Wall clock time and date at job start Tue Mar 31 2020 06:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36014 * 117.00113 * 2 1 4 4 C 1.40516 * 119.89599 * 0.02562 * 3 2 1 5 5 C 1.36388 * 119.38122 * 179.97438 * 4 3 2 6 6 C 1.40085 * 119.34406 * 359.72544 * 5 4 3 7 7 C 1.40963 * 132.78089 * 179.54472 * 6 5 4 8 8 C 1.46537 * 126.58806 * 0.76850 * 7 6 5 9 9 O 1.21728 * 119.99703 * 7.57149 * 8 7 6 10 10 N 1.34777 * 120.00419 * 187.57792 * 8 7 6 11 11 C 1.46498 * 119.99988 * 6.68645 * 10 8 7 12 12 C 1.46502 * 119.99861 * 186.68314 * 10 8 7 13 13 C 1.53499 * 114.20880 * 240.00026 * 12 10 8 14 14 N 1.47071 * 87.98674 * 220.15255 * 13 12 10 15 15 C 1.36932 * 136.05965 * 207.08850 * 14 13 12 16 16 H 1.08001 * 119.99572 * 353.87898 * 15 14 13 17 17 C 1.38811 * 120.00240 * 173.88007 * 15 14 13 18 18 N 1.31621 * 119.99872 * 180.35611 * 17 15 14 19 19 Si 1.86797 * 120.00080 * 0.35960 * 17 15 14 20 20 H 1.48499 * 109.47178 * 174.54715 * 19 17 15 21 21 H 1.48501 * 109.46741 * 294.54336 * 19 17 15 22 22 H 1.48495 * 109.47226 * 54.54001 * 19 17 15 23 23 C 1.47071 * 87.88592 * 27.33802 * 14 13 12 24 24 C 1.40516 * 106.83511 * 180.50444 * 7 6 5 25 25 N 1.30774 * 108.73063 * 0.26210 * 24 7 6 26 26 N 1.36491 * 120.31670 * 0.57678 * 6 5 4 27 27 C 1.35635 * 119.90631 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46739 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47195 * 299.99569 * 1 2 3 30 30 H 1.09001 * 109.47356 * 60.00346 * 1 2 3 31 31 H 1.08002 * 120.30944 * 359.95785 * 4 3 2 32 32 H 1.08003 * 120.32695 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.46937 * 275.63942 * 11 10 8 34 34 H 1.09002 * 109.47109 * 35.63694 * 11 10 8 35 35 H 1.08998 * 109.47006 * 155.64075 * 11 10 8 36 36 H 1.09004 * 113.28378 * 13.06880 * 12 10 8 37 37 H 1.08993 * 113.46762 * 105.36901 * 13 12 10 38 38 H 1.09000 * 113.46372 * 334.92489 * 13 12 10 39 39 H 0.97006 * 119.99985 * 5.04103 * 18 17 15 40 40 H 1.09004 * 113.46509 * 87.44011 * 23 14 13 41 41 H 1.08994 * 113.47003 * 217.88255 * 23 14 13 42 42 H 1.07993 * 125.63553 * 180.22981 * 24 7 6 43 43 H 1.08003 * 119.67434 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2791 2.3890 0.0005 5 6 1.9092 3.5986 0.0011 6 6 3.3093 3.6433 0.0069 7 6 4.2333 4.7078 0.0007 8 6 3.9172 6.1387 0.0012 9 8 2.7663 6.5077 0.1463 10 7 4.9006 7.0462 -0.1591 11 6 6.2601 6.6042 -0.4796 12 6 4.6101 8.4747 -0.0130 13 6 4.8988 9.3075 -1.2696 14 7 5.4356 10.3557 -0.3886 15 6 5.5722 11.7170 -0.4454 16 1 5.3230 12.2472 -1.3527 17 6 6.0310 12.4154 0.6631 18 7 6.1556 13.7246 0.6107 19 14 6.4715 11.4971 2.2290 20 1 7.0554 12.4455 3.2113 21 1 5.2479 10.8814 2.8025 22 1 7.4612 10.4346 1.9180 23 6 5.7669 9.2976 0.5777 24 6 5.5157 4.1336 0.0002 25 7 5.3929 2.8317 -0.0001 26 7 4.0356 2.4876 0.0002 27 6 3.4011 1.2806 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2003 2.3363 0.0003 32 1 1.3343 4.5129 0.0011 33 1 6.7826 6.3404 0.4399 34 1 6.2143 5.7338 -1.1341 35 1 6.7948 7.4097 -0.9830 36 1 3.6391 8.6727 0.4411 37 1 3.9995 9.6099 -1.8060 38 1 5.6500 8.8625 -1.9222 39 1 5.8585 14.2091 -0.1755 40 1 6.7469 8.8499 0.4121 41 1 5.6070 9.5915 1.6150 42 1 6.4487 4.6776 -0.0005 43 1 3.9826 0.3705 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044058640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:30 Heat of formation + Delta-G solvation = 135.708627 kcal Electronic energy + Delta-G solvation = -27663.889445 eV Core-core repulsion = 23715.662097 eV Total energy + Delta-G solvation = -3948.227347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.53031 -40.18379 -39.63954 -37.88690 -36.62240 -34.66658 -33.32627 -32.25232 -30.65557 -29.68099 -28.19990 -27.18535 -27.02521 -25.38450 -24.29750 -23.95457 -22.41352 -21.91803 -19.99029 -19.03846 -18.71446 -17.98563 -17.50924 -16.98545 -16.72646 -16.61638 -16.05514 -15.81054 -15.38389 -15.07202 -14.99963 -14.82350 -14.43049 -13.96166 -13.69522 -13.17958 -13.14969 -13.00375 -12.86698 -12.65595 -12.09300 -11.96406 -11.93727 -11.66202 -11.51466 -11.37133 -11.30432 -11.11567 -10.74027 -10.53260 -10.43518 -9.70389 -9.37041 -9.31067 -9.10489 -8.96550 -8.29173 -7.83035 -7.17885 -6.31499 -3.25573 0.18618 0.67777 1.56550 1.97139 2.79128 2.86064 3.13832 3.41218 3.45220 3.50744 3.66376 3.92070 4.02333 4.15101 4.41594 4.58868 4.60004 4.63312 4.68820 4.77312 4.87803 4.93382 4.98191 5.09727 5.10846 5.14398 5.41240 5.47074 5.50676 5.59878 5.64674 5.73931 5.82936 5.88635 6.09629 6.16189 6.22428 6.31581 6.39400 6.52005 6.64679 6.98033 7.08177 7.15614 7.62805 8.22555 8.40379 8.96275 9.47959 10.32292 11.19981 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.029112 B = 0.002495 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.564040 B =11220.386049 C =11577.807696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.308 6.308 3 C 0.091 3.909 4 C -0.148 4.148 5 C -0.060 4.060 6 C 0.137 3.863 7 C -0.294 4.294 8 C 0.597 3.403 9 O -0.552 6.552 10 N -0.596 5.596 11 C 0.061 3.939 12 C 0.106 3.894 13 C 0.111 3.889 14 N -0.621 5.621 15 C -0.301 4.301 16 H 0.084 0.916 17 C -0.024 4.024 18 N -0.933 5.933 19 Si 1.074 2.926 20 H -0.295 1.295 21 H -0.291 1.291 22 H -0.289 1.289 23 C 0.088 3.912 24 C 0.094 3.906 25 N -0.312 5.312 26 N -0.242 5.242 27 C 0.056 3.944 28 H 0.106 0.894 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.152 0.848 32 H 0.168 0.832 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.125 0.875 37 H 0.050 0.950 38 H 0.040 0.960 39 H 0.261 0.739 40 H 0.048 0.952 41 H 0.054 0.946 42 H 0.217 0.783 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.470 -30.636 -1.794 31.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.220 6.220 3 C 0.042 3.958 4 C -0.171 4.171 5 C -0.079 4.079 6 C 0.015 3.985 7 C -0.309 4.309 8 C 0.387 3.613 9 O -0.432 6.432 10 N -0.328 5.328 11 C -0.082 4.082 12 C 0.002 3.998 13 C -0.016 4.016 14 N -0.350 5.350 15 C -0.427 4.427 16 H 0.102 0.898 17 C -0.223 4.223 18 N -0.575 5.575 19 Si 0.907 3.093 20 H -0.223 1.223 21 H -0.220 1.220 22 H -0.216 1.216 23 C -0.038 4.038 24 C -0.084 4.084 25 N -0.135 5.135 26 N -0.006 5.006 27 C -0.070 4.070 28 H 0.124 0.876 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.169 0.831 32 H 0.186 0.814 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.102 0.898 36 H 0.143 0.857 37 H 0.069 0.931 38 H 0.058 0.942 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.233 0.767 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -7.565 -31.225 -0.224 32.129 hybrid contribution -1.047 0.604 -1.665 2.058 sum -8.612 -30.621 -1.889 31.865 Atomic orbital electron populations 1.23173 0.77189 1.04608 1.01823 1.86065 1.22066 1.24584 1.89329 1.17867 0.90705 0.85635 1.01563 1.21578 1.01527 0.91323 1.02692 1.20801 0.90759 0.99707 0.96679 1.19277 0.92519 0.86406 1.00308 1.19740 0.91539 0.93291 1.26331 1.16876 0.84678 0.83699 0.76008 1.90749 1.19694 1.81122 1.51604 1.47577 1.08924 1.06563 1.69725 1.22336 0.83810 1.01542 1.00549 1.23549 1.00721 0.76174 0.99381 1.22767 0.96937 0.88259 0.93659 1.45764 1.70578 1.00884 1.17753 1.20137 1.44461 0.77660 1.00477 0.89843 1.25739 0.99177 0.96485 1.00881 1.70924 1.48558 1.05790 1.32263 0.83646 0.76067 0.73582 0.75962 1.22267 1.21986 1.21647 1.23235 0.95765 0.88929 0.95885 1.25124 0.99332 0.90627 0.93312 1.77695 0.88701 1.15781 1.31320 1.45652 1.06545 1.04317 1.44086 1.19966 0.91018 0.87974 1.08081 0.87592 0.92167 0.92187 0.83074 0.81434 0.92012 0.90527 0.89767 0.85689 0.93139 0.94212 0.92892 0.93421 0.92824 0.76689 0.80512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.08 9.81 101.05 0.99 1.08 16 2 O -0.31 -2.06 10.48 -19.78 -0.21 -2.27 16 3 C 0.09 0.73 6.63 -39.65 -0.26 0.46 16 4 C -0.15 -1.12 9.04 -39.39 -0.36 -1.48 16 5 C -0.06 -0.63 9.73 -39.56 -0.38 -1.01 16 6 C 0.14 1.74 6.76 -84.07 -0.57 1.17 16 7 C -0.29 -4.02 5.97 -104.66 -0.62 -4.65 16 8 C 0.60 9.59 7.63 -12.92 -0.10 9.49 16 9 O -0.55 -10.34 15.30 5.16 0.08 -10.26 16 10 N -0.60 -9.19 3.12 -175.14 -0.55 -9.74 16 11 C 0.06 0.69 7.45 59.85 0.45 1.13 16 12 C 0.11 1.98 4.54 -67.67 -0.31 1.68 16 13 C 0.11 2.25 8.23 -8.49 -0.07 2.18 16 14 N -0.62 -15.42 3.68 -184.57 -0.68 -16.10 16 15 C -0.30 -8.74 11.09 -15.06 -0.17 -8.91 16 16 H 0.08 2.55 8.05 -52.49 -0.42 2.12 16 17 C -0.02 -0.72 5.50 -17.43 -0.10 -0.82 16 18 N -0.93 -29.59 13.70 55.49 0.76 -28.83 16 19 Si 1.07 27.06 25.01 -169.99 -4.25 22.81 16 20 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 21 H -0.29 -7.04 6.62 56.52 0.37 -6.67 16 22 H -0.29 -6.69 6.49 56.52 0.37 -6.33 16 23 C 0.09 1.86 5.35 -8.35 -0.04 1.81 16 24 C 0.09 1.09 9.82 -17.14 -0.17 0.92 16 25 N -0.31 -3.87 12.58 30.75 0.39 -3.49 16 26 N -0.24 -2.86 3.86 -10.41 -0.04 -2.90 16 27 C 0.06 0.52 11.10 -16.47 -0.18 0.34 16 28 H 0.11 0.14 8.14 -51.93 -0.42 -0.29 16 29 H 0.06 0.14 7.67 -51.93 -0.40 -0.26 16 30 H 0.06 0.13 7.67 -51.93 -0.40 -0.26 16 31 H 0.15 0.67 6.36 -52.49 -0.33 0.34 16 32 H 0.17 1.80 7.14 -52.48 -0.37 1.43 16 33 H 0.06 0.58 7.27 -51.93 -0.38 0.21 16 34 H 0.08 0.71 5.43 -51.93 -0.28 0.43 16 35 H 0.08 1.00 5.96 -51.93 -0.31 0.69 16 36 H 0.13 2.54 7.35 -51.93 -0.38 2.16 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.04 0.74 7.05 -51.93 -0.37 0.37 16 39 H 0.26 8.17 8.73 -40.82 -0.36 7.81 16 40 H 0.05 0.93 6.40 -51.93 -0.33 0.60 16 41 H 0.05 1.20 3.95 -51.93 -0.21 1.00 16 42 H 0.22 1.83 4.46 -52.49 -0.23 1.60 16 43 H 0.18 1.27 8.06 -52.48 -0.42 0.84 16 LS Contribution 344.40 15.07 5.19 5.19 Total: -1.00 -36.84 344.40 -6.10 -42.94 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -4.90 Total: -0.75 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -1.89 Total: 3.40 kcal Atomic # 7 Polarization: -60.94 SS G_CDS: -0.12 Total: -61.06 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: -0.13 Total: -12.53 kcal Atomic # 14 Polarization: 27.06 SS G_CDS: -4.25 Total: 22.81 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -36.84 -6.10 -42.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044058640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.647 kcal (2) G-P(sol) polarization free energy of solvation -36.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds