Wall clock time and date at job start Tue Mar 31 2020 06:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35644 * 117.00337 * 2 1 4 4 C 1.40752 * 120.33113 * 0.02562 * 3 2 1 5 5 C 1.35012 * 120.04521 * 179.97438 * 4 3 2 6 6 N 1.36027 * 120.85864 * 0.02562 * 5 4 3 7 7 C 1.36658 * 120.88881 * 0.14179 * 6 5 4 8 8 C 1.37982 * 120.33183 * 180.35012 * 3 2 1 9 9 N 1.33329 * 108.60805 * 180.26618 * 7 6 5 10 10 C 1.32320 * 109.85312 * 359.74854 * 9 7 6 11 11 C 1.38506 * 108.26056 * 0.02562 * 10 9 7 12 12 C 1.41647 * 126.78977 * 179.97438 * 11 10 9 13 13 O 1.21791 * 120.00010 * 188.27441 * 12 11 10 14 14 N 1.34777 * 119.99949 * 8.27375 * 12 11 10 15 15 C 1.46505 * 119.99958 * 6.60227 * 14 12 11 16 16 C 1.46502 * 120.00079 * 186.60038 * 14 12 11 17 17 C 1.53497 * 114.20689 * 240.00145 * 16 14 12 18 18 N 1.47060 * 87.98519 * 220.14457 * 17 16 14 19 19 C 1.36944 * 136.06166 * 207.08401 * 18 17 16 20 20 H 1.08003 * 119.99057 * 354.76894 * 19 18 17 21 21 C 1.38804 * 120.00427 * 174.76921 * 19 18 17 22 22 N 1.31611 * 120.00302 * 184.04641 * 21 19 18 23 23 Si 1.86805 * 120.00025 * 4.04388 * 21 19 18 24 24 H 1.48498 * 109.47215 * 174.38362 * 23 21 19 25 25 H 1.48503 * 109.47226 * 294.38696 * 23 21 19 26 26 H 1.48505 * 109.47083 * 54.38204 * 23 21 19 27 27 C 1.47070 * 87.88440 * 27.34523 * 18 17 16 28 28 H 1.08991 * 109.47338 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47028 * 300.00579 * 1 2 3 30 30 H 1.08999 * 109.46527 * 59.99907 * 1 2 3 31 31 H 1.08008 * 119.98260 * 359.95037 * 4 3 2 32 32 H 1.07999 * 119.56992 * 179.97438 * 5 4 3 33 33 H 1.07999 * 120.38565 * 359.53382 * 8 3 2 34 34 H 1.07997 * 125.86866 * 179.97438 * 10 9 7 35 35 H 1.08995 * 109.46984 * 276.09803 * 15 14 12 36 36 H 1.08995 * 109.46772 * 36.10057 * 15 14 12 37 37 H 1.09002 * 109.46709 * 156.09642 * 15 14 12 38 38 H 1.08996 * 113.28209 * 13.06567 * 16 14 12 39 39 H 1.09006 * 113.46549 * 105.37024 * 17 16 14 40 40 H 1.08995 * 113.46889 * 334.93041 * 17 16 14 41 41 H 0.97001 * 119.99764 * 4.99998 * 22 21 19 42 42 H 1.08995 * 113.46918 * 87.43620 * 27 18 17 43 43 H 1.09003 * 113.46322 * 217.87787 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2852 2.3935 0.0005 5 6 1.9042 3.5933 0.0011 6 7 3.2618 3.6780 0.0005 7 6 4.0350 2.5512 -0.0034 8 6 3.4224 1.2887 -0.0073 9 7 5.3176 2.9153 0.0029 10 6 5.4100 4.2353 0.0053 11 6 4.1282 4.7601 0.0010 12 6 3.7730 6.1313 0.0022 13 8 2.6092 6.4587 0.1498 14 7 4.7228 7.0736 -0.1600 15 6 6.0971 6.6808 -0.4813 16 6 4.3810 8.4908 -0.0149 17 6 4.6382 9.3322 -1.2727 18 7 5.1373 10.4000 -0.3932 19 6 5.2245 11.7654 -0.4515 20 1 4.9418 12.2864 -1.3543 21 6 5.6761 12.4797 0.6497 22 7 5.6847 13.7955 0.6222 23 14 6.2716 11.5734 2.1707 24 1 6.8236 12.5496 3.1442 25 1 5.1350 10.8455 2.7900 26 1 7.3297 10.6045 1.7872 27 6 5.5078 9.3556 0.5737 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 0.2063 2.3429 0.0002 32 1 1.3138 4.4976 0.0011 33 1 4.0218 0.3904 -0.0055 34 1 6.3272 4.8054 0.0106 35 1 6.6272 6.4291 0.4372 36 1 6.0821 5.8137 -1.1415 37 1 6.6043 7.5075 -0.9788 38 1 3.4039 8.6539 0.4398 39 1 3.7278 9.6014 -1.8085 40 1 5.4041 8.9140 -1.9256 41 1 5.3087 14.2672 -0.1375 42 1 6.5031 8.9435 0.4076 43 1 5.3384 9.6446 1.6110 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043349044.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:24 Heat of formation + Delta-G solvation = 121.499914 kcal Electronic energy + Delta-G solvation = -27790.421273 eV Core-core repulsion = 23841.577789 eV Total energy + Delta-G solvation = -3948.843483 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.21022 -40.32324 -39.79296 -38.05563 -36.92700 -34.86142 -33.46498 -32.35606 -30.84708 -29.81612 -28.10794 -27.52821 -27.10505 -25.44443 -24.60562 -23.75224 -22.33062 -22.23415 -20.43322 -19.20531 -18.55100 -17.87122 -17.61406 -17.38300 -16.81541 -16.69166 -16.11532 -16.08777 -15.38133 -15.33430 -15.09526 -14.81080 -14.24868 -14.04091 -13.76621 -13.69556 -13.20180 -13.06715 -13.03662 -12.60053 -12.20185 -12.04630 -12.00362 -11.91471 -11.65049 -11.57752 -11.37093 -10.62406 -10.58088 -10.43836 -10.38312 -9.89141 -9.41164 -9.29431 -9.19495 -8.97603 -8.44664 -7.92927 -7.22041 -6.35518 -3.29517 0.29102 0.52555 1.98990 2.05143 2.51402 3.10096 3.13066 3.26839 3.37315 3.40848 3.62369 3.95539 4.06444 4.14735 4.48151 4.51674 4.55238 4.59245 4.61712 4.72913 4.78812 4.91975 4.93748 5.02959 5.04638 5.23885 5.35951 5.39548 5.44912 5.52474 5.57877 5.74282 5.75973 5.89116 6.09767 6.14714 6.18691 6.32472 6.39325 6.53953 6.69185 6.87932 7.01752 7.40565 7.44718 8.14682 8.18740 8.92193 9.43685 10.27256 11.15890 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.029321 B = 0.002529 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.727361 B =11067.303523 C =11440.614859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.304 6.304 3 C 0.158 3.842 4 C -0.218 4.218 5 C 0.124 3.876 6 N -0.340 5.340 7 C 0.279 3.721 8 C -0.147 4.147 9 N -0.502 5.502 10 C 0.096 3.904 11 C -0.146 4.146 12 C 0.596 3.404 13 O -0.559 6.559 14 N -0.587 5.587 15 C 0.055 3.945 16 C 0.106 3.894 17 C 0.112 3.888 18 N -0.620 5.620 19 C -0.303 4.303 20 H 0.085 0.915 21 C -0.023 4.023 22 N -0.931 5.931 23 Si 1.072 2.928 24 H -0.294 1.294 25 H -0.291 1.291 26 H -0.289 1.289 27 C 0.083 3.917 28 H 0.106 0.894 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.161 0.839 32 H 0.183 0.817 33 H 0.162 0.838 34 H 0.211 0.789 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.126 0.874 39 H 0.051 0.949 40 H 0.041 0.959 41 H 0.262 0.738 42 H 0.049 0.951 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.775 -29.434 -1.811 30.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.216 6.216 3 C 0.105 3.895 4 C -0.239 4.239 5 C -0.002 4.002 6 N -0.012 5.012 7 C 0.040 3.960 8 C -0.169 4.169 9 N -0.222 5.222 10 C -0.063 4.063 11 C -0.259 4.259 12 C 0.387 3.613 13 O -0.440 6.440 14 N -0.319 5.319 15 C -0.088 4.088 16 C 0.003 3.997 17 C -0.016 4.016 18 N -0.348 5.348 19 C -0.429 4.429 20 H 0.102 0.898 21 C -0.222 4.222 22 N -0.573 5.573 23 Si 0.905 3.095 24 H -0.221 1.221 25 H -0.219 1.219 26 H -0.216 1.216 27 C -0.044 4.044 28 H 0.124 0.876 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.179 0.821 32 H 0.200 0.800 33 H 0.180 0.820 34 H 0.227 0.773 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.144 0.856 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -6.963 -29.397 -0.262 30.212 hybrid contribution -1.498 0.461 -1.638 2.267 sum -8.461 -28.936 -1.900 30.208 Atomic orbital electron populations 1.23208 0.77396 1.04705 1.01881 1.86047 1.22072 1.25537 1.87920 1.18876 0.91588 0.84516 0.94477 1.21102 1.01740 0.90430 1.10589 1.21863 0.81623 1.00819 0.95903 1.42594 1.05996 1.08086 1.44502 1.20623 0.87025 0.86744 1.01657 1.19366 0.91282 0.94949 1.11286 1.70651 1.13976 1.13277 1.24305 1.24341 0.96671 0.90325 0.94926 1.19833 0.89840 0.88772 1.27413 1.15391 0.85413 0.83265 0.77272 1.90792 1.18128 1.82929 1.52178 1.47508 1.09093 1.06416 1.68852 1.22491 0.82952 1.02409 1.00932 1.23611 1.00739 0.75730 0.99666 1.22760 0.97408 0.87861 0.93530 1.45784 1.70921 1.00520 1.17602 1.20137 1.44436 0.77163 1.01156 0.89767 1.25729 0.99759 0.96218 1.00490 1.70916 1.47094 1.05813 1.33497 0.83688 0.76029 0.73670 0.76073 1.22137 1.21925 1.21561 1.23297 0.95839 0.88812 0.96411 0.87603 0.92081 0.92102 0.82141 0.79979 0.82031 0.77294 0.91492 0.90087 0.89456 0.85622 0.93093 0.94145 0.92833 0.93336 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 9.82 101.05 0.99 1.07 16 2 O -0.30 -2.19 10.49 -18.63 -0.20 -2.39 16 3 C 0.16 1.34 6.72 -38.73 -0.26 1.08 16 4 C -0.22 -1.65 8.98 -39.78 -0.36 -2.01 16 5 C 0.12 1.28 10.49 -16.84 -0.18 1.10 16 6 N -0.34 -4.33 2.97 -60.20 -0.18 -4.51 16 7 C 0.28 3.47 7.76 -156.00 -1.21 2.26 16 8 C -0.15 -1.48 10.09 -38.89 -0.39 -1.87 16 9 N -0.50 -6.62 11.25 -12.31 -0.14 -6.75 16 10 C 0.10 1.15 9.69 -17.24 -0.17 0.99 16 11 C -0.15 -2.01 6.65 -83.39 -0.55 -2.57 16 12 C 0.60 9.34 7.46 -14.96 -0.11 9.23 16 13 O -0.56 -10.17 14.93 5.11 0.08 -10.10 16 14 N -0.59 -8.80 3.12 -176.95 -0.55 -9.35 16 15 C 0.05 0.60 7.43 59.85 0.44 1.05 16 16 C 0.11 1.94 4.54 -67.68 -0.31 1.64 16 17 C 0.11 2.21 8.23 -8.52 -0.07 2.14 16 18 N -0.62 -15.13 3.69 -184.64 -0.68 -15.81 16 19 C -0.30 -8.69 11.09 -15.06 -0.17 -8.85 16 20 H 0.08 2.54 8.05 -52.48 -0.42 2.12 16 21 C -0.02 -0.68 5.50 -17.44 -0.10 -0.78 16 22 N -0.93 -29.27 13.70 55.49 0.76 -28.51 16 23 Si 1.07 26.64 25.10 -169.99 -4.27 22.37 16 24 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 25 H -0.29 -6.87 6.33 56.52 0.36 -6.51 16 26 H -0.29 -6.60 6.69 56.52 0.38 -6.22 16 27 C 0.08 1.71 5.33 -8.38 -0.04 1.66 16 28 H 0.11 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.06 0.15 7.68 -51.93 -0.40 -0.25 16 30 H 0.06 0.14 7.68 -51.93 -0.40 -0.26 16 31 H 0.16 0.68 6.39 -52.48 -0.34 0.34 16 32 H 0.18 1.89 6.82 -52.49 -0.36 1.53 16 33 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 34 H 0.21 1.89 4.32 -52.49 -0.23 1.66 16 35 H 0.07 0.61 7.20 -51.93 -0.37 0.24 16 36 H 0.08 0.74 5.46 -51.93 -0.28 0.45 16 37 H 0.09 1.00 5.94 -51.93 -0.31 0.69 16 38 H 0.13 2.49 7.35 -51.93 -0.38 2.11 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.04 0.73 7.06 -51.93 -0.37 0.37 16 41 H 0.26 8.12 8.73 -40.82 -0.36 7.76 16 42 H 0.05 0.92 6.36 -51.93 -0.33 0.59 16 43 H 0.06 1.31 4.01 -51.93 -0.21 1.11 16 LS Contribution 342.54 15.07 5.16 5.16 Total: -1.00 -36.39 342.54 -7.37 -43.77 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -4.88 Total: -0.01 kcal Atomic # 6 Polarization: 8.61 SS G_CDS: -2.48 Total: 6.13 kcal Atomic # 7 Polarization: -64.15 SS G_CDS: -0.79 Total: -64.94 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.12 Total: -12.49 kcal Atomic # 14 Polarization: 26.64 SS G_CDS: -4.27 Total: 22.37 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.39 -7.37 -43.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043349044.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.267 kcal (2) G-P(sol) polarization free energy of solvation -36.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds