Wall clock time and date at job start Tue Mar 31 2020 06:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.36014 * 117.00113 * 2 1 4 4 C 1.40516 * 119.89599 * 0.02562 * 3 2 1 5 5 C 1.36388 * 119.38122 * 179.97438 * 4 3 2 6 6 C 1.40085 * 119.34406 * 359.72544 * 5 4 3 7 7 C 1.40963 * 132.78089 * 179.54472 * 6 5 4 8 8 C 1.46537 * 126.58806 * 0.76850 * 7 6 5 9 9 O 1.21728 * 119.99703 * 7.57149 * 8 7 6 10 10 N 1.34777 * 120.00419 * 187.57792 * 8 7 6 11 11 C 1.46498 * 119.99988 * 6.68645 * 10 8 7 12 12 C 1.46502 * 119.99861 * 186.68314 * 10 8 7 13 13 C 1.53499 * 114.20880 * 240.00026 * 12 10 8 14 14 N 1.47071 * 87.98674 * 220.15255 * 13 12 10 15 15 C 1.36932 * 136.05965 * 207.08850 * 14 13 12 16 16 H 1.08001 * 119.99572 * 353.87898 * 15 14 13 17 17 C 1.38811 * 120.00240 * 173.88007 * 15 14 13 18 18 N 1.31621 * 119.99872 * 180.35611 * 17 15 14 19 19 Si 1.86797 * 120.00080 * 0.35960 * 17 15 14 20 20 H 1.48499 * 109.47178 * 174.54715 * 19 17 15 21 21 H 1.48501 * 109.46741 * 294.54336 * 19 17 15 22 22 H 1.48495 * 109.47226 * 54.54001 * 19 17 15 23 23 C 1.47071 * 87.88592 * 27.33802 * 14 13 12 24 24 C 1.40516 * 106.83511 * 180.50444 * 7 6 5 25 25 N 1.30774 * 108.73063 * 0.26210 * 24 7 6 26 26 N 1.36491 * 120.31670 * 0.57678 * 6 5 4 27 27 C 1.35635 * 119.90631 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.46739 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47195 * 299.99569 * 1 2 3 30 30 H 1.09001 * 109.47356 * 60.00346 * 1 2 3 31 31 H 1.08002 * 120.30944 * 359.95785 * 4 3 2 32 32 H 1.08003 * 120.32695 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.46937 * 275.63942 * 11 10 8 34 34 H 1.09002 * 109.47109 * 35.63694 * 11 10 8 35 35 H 1.08998 * 109.47006 * 155.64075 * 11 10 8 36 36 H 1.09004 * 113.28378 * 13.06880 * 12 10 8 37 37 H 1.08993 * 113.46762 * 105.36901 * 13 12 10 38 38 H 1.09000 * 113.46372 * 334.92489 * 13 12 10 39 39 H 0.97006 * 119.99985 * 5.04103 * 18 17 15 40 40 H 1.09004 * 113.46509 * 87.44011 * 23 14 13 41 41 H 1.08994 * 113.47003 * 217.88255 * 23 14 13 42 42 H 1.07993 * 125.63553 * 180.22981 * 24 7 6 43 43 H 1.08003 * 119.67434 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.2791 2.3890 0.0005 5 6 1.9092 3.5986 0.0011 6 6 3.3093 3.6433 0.0069 7 6 4.2333 4.7078 0.0007 8 6 3.9172 6.1387 0.0012 9 8 2.7663 6.5077 0.1463 10 7 4.9006 7.0462 -0.1591 11 6 6.2601 6.6042 -0.4796 12 6 4.6101 8.4747 -0.0130 13 6 4.8988 9.3075 -1.2696 14 7 5.4356 10.3557 -0.3886 15 6 5.5722 11.7170 -0.4454 16 1 5.3230 12.2472 -1.3527 17 6 6.0310 12.4154 0.6631 18 7 6.1556 13.7246 0.6107 19 14 6.4715 11.4971 2.2290 20 1 7.0554 12.4455 3.2113 21 1 5.2479 10.8814 2.8025 22 1 7.4612 10.4346 1.9180 23 6 5.7669 9.2976 0.5777 24 6 5.5157 4.1336 0.0002 25 7 5.3929 2.8317 -0.0001 26 7 4.0356 2.4876 0.0002 27 6 3.4011 1.2806 -0.0005 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 0.2003 2.3363 0.0003 32 1 1.3343 4.5129 0.0011 33 1 6.7826 6.3404 0.4399 34 1 6.2143 5.7338 -1.1341 35 1 6.7948 7.4097 -0.9830 36 1 3.6391 8.6727 0.4411 37 1 3.9995 9.6099 -1.8060 38 1 5.6500 8.8625 -1.9222 39 1 5.8585 14.2091 -0.1755 40 1 6.7469 8.8499 0.4121 41 1 5.6070 9.5915 1.6150 42 1 6.4487 4.6776 -0.0005 43 1 3.9826 0.3705 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044058640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:29 Heat of formation + Delta-G solvation = 108.338216 kcal Electronic energy + Delta-G solvation = -27665.076315 eV Core-core repulsion = 23715.662097 eV Total energy + Delta-G solvation = -3949.414217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.35026 -41.32036 -40.48877 -39.33205 -37.37065 -35.97031 -34.48585 -34.02634 -31.40176 -30.70701 -29.57979 -28.20674 -27.80947 -27.06068 -25.24732 -25.02024 -23.53847 -23.06150 -21.44124 -20.38077 -19.63620 -19.31541 -18.75170 -17.94598 -17.76890 -17.30432 -17.21764 -17.01366 -16.62319 -16.15491 -15.75123 -15.64340 -15.54204 -15.21022 -15.16481 -15.04631 -14.00795 -13.87533 -13.63832 -13.53801 -13.52069 -13.25842 -13.24254 -13.10645 -12.61222 -12.43815 -12.33013 -12.24880 -11.98552 -11.92169 -11.55411 -11.33205 -11.13502 -11.04543 -10.87049 -10.10263 -9.58112 -9.23662 -8.66356 -8.64912 -5.51029 -0.57055 -0.08637 0.83668 1.03297 1.39238 1.49523 1.69244 1.90249 2.00716 2.34509 2.45482 2.53479 2.98748 3.15827 3.23098 3.33252 3.48481 3.56839 3.82872 3.84105 3.91475 4.11522 4.14985 4.24643 4.34458 4.36316 4.43732 4.44210 4.50341 4.56603 4.63542 4.72282 4.77925 4.82576 4.90031 4.92497 5.01842 5.07628 5.15101 5.23760 5.57517 5.62423 5.92325 6.08204 6.32323 6.46581 6.67234 7.21707 7.28662 8.21396 8.88550 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.029112 B = 0.002495 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.564040 B =11220.386049 C =11577.807696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.314 6.314 3 C 0.102 3.898 4 C -0.119 4.119 5 C -0.087 4.087 6 C 0.126 3.874 7 C -0.327 4.327 8 C 0.596 3.404 9 O -0.591 6.591 10 N -0.596 5.596 11 C 0.050 3.950 12 C 0.129 3.871 13 C 0.113 3.887 14 N -0.654 5.654 15 C -0.289 4.289 16 H 0.051 0.949 17 C -0.083 4.083 18 N -0.969 5.969 19 Si 1.111 2.889 20 H -0.304 1.304 21 H -0.279 1.279 22 H -0.252 1.252 23 C 0.088 3.912 24 C 0.108 3.892 25 N -0.332 5.332 26 N -0.244 5.244 27 C 0.044 3.956 28 H 0.126 0.874 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.187 0.813 32 H 0.159 0.841 33 H 0.088 0.912 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.041 0.959 38 H 0.067 0.933 39 H 0.246 0.754 40 H 0.079 0.921 41 H 0.046 0.954 42 H 0.244 0.756 43 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.484 -35.005 -1.362 36.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.227 6.227 3 C 0.053 3.947 4 C -0.143 4.143 5 C -0.107 4.107 6 C 0.003 3.997 7 C -0.342 4.342 8 C 0.389 3.611 9 O -0.473 6.473 10 N -0.326 5.326 11 C -0.091 4.091 12 C 0.023 3.977 13 C -0.014 4.014 14 N -0.383 5.383 15 C -0.416 4.416 16 H 0.069 0.931 17 C -0.275 4.275 18 N -0.614 5.614 19 Si 0.937 3.063 20 H -0.232 1.232 21 H -0.207 1.207 22 H -0.177 1.177 23 C -0.038 4.038 24 C -0.070 4.070 25 N -0.155 5.155 26 N -0.007 5.007 27 C -0.083 4.083 28 H 0.144 0.856 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.204 0.796 32 H 0.176 0.824 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.101 0.899 36 H 0.123 0.877 37 H 0.059 0.941 38 H 0.085 0.915 39 H 0.056 0.944 40 H 0.096 0.904 41 H 0.064 0.936 42 H 0.259 0.741 43 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -7.569 -35.686 0.166 36.480 hybrid contribution -1.261 1.691 -1.923 2.854 sum -8.830 -33.995 -1.757 35.167 Atomic orbital electron populations 1.23543 0.75098 1.06457 1.02966 1.86096 1.24161 1.23609 1.88792 1.17945 0.90476 0.86338 0.99959 1.21941 1.03218 0.90037 0.99097 1.20806 0.90129 1.00568 0.99168 1.19539 0.93411 0.86645 1.00065 1.19511 0.92913 0.91974 1.29837 1.17191 0.84095 0.84683 0.75142 1.90720 1.21284 1.81824 1.53475 1.47496 1.10628 1.04749 1.69763 1.22672 0.81595 1.02369 1.02465 1.22838 0.98962 0.78326 0.97577 1.22940 0.97005 0.87169 0.94242 1.45762 1.71708 1.00434 1.20390 1.19977 1.42430 0.80157 0.99036 0.93082 1.27089 0.99781 0.96502 1.04149 1.71027 1.51242 1.07115 1.31993 0.83239 0.77207 0.73459 0.72349 1.23218 1.20670 1.17679 1.23428 0.97841 0.87823 0.94659 1.25481 0.99505 0.90299 0.91705 1.77646 0.89199 1.16170 1.32465 1.45776 1.06437 1.04752 1.43732 1.20453 0.91974 0.87825 1.08047 0.85622 0.91017 0.90976 0.79634 0.82359 0.89334 0.88208 0.89863 0.87743 0.94055 0.91506 0.94447 0.90371 0.93614 0.74091 0.78739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.03 9.81 113.37 1.11 1.14 16 2 O -0.31 -3.14 10.48 -93.71 -0.98 -4.12 16 3 C 0.10 1.33 6.63 22.22 0.15 1.48 16 4 C -0.12 -1.50 9.04 22.39 0.20 -1.29 16 5 C -0.09 -1.74 9.73 22.29 0.22 -1.52 16 6 C 0.13 3.08 6.76 39.53 0.27 3.35 16 7 C -0.33 -8.57 5.97 -19.89 -0.12 -8.69 16 8 C 0.60 18.73 7.63 86.41 0.66 19.39 16 9 O -0.59 -22.43 15.30 -4.44 -0.07 -22.50 16 10 N -0.60 -17.27 3.12 -826.21 -2.57 -19.84 16 11 C 0.05 0.97 7.45 127.77 0.95 1.92 16 12 C 0.13 4.68 4.54 45.55 0.21 4.89 16 13 C 0.11 4.47 8.23 83.19 0.68 5.16 16 14 N -0.65 -32.17 3.68 -737.86 -2.72 -34.89 16 15 C -0.29 -17.13 11.09 84.03 0.93 -16.20 16 16 H 0.05 3.27 8.05 -2.91 -0.02 3.25 16 17 C -0.08 -5.08 5.50 84.86 0.47 -4.61 16 18 N -0.97 -63.48 13.70 21.65 0.30 -63.19 16 19 Si 1.11 54.16 25.01 68.60 1.72 55.88 16 20 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 21 H -0.28 -12.92 6.62 99.48 0.66 -12.26 16 22 H -0.25 -10.64 6.49 99.48 0.65 -10.00 16 23 C 0.09 3.51 5.35 83.28 0.45 3.96 16 24 C 0.11 2.25 9.82 85.41 0.84 3.09 16 25 N -0.33 -7.59 12.58 -56.63 -0.71 -8.30 16 26 N -0.24 -5.36 3.86 -186.84 -0.72 -6.08 16 27 C 0.04 0.71 11.10 83.39 0.93 1.64 16 28 H 0.13 -0.16 8.14 -2.38 -0.02 -0.17 16 29 H 0.07 0.04 7.67 -2.39 -0.02 0.02 16 30 H 0.07 0.03 7.67 -2.39 -0.02 0.01 16 31 H 0.19 0.92 6.36 -2.91 -0.02 0.91 16 32 H 0.16 3.44 7.14 -2.91 -0.02 3.41 16 33 H 0.09 1.27 7.27 -2.39 -0.02 1.26 16 34 H 0.10 1.49 5.43 -2.39 -0.01 1.48 16 35 H 0.08 1.66 5.96 -2.39 -0.01 1.64 16 36 H 0.10 4.28 7.35 -2.38 -0.02 4.26 16 37 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.07 2.33 7.05 -2.39 -0.02 2.31 16 39 H 0.25 16.22 8.73 -92.70 -0.81 15.41 16 40 H 0.08 2.71 6.40 -2.38 -0.02 2.70 16 41 H 0.05 1.94 3.95 -2.39 -0.01 1.93 16 42 H 0.24 3.26 4.46 -2.91 -0.01 3.24 16 43 H 0.20 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -83.51 344.40 3.10 -80.41 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: 0.92 Total: 8.92 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: 7.94 Total: 13.71 kcal Atomic # 7 Polarization: -125.87 SS G_CDS: -6.43 Total: -132.30 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -1.05 Total: -26.62 kcal Atomic # 14 Polarization: 54.16 SS G_CDS: 1.72 Total: 55.88 kcal Total: -83.51 3.10 -80.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044058640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.752 kcal (2) G-P(sol) polarization free energy of solvation -83.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds