Wall clock time and date at job start Tue Mar 31 2020 06:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34776 * 120.00054 * 2 1 4 4 O 1.21625 * 120.00007 * 175.22068 * 3 2 1 5 5 C 1.47240 * 119.99873 * 355.21894 * 3 2 1 6 6 C 1.38026 * 126.81243 * 45.95326 * 5 3 2 7 7 N 1.34110 * 107.87981 * 179.86880 * 6 5 3 8 8 C 1.46496 * 125.15384 * 180.11792 * 7 6 5 9 9 N 1.39769 * 109.68654 * 0.40245 * 7 6 5 10 10 C 1.31357 * 109.09163 * 359.75027 * 9 7 6 11 11 C 1.48323 * 126.51791 * 179.97438 * 10 9 7 12 12 C 1.46732 * 127.11817 * 325.04645 * 11 10 9 13 13 C 1.34362 * 106.02827 * 179.97438 * 12 11 10 14 14 O 1.34167 * 108.99691 * 359.97438 * 13 12 11 15 15 C 1.34086 * 110.75514 * 359.76386 * 14 13 12 16 16 C 1.46507 * 119.99880 * 180.02562 * 2 1 3 17 17 C 1.53495 * 114.20536 * 299.99712 * 16 2 1 18 18 N 1.47068 * 87.98446 * 87.72012 * 17 16 2 19 19 C 1.36935 * 136.05705 * 207.08301 * 18 17 16 20 20 H 1.07996 * 119.99902 * 6.65169 * 19 18 17 21 21 C 1.38805 * 119.99973 * 186.64372 * 19 18 17 22 22 N 1.31618 * 120.00124 * 194.73801 * 21 19 18 23 23 Si 1.86804 * 119.99849 * 14.74016 * 21 19 18 24 24 H 1.48498 * 109.47050 * 269.99248 * 23 21 19 25 25 H 1.48494 * 109.47235 * 29.99876 * 23 21 19 26 26 H 1.48500 * 109.47043 * 149.99909 * 23 21 19 27 27 C 1.47069 * 87.88384 * 27.34017 * 18 17 16 28 28 H 1.09000 * 109.47101 * 274.46545 * 1 2 3 29 29 H 1.08999 * 109.47066 * 34.46776 * 1 2 3 30 30 H 1.09000 * 109.47193 * 154.46881 * 1 2 3 31 31 H 1.07998 * 126.05888 * 0.02562 * 6 5 3 32 32 H 1.09005 * 109.47274 * 270.30471 * 8 7 6 33 33 H 1.08998 * 109.47392 * 30.30724 * 8 7 6 34 34 H 1.09003 * 109.47474 * 150.30593 * 8 7 6 35 35 H 1.08008 * 126.98904 * 359.97438 * 12 11 10 36 36 H 1.07994 * 125.50259 * 180.02562 * 13 12 11 37 37 H 1.08001 * 125.77397 * 180.26609 * 15 14 13 38 38 H 1.09004 * 113.27807 * 166.93410 * 16 2 1 39 39 H 1.09001 * 113.46675 * 332.93629 * 17 16 2 40 40 H 1.09001 * 113.46519 * 202.50014 * 17 16 2 41 41 H 0.96998 * 119.99912 * 354.94829 * 22 21 19 42 42 H 1.09002 * 113.46801 * 87.43884 * 27 18 17 43 43 H 1.08994 * 113.46763 * 217.87854 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3519 1.1690 0.0878 5 6 1.4065 2.4401 -0.1063 6 6 0.2736 2.8034 0.5935 7 7 -0.0716 4.0397 0.2050 8 6 -1.2208 4.7932 0.7124 9 7 0.8276 4.4976 -0.7621 10 6 1.7322 3.5706 -0.9809 11 6 2.8671 3.6519 -1.9324 12 6 2.8809 4.3193 -3.2391 13 6 4.1145 4.1328 -3.7379 14 8 4.8378 3.4217 -2.8596 15 6 4.1107 3.1296 -1.7715 16 6 2.1975 -1.2688 -0.0006 17 6 1.9060 -2.1643 1.2115 18 7 0.7772 -2.7296 0.4569 19 6 -0.4241 -3.3093 0.7665 20 1 -0.7635 -3.3342 1.7914 21 6 -1.2057 -3.8649 -0.2371 22 7 -2.4673 -4.1575 -0.0028 23 14 -0.4668 -4.1974 -1.9203 24 1 -0.6462 -3.0030 -2.7843 25 1 0.9817 -4.4909 -1.7758 26 1 -1.1487 -5.3626 -2.5388 27 6 1.5094 -2.4040 -0.7763 28 1 -0.3633 0.0800 1.0245 29 1 -0.3633 0.8472 -0.5816 30 1 -0.3633 -0.9273 -0.4429 31 1 -0.2418 2.2001 1.3261 32 1 -2.0959 4.5783 0.0990 33 1 -1.4197 4.5019 1.7438 34 1 -1.0022 5.8604 0.6721 35 1 2.0653 4.8522 -3.7054 36 1 4.4672 4.4972 -4.6913 37 1 4.4549 2.5712 -0.9135 38 1 3.2576 -1.1541 -0.2269 39 1 1.6006 -1.6088 2.0982 40 1 2.6958 -2.8868 1.4173 41 1 -2.8315 -4.0537 0.8903 42 1 2.1947 -3.1897 -1.0945 43 1 0.8662 -2.0528 -1.5831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043446819.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:59 Heat of formation + Delta-G solvation = 142.908404 kcal Electronic energy + Delta-G solvation = -28541.153902 eV Core-core repulsion = 24593.238761 eV Total energy + Delta-G solvation = -3947.915142 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.34371 -41.16629 -39.71406 -37.81590 -34.32274 -34.12736 -32.42644 -32.09996 -30.43715 -29.71163 -28.20341 -26.96644 -26.20496 -25.29045 -23.79873 -22.44759 -21.92280 -21.09802 -20.36385 -19.45211 -18.59665 -17.70273 -17.49536 -16.92004 -16.36301 -15.94064 -15.83957 -15.59477 -15.16720 -14.75073 -14.58348 -14.18406 -13.82627 -13.71783 -13.30291 -13.26483 -13.04779 -12.90654 -12.78417 -12.64488 -12.37474 -12.17545 -11.97678 -11.45772 -11.34065 -10.98085 -10.86476 -10.59719 -10.28821 -10.23490 -9.71570 -9.64440 -9.29971 -9.27058 -8.75439 -8.74482 -8.36348 -8.10737 -7.23412 -6.35789 -3.28524 1.44202 1.62727 2.02515 2.19984 2.84422 3.08115 3.14660 3.37207 3.42858 3.47789 3.58175 4.20029 4.39544 4.52962 4.68818 4.71419 4.84128 4.89073 5.03236 5.12729 5.14242 5.17609 5.34339 5.36206 5.41643 5.53389 5.65218 5.83865 5.87577 5.91781 6.00900 6.19502 6.21011 6.23686 6.27318 6.37067 6.39853 6.42695 6.66149 6.68701 7.04301 7.06222 7.12037 7.49003 7.79677 8.17875 8.45847 8.91405 9.44027 10.31737 11.13724 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.012733 B = 0.003921 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.535522 B = 7138.665404 C = 8119.516883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.573 5.573 3 C 0.599 3.401 4 O -0.553 6.553 5 C -0.275 4.275 6 C 0.104 3.896 7 N -0.367 5.367 8 C 0.098 3.902 9 N -0.287 5.287 10 C 0.198 3.802 11 C -0.139 4.139 12 C -0.188 4.188 13 C -0.048 4.048 14 O -0.180 6.180 15 C 0.027 3.973 16 C 0.101 3.899 17 C 0.107 3.893 18 N -0.622 5.622 19 C -0.302 4.302 20 H 0.082 0.918 21 C -0.022 4.022 22 N -0.932 5.932 23 Si 1.056 2.944 24 H -0.294 1.294 25 H -0.281 1.281 26 H -0.296 1.296 27 C 0.091 3.909 28 H 0.051 0.949 29 H 0.055 0.945 30 H 0.103 0.897 31 H 0.187 0.813 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.151 0.849 36 H 0.203 0.797 37 H 0.229 0.771 38 H 0.107 0.893 39 H 0.047 0.953 40 H 0.046 0.954 41 H 0.261 0.739 42 H 0.059 0.941 43 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.257 18.664 -1.942 20.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.303 5.303 3 C 0.388 3.612 4 O -0.433 6.433 5 C -0.290 4.290 6 C -0.045 4.045 7 N -0.147 5.147 8 C -0.043 4.043 9 N -0.107 5.107 10 C 0.030 3.970 11 C -0.142 4.142 12 C -0.207 4.207 13 C -0.114 4.114 14 O -0.076 6.076 15 C -0.044 4.044 16 C -0.004 4.004 17 C -0.021 4.021 18 N -0.351 5.351 19 C -0.428 4.428 20 H 0.099 0.901 21 C -0.221 4.221 22 N -0.574 5.574 23 Si 0.888 3.112 24 H -0.222 1.222 25 H -0.207 1.207 26 H -0.223 1.223 27 C -0.036 4.036 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.122 0.878 31 H 0.204 0.796 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.169 0.831 36 H 0.220 0.780 37 H 0.245 0.755 38 H 0.125 0.875 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.973 19.177 -3.624 20.725 hybrid contribution -0.056 -0.443 1.928 1.980 sum 6.917 18.734 -1.696 20.042 Atomic orbital electron populations 1.21965 0.78493 1.04315 1.01413 1.47211 1.07464 1.04420 1.71157 1.17121 0.86256 0.82149 0.75679 1.90557 1.13818 1.87216 1.51744 1.21149 1.01686 0.97738 1.08396 1.23037 0.95031 0.87198 0.99186 1.48070 1.23051 1.12400 1.31136 1.21976 0.84957 0.97623 0.99763 1.77315 1.03272 1.21596 1.08566 1.20709 0.92764 0.89636 0.93882 1.18965 0.92454 1.07623 0.95164 1.22766 0.98349 1.04580 0.95051 1.23841 0.91428 0.99922 0.96248 1.83947 1.41200 1.57098 1.25318 1.25083 0.89966 0.99136 0.90169 1.22501 0.95723 0.82864 0.99319 1.22806 0.90607 0.93545 0.95133 1.46425 1.15055 1.72369 1.01270 1.20116 0.91278 1.35144 0.96266 0.90065 1.25682 0.95052 0.97837 1.03548 1.70909 1.11181 1.52258 1.23021 0.83862 0.75098 0.76599 0.75613 1.22152 1.20695 1.22292 1.23122 0.94301 0.93721 0.92428 0.93025 0.92619 0.87842 0.79622 0.90214 0.89046 0.89055 0.83143 0.78038 0.75543 0.87524 0.93464 0.93634 0.92857 0.92403 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.36 8.41 59.84 0.50 1.87 16 2 N -0.57 -9.88 3.12 -174.89 -0.55 -10.42 16 3 C 0.60 10.10 7.41 -12.60 -0.09 10.00 16 4 O -0.55 -9.99 13.46 5.26 0.07 -9.92 16 5 C -0.27 -4.17 5.29 -102.95 -0.54 -4.72 16 6 C 0.10 1.28 9.36 -16.63 -0.16 1.12 16 7 N -0.37 -4.29 3.95 -67.64 -0.27 -4.56 16 8 C 0.10 0.65 11.39 59.84 0.68 1.34 16 9 N -0.29 -4.17 12.50 34.58 0.43 -3.74 16 10 C 0.20 3.06 7.34 -80.55 -0.59 2.47 16 11 C -0.14 -2.05 6.23 -103.17 -0.64 -2.69 16 12 C -0.19 -2.32 11.15 -37.52 -0.42 -2.73 16 13 C -0.05 -0.51 12.05 29.36 0.35 -0.16 16 14 O -0.18 -2.32 10.55 6.66 0.07 -2.25 16 15 C 0.03 0.38 11.22 29.88 0.34 0.71 16 16 C 0.10 1.81 4.65 -67.68 -0.32 1.50 16 17 C 0.11 2.04 8.31 -8.51 -0.07 1.97 16 18 N -0.62 -14.21 2.33 -184.62 -0.43 -14.64 16 19 C -0.30 -8.07 10.50 -15.06 -0.16 -8.23 16 20 H 0.08 2.32 8.06 -52.49 -0.42 1.90 16 21 C -0.02 -0.61 5.50 -17.43 -0.10 -0.71 16 22 N -0.93 -28.02 13.70 55.49 0.76 -27.26 16 23 Si 1.06 25.63 25.48 -169.99 -4.33 21.30 16 24 H -0.29 -6.86 6.97 56.52 0.39 -6.47 16 25 H -0.28 -6.34 5.60 56.52 0.32 -6.02 16 26 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 27 C 0.09 1.84 4.63 -8.37 -0.04 1.80 16 28 H 0.05 0.82 7.55 -51.93 -0.39 0.43 16 29 H 0.06 0.84 6.15 -51.93 -0.32 0.52 16 30 H 0.10 2.13 5.14 -51.93 -0.27 1.86 16 31 H 0.19 1.81 7.01 -52.49 -0.37 1.44 16 32 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.09 0.39 8.13 -51.93 -0.42 -0.03 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.15 1.63 8.06 -52.48 -0.42 1.21 16 36 H 0.20 1.26 8.06 -52.49 -0.42 0.83 16 37 H 0.23 3.29 5.59 -52.49 -0.29 3.00 16 38 H 0.11 1.80 7.33 -51.93 -0.38 1.42 16 39 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.26 7.76 8.73 -40.82 -0.36 7.40 16 42 H 0.06 1.14 7.05 -51.93 -0.37 0.78 16 43 H 0.06 1.16 5.31 -51.93 -0.28 0.88 16 LS Contribution 352.96 15.07 5.32 5.32 Total: -1.00 -33.94 352.96 -5.46 -39.40 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.29 Total: 3.22 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -1.25 Total: 3.54 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: -0.05 Total: -60.61 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.14 Total: -12.17 kcal Atomic # 14 Polarization: 25.63 SS G_CDS: -4.33 Total: 21.30 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.94 -5.46 -39.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043446819.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.311 kcal (2) G-P(sol) polarization free energy of solvation -33.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds