Wall clock time and date at job start Tue Mar 31 2020 06:03:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35925 * 116.99936 * 2 1 4 4 C 1.38184 * 120.21132 * 359.71899 * 3 2 1 5 5 C 1.38824 * 120.67217 * 179.72167 * 4 3 2 6 6 C 1.36720 * 120.58887 * 0.56030 * 5 4 3 7 7 C 1.39241 * 119.75627 * 359.72399 * 6 5 4 8 8 C 1.46908 * 135.44594 * 179.97438 * 7 6 5 9 9 C 1.47362 * 126.81157 * 359.96748 * 8 7 6 10 10 O 1.21616 * 119.99994 * 354.94750 * 9 8 7 11 11 N 1.34770 * 120.00068 * 174.94839 * 9 8 7 12 12 C 1.46508 * 119.99895 * 2.85092 * 11 9 8 13 13 C 1.46505 * 120.00349 * 182.84919 * 11 9 8 14 14 C 1.53947 * 113.74342 * 218.74022 * 13 11 9 15 15 N 1.47815 * 86.03478 * 222.08526 * 14 13 11 16 16 C 1.36935 * 134.45344 * 204.64796 * 15 14 13 17 17 H 1.07996 * 119.99927 * 179.87222 * 16 15 14 18 18 C 1.38820 * 119.99974 * 359.86304 * 16 15 14 19 19 N 1.31615 * 119.99886 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99535 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47168 * 90.00490 * 20 18 16 22 22 H 1.48504 * 109.46908 * 210.00060 * 20 18 16 23 23 H 1.48492 * 109.47536 * 330.00046 * 20 18 16 24 24 C 1.47575 * 91.05185 * 24.54958 * 15 14 13 25 25 N 1.31592 * 106.36934 * 180.02562 * 8 7 6 26 26 N 1.28383 * 111.94689 * 0.02562 * 25 8 7 27 27 H 0.97003 * 124.39335 * 180.02562 * 26 25 8 28 28 C 1.37107 * 111.22564 * 359.97438 * 26 25 8 29 29 H 1.08996 * 109.46912 * 60.00691 * 1 2 3 30 30 H 1.08995 * 109.47351 * 300.00501 * 1 2 3 31 31 H 1.09001 * 109.47238 * 180.02562 * 1 2 3 32 32 H 1.07992 * 119.66651 * 0.02562 * 4 3 2 33 33 H 1.08001 * 119.70609 * 180.26616 * 5 4 3 34 34 H 1.08000 * 120.12209 * 179.70033 * 6 5 4 35 35 H 1.08996 * 109.46971 * 83.93129 * 12 11 9 36 36 H 1.09003 * 109.46954 * 203.92425 * 12 11 9 37 37 H 1.09001 * 109.46931 * 323.92578 * 12 11 9 38 38 H 1.09004 * 112.94237 * 350.33668 * 13 11 9 39 39 H 1.08998 * 113.76868 * 336.34982 * 14 13 11 40 40 H 1.08997 * 113.76426 * 107.74581 * 14 13 11 41 41 H 0.96997 * 119.99700 * 180.02562 * 19 18 16 42 42 H 1.09003 * 113.77008 * 221.14860 * 24 15 14 43 43 H 1.09001 * 113.77306 * 89.75312 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2978 2.3728 -0.0059 5 6 1.9180 3.6147 -0.0001 6 6 3.2818 3.7114 -0.0001 7 6 4.0566 2.5544 0.0000 8 6 5.4954 2.2581 -0.0004 9 6 6.5983 3.2355 -0.0017 10 8 6.3574 4.4239 -0.0953 11 7 7.8737 2.8125 0.1009 12 6 8.1680 1.3781 0.1508 13 6 8.9660 3.7869 0.1625 14 6 10.2211 3.3614 -0.6208 15 7 10.9896 3.8713 0.5344 16 6 12.2627 4.3456 0.7052 17 1 12.5921 4.6687 1.6817 18 6 13.1301 4.4111 -0.3767 19 7 12.7285 4.0176 -1.5667 20 14 14.8670 5.0575 -0.1433 21 1 15.7729 3.9311 0.1971 22 1 15.3284 5.7014 -1.3994 23 1 14.8808 6.0538 0.9576 24 6 9.8335 3.6663 1.4285 25 7 5.6040 0.9466 -0.0006 26 7 4.4568 0.3702 -0.0010 27 1 4.3266 -0.5910 -0.0008 28 6 3.4395 1.2893 -0.0004 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 0.2195 2.3139 -0.0100 33 1 1.3179 4.5127 -0.0005 34 1 3.7564 4.6815 -0.0004 35 1 8.2102 0.9805 -0.8632 36 1 9.1279 1.2211 0.6428 37 1 7.3850 0.8658 0.7098 38 1 8.6398 4.8049 -0.0506 39 1 10.3056 2.2841 -0.7637 40 1 10.3787 3.9272 -1.5390 41 1 13.3347 4.0630 -2.3226 42 1 9.6823 4.4750 2.1435 43 1 9.8039 2.6787 1.8889 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042800709.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:18 Heat of formation + Delta-G solvation = 97.139107 kcal Electronic energy + Delta-G solvation = -27579.031933 eV Core-core repulsion = 23629.132086 eV Total energy + Delta-G solvation = -3949.899847 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.67980 -39.87881 -39.42014 -37.47651 -37.01183 -34.41545 -32.37404 -31.75002 -30.66592 -29.55750 -27.76316 -27.62315 -26.58828 -24.76737 -24.61431 -23.22897 -22.68841 -22.14035 -19.84374 -18.89338 -18.29007 -17.97572 -17.20823 -16.74433 -16.45568 -16.17412 -15.83302 -15.71299 -15.22558 -15.08188 -14.87993 -14.53383 -13.86721 -13.73958 -13.63673 -12.95046 -12.81239 -12.61785 -12.37227 -12.21672 -11.81473 -11.75482 -11.66902 -11.51286 -11.47273 -11.25482 -10.87788 -10.76909 -10.64342 -10.24062 -10.05867 -9.91532 -9.70307 -9.52136 -9.07791 -8.77725 -8.12085 -7.87318 -6.88361 -5.75981 -3.08764 0.65666 1.08920 1.81825 2.49263 2.74052 3.26637 3.29694 3.41783 3.46380 3.48393 3.65097 4.15066 4.31277 4.47913 4.50772 4.66990 4.70964 4.73573 4.90975 5.06586 5.12742 5.21822 5.27793 5.48775 5.50624 5.56872 5.63838 5.78525 5.95934 6.05821 6.12055 6.23664 6.25686 6.32548 6.40298 6.48743 6.62035 6.69451 6.85851 6.94042 7.23521 7.37431 7.54743 7.64407 7.80187 7.97865 8.44673 9.04946 9.71035 10.58299 11.41273 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.036553 B = 0.002303 C = 0.002224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.824612 B =12154.814381 C =12584.930359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.323 6.323 3 C 0.126 3.874 4 C -0.183 4.183 5 C -0.104 4.104 6 C -0.076 4.076 7 C -0.073 4.073 8 C 0.011 3.989 9 C 0.597 3.403 10 O -0.535 6.535 11 N -0.582 5.582 12 C 0.074 3.926 13 C 0.090 3.910 14 C 0.158 3.842 15 N -0.607 5.607 16 C -0.222 4.222 17 H 0.082 0.918 18 C -0.008 4.008 19 N -0.920 5.920 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.280 1.280 24 C 0.109 3.891 25 N -0.195 5.195 26 N -0.410 5.410 27 H 0.448 0.552 28 C 0.045 3.955 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.100 0.900 32 H 0.135 0.865 33 H 0.133 0.867 34 H 0.143 0.857 35 H 0.056 0.944 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.118 0.882 39 H 0.033 0.967 40 H 0.078 0.922 41 H 0.254 0.746 42 H 0.048 0.952 43 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.058 -9.542 2.964 28.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.237 6.237 3 C 0.078 3.922 4 C -0.204 4.204 5 C -0.123 4.123 6 C -0.096 4.096 7 C -0.081 4.081 8 C -0.160 4.160 9 C 0.383 3.617 10 O -0.411 6.411 11 N -0.314 5.314 12 C -0.070 4.070 13 C -0.013 4.013 14 C 0.032 3.968 15 N -0.333 5.333 16 C -0.349 4.349 17 H 0.100 0.900 18 C -0.204 4.204 19 N -0.567 5.567 20 Si 0.744 3.256 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.205 1.205 24 C -0.018 4.018 25 N -0.026 5.026 26 N -0.129 5.129 27 H 0.294 0.706 28 C -0.068 4.068 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.119 0.881 32 H 0.153 0.847 33 H 0.150 0.850 34 H 0.160 0.840 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.136 0.864 39 H 0.051 0.949 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -25.946 -9.837 2.805 27.890 hybrid contribution 0.099 0.098 0.062 0.152 sum -25.847 -9.739 2.867 27.770 Atomic orbital electron populations 1.23066 0.77767 1.04073 1.01638 1.86005 1.21925 1.26541 1.89229 1.17732 0.87646 0.85306 1.01483 1.20996 0.99811 0.91452 1.08159 1.20582 0.94199 0.96983 1.00536 1.20348 0.92738 0.97820 0.98712 1.19237 0.91304 0.92445 1.05079 1.22919 0.92876 0.89523 1.10637 1.16738 0.81238 0.86290 0.77461 1.90777 1.83481 1.15685 1.51120 1.47900 1.05330 1.08151 1.70007 1.22097 1.02669 0.79861 1.02340 1.24134 0.84367 0.93444 0.99366 1.22678 0.83504 0.96987 0.93675 1.45710 1.09695 1.73025 1.04907 1.18991 0.85987 1.34885 0.95052 0.90034 1.24810 0.98539 1.01591 0.95501 1.69816 1.35280 1.52386 0.99232 0.86086 0.84107 0.78386 0.76977 1.21628 1.21600 1.20549 1.22981 0.86845 0.98255 0.93745 1.73232 1.07240 1.09188 1.12902 1.43159 1.00663 1.09495 1.59588 0.70649 1.18344 0.88463 0.90403 1.09595 0.92383 0.92397 0.88148 0.84727 0.84957 0.83958 0.92494 0.90511 0.89671 0.86365 0.94882 0.90420 0.93557 0.93363 0.94576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.70 10.51 -19.50 -0.20 -2.90 16 3 C 0.13 1.25 6.70 -39.11 -0.26 0.99 16 4 C -0.18 -1.55 9.03 -39.38 -0.36 -1.91 16 5 C -0.10 -0.96 9.97 -39.91 -0.40 -1.36 16 6 C -0.08 -0.93 9.86 -39.76 -0.39 -1.32 16 7 C -0.07 -1.01 6.34 -105.06 -0.67 -1.68 16 8 C 0.01 0.16 7.01 -80.75 -0.57 -0.40 16 9 C 0.60 10.69 7.67 -12.55 -0.10 10.60 16 10 O -0.54 -10.82 15.87 5.26 0.08 -10.74 16 11 N -0.58 -10.34 3.09 -177.03 -0.55 -10.89 16 12 C 0.07 1.10 8.33 59.85 0.50 1.60 16 13 C 0.09 1.86 4.41 -70.14 -0.31 1.55 16 14 C 0.16 3.78 6.93 -2.84 -0.02 3.76 16 15 N -0.61 -15.85 3.70 -177.88 -0.66 -16.51 16 16 C -0.22 -6.29 10.70 -15.06 -0.16 -6.45 16 17 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 18 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 19 N -0.92 -27.52 11.39 55.49 0.63 -26.89 16 20 Si 0.91 22.33 29.55 -169.99 -5.02 17.31 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C 0.11 2.32 8.43 -2.97 -0.03 2.29 16 25 N -0.19 -2.55 8.64 34.46 0.30 -2.25 16 26 N -0.41 -4.41 6.85 32.41 0.22 -4.19 16 27 H 0.45 3.32 8.96 -190.49 -1.71 1.62 16 28 C 0.05 0.54 7.32 -84.06 -0.62 -0.08 16 29 H 0.06 0.20 7.65 -51.93 -0.40 -0.19 16 30 H 0.06 0.20 7.67 -51.93 -0.40 -0.20 16 31 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.14 0.74 6.27 -52.49 -0.33 0.41 16 33 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.14 1.81 7.64 -52.49 -0.40 1.40 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.08 1.19 6.13 -51.93 -0.32 0.87 16 37 H 0.09 1.14 5.38 -51.93 -0.28 0.86 16 38 H 0.12 2.60 7.21 -51.93 -0.37 2.23 16 39 H 0.03 0.79 6.69 -51.93 -0.35 0.44 16 40 H 0.08 2.08 7.16 -51.93 -0.37 1.71 16 41 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.04 0.73 6.93 -51.93 -0.36 0.37 16 LS Contribution 355.28 15.07 5.35 5.35 Total: -1.00 -34.45 355.28 -8.84 -43.29 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -6.52 Total: 0.02 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: -2.47 Total: 8.41 kcal Atomic # 7 Polarization: -60.68 SS G_CDS: -0.05 Total: -60.74 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.12 Total: -13.64 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.45 -8.84 -43.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042800709.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.427 kcal (2) G-P(sol) polarization free energy of solvation -34.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.288 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds