.02856 -16.76699 -16.31234 -16.04216 -15.70009 -15.61016 -15.03327 -14.85984 -14.65647 -14.11953 -13.83488 -13.54008 -13.19955 -13.05034 -12.81573 -12.77555 -12.66060 -12.50042 -12.32719 -12.02209 -11.81162 -11.51194 -11.24793 -11.14865 -10.94169 -10.74747 -10.20324 -10.14622 -10.09769 -9.84307 -9.50571 -9.43821 -8.88687 -8.80856 -8.24692 -8.01468 -6.92111 -5.81380 -3.12672 1.11444 1.45758 1.88408 2.27302 2.72445 3.03492 3.22214 3.38797 3.44006 3.46408 3.56328 4.20312 4.27313 4.46521 4.57247 4.75911 4.93347 4.97365 5.00512 5.02231 5.16560 5.28181 5.31208 5.32898 5.42192 5.51508 5.63969 5.71548 5.82988 5.84390 5.92923 6.09404 6.12852 6.24541 6.42945 6.47463 6.52325 6.61536 6.82712 7.06606 7.14987 7.30819 7.37476 7.49074 7.82971 7.93151 8.59521 9.00468 9.66629 10.59326 11.37343 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015672 B = 0.003035 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.181614 B = 9222.560549 C =10626.876809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.594 5.594 3 C 0.585 3.415 4 O -0.526 6.526 5 C -0.258 4.258 6 C 0.096 3.904 7 N -0.363 5.363 8 C 0.097 3.903 9 N -0.269 5.269 10 C 0.190 3.810 11 C 0.053 3.947 12 C -0.170 4.170 13 C -0.225 4.225 14 C -0.019 4.019 15 O -0.132 6.132 16 C 0.089 3.911 17 C 0.105 3.895 18 N -0.603 5.603 19 C -0.217 4.217 20 H 0.083 0.917 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.915 3.085 24 H -0.289 1.289 25 H -0.279 1.279 26 H -0.289 1.289 27 C 0.155 3.845 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.082 0.918 31 H 0.193 0.807 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.150 0.850 36 H 0.151 0.849 37 H 0.206 0.794 38 H 0.120 0.880 39 H 0.043 0.957 40 H 0.033 0.967 41 H 0.254 0.746 42 H 0.033 0.967 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.015 22.278 -4.468 23.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.326 5.326 3 C 0.373 3.627 4 O -0.402 6.402 5 C -0.273 4.273 6 C -0.052 4.052 7 N -0.144 5.144 8 C -0.044 4.044 9 N -0.092 5.092 10 C 0.023 3.977 11 C 0.000 4.000 12 C -0.192 4.192 13 C -0.244 4.244 14 C -0.089 4.089 15 O -0.024 6.024 16 C -0.014 4.014 17 C -0.022 4.022 18 N -0.329 5.329 19 C -0.345 4.345 20 H 0.101 0.899 21 C -0.203 4.203 22 N -0.566 5.566 23 Si 0.745 3.255 24 H -0.216 1.216 25 H -0.204 1.204 26 H -0.215 1.215 27 C 0.028 3.972 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.100 0.900 31 H 0.210 0.790 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.111 0.889 35 H 0.168 0.832 36 H 0.168 0.832 37 H 0.222 0.778 38 H 0.138 0.862 39 H 0.061 0.939 40 H 0.051 0.949 41 H 0.064 0.936 42 H 0.051 0.949 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.819 22.952 -4.226 23.831 hybrid contribution 0.030 -1.727 0.013 1.727 sum -4.790 21.225 -4.214 22.163 Atomic orbital electron populations 1.21984 0.80589 1.03521 1.00994 1.47703 1.06502 1.05801 1.72607 1.17166 0.86710 0.82090 0.76767 1.90805 1.13123 1.86878 1.49415 1.21402 0.97271 0.96648 1.12020 1.23285 0.95902 0.87055 0.98919 1.48113 1.16643 1.09726 1.39871 1.22026 0.81871 0.99105 1.01376 1.77382 0.97664 1.19498 1.14615 1.20043 0.90974 0.90395 0.96249 1.18572 0.83763 1.01075 0.96567 1.21762 0.97506 1.02816 0.97076 1.21728 0.94328 1.05292 1.03080 1.24287 0.94982 0.99464 0.90209 1.84356 1.15958 1.57021 1.45089 1.23765 0.97998 0.79721 0.99946 1.22834 0.98134 0.87324 0.93925 1.45318 1.78722 1.03126 1.05720 1.18926 1.37048 0.80345 0.98150 0.89883 1.24827 1.00796 0.98286 0.96429 1.69842 1.47848 1.34958 1.03923 0.86063 0.78118 0.84307 0.77049 1.21609 1.20426 1.21541 1.22434 0.96120 0.84042 0.94627 0.92714 0.91692 0.89952 0.78987 0.90096 0.88774 0.88857 0.83228 0.83166 0.77777 0.86173 0.93852 0.94937 0.93577 0.94933 0.91513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.92 7.80 59.85 0.47 1.38 16 2 N -0.59 -10.00 3.12 -174.91 -0.54 -10.55 16 3 C 0.59 10.41 7.55 -12.61 -0.10 10.32 16 4 O -0.53 -11.17 14.74 -12.98 -0.19 -11.36 16 5 C -0.26 -3.82 5.62 -102.91 -0.58 -4.40 16 6 C 0.10 1.01 9.15 -16.65 -0.15 0.86 16 7 N -0.36 -3.60 3.95 -67.65 -0.27 -3.87 16 8 C 0.10 0.45 11.39 59.85 0.68 1.13 16 9 N -0.27 -3.55 12.51 34.50 0.43 -3.12 16 10 C 0.19 2.88 7.29 -80.69 -0.59 2.29 16 11 C 0.05 0.81 7.03 -36.54 -0.26 0.56 16 12 C -0.17 -2.18 10.85 -39.37 -0.43 -2.61 16 13 C -0.23 -2.51 10.89 -39.81 -0.43 -2.95 16 14 C -0.02 -0.23 12.08 29.50 0.36 0.13 16 15 O -0.13 -2.15 8.94 -13.63 -0.12 -2.27 16 16 C 0.09 1.82 4.59 -67.68 -0.31 1.51 16 17 C 0.11 2.25 8.23 -8.52 -0.07 2.18 16 18 N -0.60 -15.67 3.77 -184.65 -0.70 -16.36 16 19 C -0.22 -6.14 10.74 -15.06 -0.16 -6.30 16 20 H 0.08 2.26 7.83 -52.49 -0.41 1.85 16 21 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 22 N -0.92 -27.16 11.72 55.49 0.65 -26.51 16 23 Si 0.91 22.11 29.56 -169.99 -5.02 17.09 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 C 0.15 3.61 6.67 -8.38 -0.06 3.55 16 28 H 0.05 0.58 7.31 -51.93 -0.38 0.20 16 29 H 0.06 0.68 5.84 -51.93 -0.30 0.37 16 30 H 0.08 1.14 5.97 -51.93 -0.31 0.83 16 31 H 0.19 1.37 6.11 -52.49 -0.32 1.05 16 32 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.09 0.20 8.13 -51.93 -0.42 -0.22 16 34 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 36 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.21 1.67 8.06 -52.49 -0.42 1.25 16 38 H 0.12 2.67 7.26 -51.93 -0.38 2.29 16 39 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.03 0.66 7.04 -51.93 -0.37 0.30 16 41 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 42 H 0.03 0.74 6.44 -51.93 -0.33 0.41 16 43 H 0.07 1.75 7.47 -51.93 -0.39 1.36 16 LS Contribution 361.29 15.07 5.44 5.44 Total: -1.00 -37.24 361.29 -7.32 -44.56 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -5.28 Total: -0.42 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -1.72 Total: 7.36 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -0.43 Total: -60.41 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.31 Total: -13.63 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -37.24 -7.32 -44.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042709354.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.387 kcal (2) G-P(sol) polarization free energy of solvation -37.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds