Wall clock time and date at job start Tue Mar 31 2020 06:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34775 * 119.99875 * 2 1 4 4 O 1.21747 * 119.99885 * 183.43512 * 3 2 1 5 5 C 1.46298 * 120.00206 * 3.15400 * 3 2 1 6 6 C 1.37853 * 125.96730 * 173.49714 * 5 3 2 7 7 C 1.39774 * 106.77811 * 180.02562 * 6 5 3 8 8 C 1.36603 * 107.12283 * 359.97438 * 7 6 5 9 9 C 1.47684 * 125.65130 * 179.97438 * 8 7 6 10 10 C 1.41162 * 126.37577 * 0.02562 * 9 8 7 11 11 N 1.30539 * 108.10276 * 179.97438 * 10 9 8 12 12 N 1.39954 * 108.85408 * 0.02562 * 11 10 9 13 13 C 1.46507 * 125.80263 * 180.02562 * 12 11 10 14 14 C 1.34658 * 108.39255 * 359.75001 * 12 11 10 15 15 O 1.34325 * 108.69564 * 359.73627 * 8 7 6 16 16 C 1.46498 * 119.99639 * 179.97438 * 2 1 3 17 17 C 1.53949 * 113.74362 * 38.74370 * 16 2 1 18 18 N 1.47819 * 86.03218 * 222.08049 * 17 16 2 19 19 C 1.36936 * 134.45126 * 204.63681 * 18 17 16 20 20 H 1.08000 * 119.99320 * 174.51681 * 19 18 17 21 21 C 1.38806 * 120.00190 * 354.52442 * 19 18 17 22 22 N 1.31611 * 120.00103 * 5.00507 * 21 19 18 23 23 Si 1.86804 * 119.99645 * 185.01256 * 21 19 18 24 24 H 1.48505 * 109.47108 * 94.99664 * 23 21 19 25 25 H 1.48499 * 109.46985 * 214.99114 * 23 21 19 26 26 H 1.48500 * 109.47401 * 334.99242 * 23 21 19 27 27 C 1.47586 * 91.05299 * 24.54826 * 18 17 16 28 28 H 1.09005 * 109.47098 * 84.01131 * 1 2 3 29 29 H 1.08997 * 109.47065 * 204.00949 * 1 2 3 30 30 H 1.09002 * 109.46694 * 324.01327 * 1 2 3 31 31 H 1.07997 * 126.61383 * 359.97438 * 6 5 3 32 32 H 1.07994 * 126.43784 * 179.97438 * 7 6 5 33 33 H 1.08000 * 125.94747 * 359.94837 * 10 9 8 34 34 H 1.09002 * 109.46830 * 89.97645 * 13 12 11 35 35 H 1.09000 * 109.46866 * 209.97589 * 13 12 11 36 36 H 1.09005 * 109.46810 * 329.97543 * 13 12 11 37 37 H 1.08004 * 126.29711 * 180.28154 * 14 12 11 38 38 H 1.09005 * 112.94212 * 170.33221 * 16 2 1 39 39 H 1.09000 * 113.76577 * 336.34451 * 17 16 2 40 40 H 1.08999 * 113.76803 * 107.74369 * 17 16 2 41 41 H 0.97008 * 120.00239 * 180.02562 * 22 21 19 42 42 H 1.08993 * 113.76575 * 221.14870 * 27 18 17 43 43 H 1.08999 * 113.76436 * 89.74815 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3547 1.1681 -0.0632 5 6 1.4091 2.4332 0.0697 6 6 1.9705 3.6851 0.2040 7 6 0.9145 4.6004 0.2281 8 6 -0.2420 3.8834 0.1084 9 6 -1.6066 4.4479 0.0876 10 6 -1.9491 5.8138 0.1863 11 7 -3.2496 5.9110 0.1285 12 7 -3.7934 4.6287 -0.0076 13 6 -5.2196 4.3087 -0.1076 14 6 -2.7826 3.7394 -0.0371 15 8 0.0677 2.5803 0.0076 16 6 2.1975 -1.2688 0.0006 17 6 1.5555 -2.3555 -0.8809 18 7 1.8611 -3.2878 0.2248 19 6 2.0638 -4.6394 0.3111 20 1 2.3655 -5.0812 1.2493 21 6 1.8816 -5.4414 -0.8070 22 7 1.6106 -4.8937 -1.9727 23 14 2.0209 -7.2982 -0.6573 24 1 0.6700 -7.8814 -0.4571 25 1 2.6199 -7.8513 -1.8984 26 1 2.8836 -7.6379 0.5027 27 6 1.8621 -2.1775 1.1970 28 1 -0.3633 0.1072 -1.0221 29 1 -0.3633 -0.9387 0.4181 30 1 -0.3633 0.8316 0.6039 31 1 3.0234 3.9143 0.2773 32 1 0.9973 5.6730 0.3234 33 1 -1.2559 6.6353 0.2917 34 1 -5.5210 4.3161 -1.1551 35 1 -5.4009 3.3208 0.3157 36 1 -5.7980 5.0513 0.4422 37 1 -2.8762 2.6682 -0.1381 38 1 3.2669 -1.1421 -0.1681 39 1 0.4887 -2.2099 -1.0506 40 1 2.1091 -2.5619 -1.7969 41 1 1.4829 -5.4542 -2.7541 42 1 2.6599 -2.2423 1.9368 43 1 0.8855 -1.9796 1.6388 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044157440.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:53 Heat of formation + Delta-G solvation = 111.029108 kcal Electronic energy + Delta-G solvation = -27320.207635 eV Core-core repulsion = 23370.910103 eV Total energy + Delta-G solvation = -3949.297532 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.58607 -42.06321 -41.05533 -39.20870 -36.07971 -34.66744 -34.04759 -33.80924 -32.38098 -30.21616 -29.36828 -28.03107 -27.58751 -26.64955 -25.51575 -23.85961 -23.18577 -21.90269 -21.39582 -21.11664 -20.33423 -18.87786 -18.74883 -18.21613 -17.58634 -17.53669 -16.91390 -16.43886 -16.35514 -15.99517 -15.74281 -15.42776 -15.26445 -14.65058 -14.31046 -14.19714 -14.05220 -13.90406 -13.72073 -13.62335 -13.56302 -13.33092 -13.21799 -13.13075 -12.82233 -12.79887 -12.57052 -12.10932 -11.97641 -11.91839 -11.57014 -11.29380 -11.06703 -10.88670 -10.61900 -10.49777 -9.67798 -8.97181 -8.68447 -7.94523 -5.28508 -0.16815 0.75571 1.19707 1.37493 1.46424 1.48128 1.57429 1.63014 2.02261 2.10893 2.18518 2.48338 3.22535 3.35517 3.40443 3.56758 3.79554 3.88052 3.97767 4.07813 4.18144 4.24374 4.31569 4.40300 4.44467 4.53443 4.58268 4.63731 4.68710 4.72613 4.73188 4.82806 4.85036 5.00748 5.04778 5.17993 5.18460 5.42676 5.45293 5.52260 5.61117 5.85629 5.87263 5.96760 6.33020 6.57310 6.87350 6.96146 7.55859 8.49259 9.23064 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.017194 B = 0.002506 C = 0.002244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.081556 B =11170.363742 C =12474.377782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.591 5.591 3 C 0.596 3.404 4 O -0.567 6.567 5 C -0.111 4.111 6 C -0.104 4.104 7 C -0.217 4.217 8 C 0.113 3.887 9 C -0.212 4.212 10 C 0.089 3.911 11 N -0.326 5.326 12 N -0.366 5.366 13 C 0.087 3.913 14 C 0.097 3.903 15 O -0.155 6.155 16 C 0.113 3.887 17 C 0.164 3.836 18 N -0.635 5.635 19 C -0.236 4.236 20 H 0.087 0.913 21 C -0.064 4.064 22 N -0.951 5.951 23 Si 0.982 3.018 24 H -0.284 1.284 25 H -0.295 1.295 26 H -0.267 1.267 27 C 0.116 3.884 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.165 0.835 32 H 0.186 0.814 33 H 0.216 0.784 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.097 0.903 37 H 0.208 0.792 38 H 0.099 0.901 39 H 0.040 0.960 40 H 0.038 0.962 41 H 0.250 0.750 42 H 0.055 0.945 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.000 23.340 5.077 27.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.321 5.321 3 C 0.386 3.614 4 O -0.449 6.449 5 C -0.162 4.162 6 C -0.125 4.125 7 C -0.236 4.236 8 C 0.059 3.941 9 C -0.224 4.224 10 C -0.098 4.098 11 N -0.146 5.146 12 N -0.144 5.144 13 C -0.052 4.052 14 C -0.054 4.054 15 O -0.052 6.052 16 C 0.008 3.992 17 C 0.038 3.962 18 N -0.363 5.363 19 C -0.364 4.364 20 H 0.105 0.895 21 C -0.258 4.258 22 N -0.600 5.600 23 Si 0.809 3.191 24 H -0.211 1.211 25 H -0.222 1.222 26 H -0.192 1.192 27 C -0.009 4.009 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.115 0.885 31 H 0.182 0.818 32 H 0.204 0.796 33 H 0.233 0.767 34 H 0.109 0.891 35 H 0.134 0.866 36 H 0.116 0.884 37 H 0.225 0.775 38 H 0.117 0.883 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.073 0.927 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -14.792 23.500 4.919 28.200 hybrid contribution 0.937 -1.760 -0.339 2.023 sum -13.854 21.740 4.580 26.183 Atomic orbital electron populations 1.22102 0.77272 1.03939 1.03112 1.47888 1.08485 1.04865 1.70905 1.16947 0.86002 0.82041 0.76400 1.90834 1.13787 1.86790 1.53538 1.21822 0.80570 0.95466 1.18372 1.22284 1.01704 0.89995 0.98492 1.21846 0.89308 1.02008 1.10446 1.20214 0.93578 0.80519 0.99752 1.18113 0.88161 0.93618 1.22506 1.24320 0.92599 0.96000 0.96843 1.77216 1.10419 1.01370 1.25612 1.48732 1.08348 1.03757 1.53598 1.22352 0.73495 1.04410 1.04953 1.23525 0.86779 0.98206 0.96886 1.84266 1.23065 1.26871 1.70974 1.23482 0.97082 0.80405 0.98224 1.22489 0.96862 0.84395 0.92439 1.45988 1.82448 1.02512 1.05307 1.19389 1.39005 0.81312 0.96738 0.89486 1.25683 1.02128 1.02695 0.95256 1.70014 1.55451 1.35177 0.99319 0.85017 0.77652 0.79401 0.76993 1.21110 1.22163 1.19152 1.23073 0.99427 0.85299 0.93145 0.91636 0.90294 0.88461 0.81752 0.79644 0.76746 0.89106 0.86555 0.88423 0.77490 0.88286 0.94264 0.94392 0.94071 0.92666 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.05 8.32 127.77 1.06 3.12 16 2 N -0.59 -20.27 3.09 -833.42 -2.58 -22.84 16 3 C 0.60 20.91 7.63 86.34 0.66 21.56 16 4 O -0.57 -23.64 16.35 -4.50 -0.07 -23.72 16 5 C -0.11 -3.12 6.79 24.28 0.16 -2.96 16 6 C -0.10 -2.47 10.66 22.55 0.24 -2.23 16 7 C -0.22 -3.94 10.56 22.26 0.24 -3.70 16 8 C 0.11 2.22 7.16 24.38 0.17 2.39 16 9 C -0.21 -3.46 6.12 -20.15 -0.12 -3.59 16 10 C 0.09 1.28 11.76 85.60 1.01 2.29 16 11 N -0.33 -5.52 12.51 -56.31 -0.70 -6.22 16 12 N -0.37 -4.75 3.99 -367.59 -1.47 -6.22 16 13 C 0.09 0.40 11.45 127.77 1.46 1.87 16 14 C 0.10 1.28 11.51 84.17 0.97 2.25 16 15 O -0.16 -3.64 7.30 -10.55 -0.08 -3.72 16 16 C 0.11 4.63 4.41 46.75 0.21 4.84 16 17 C 0.16 7.93 6.87 86.44 0.59 8.53 16 18 N -0.64 -33.01 3.70 -716.68 -2.65 -35.66 16 19 C -0.24 -13.32 10.70 84.03 0.90 -12.42 16 20 H 0.09 4.68 7.83 -2.91 -0.02 4.65 16 21 C -0.06 -3.66 5.50 84.86 0.47 -3.20 16 22 N -0.95 -57.43 11.48 21.65 0.25 -57.18 16 23 Si 0.98 45.59 29.56 68.60 2.03 47.61 16 24 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 26 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 27 C 0.12 4.81 8.43 86.48 0.73 5.54 16 28 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 29 H 0.08 2.16 6.13 -2.39 -0.01 2.15 16 30 H 0.10 2.17 5.41 -2.39 -0.01 2.16 16 31 H 0.16 3.64 8.06 -2.91 -0.02 3.61 16 32 H 0.19 2.03 8.06 -2.91 -0.02 2.01 16 33 H 0.22 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 35 H 0.12 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.10 0.38 8.14 -2.38 -0.02 0.36 16 37 H 0.21 1.64 8.06 -2.91 -0.02 1.62 16 38 H 0.10 4.48 7.20 -2.38 -0.02 4.46 16 39 H 0.04 1.84 6.69 -2.39 -0.02 1.82 16 40 H 0.04 2.10 7.31 -2.39 -0.02 2.08 16 41 H 0.25 14.64 8.31 -92.70 -0.77 13.86 16 42 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.06 2.23 6.93 -2.39 -0.02 2.21 16 Total: -1.00 -77.76 365.93 4.51 -73.25 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 1.04 Total: 10.40 kcal Atomic # 6 Polarization: 15.55 SS G_CDS: 8.75 Total: 24.30 kcal Atomic # 7 Polarization: -120.97 SS G_CDS: -7.15 Total: -128.12 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.15 Total: -27.43 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -77.76 4.51 -73.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044157440.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.279 kcal (2) G-P(sol) polarization free energy of solvation -77.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds