Wall clock time and date at job start Tue Mar 31 2020 06:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34773 * 120.00145 * 2 1 4 4 O 1.21576 * 120.00272 * 184.85368 * 3 2 1 5 5 C 1.47668 * 119.99996 * 4.86273 * 3 2 1 6 6 C 1.40064 * 119.91934 * 140.34852 * 5 3 2 7 7 C 1.36517 * 120.44062 * 180.02562 * 6 5 3 8 8 C 1.38961 * 120.16236 * 359.97438 * 7 6 5 9 9 C 1.40655 * 120.16214 * 0.02562 * 8 7 6 10 10 C 1.39213 * 119.91291 * 320.34854 * 5 3 2 11 11 N 1.35985 * 107.04879 * 179.97438 * 9 8 7 12 12 C 1.30725 * 109.53673 * 359.97438 * 11 9 8 13 13 O 1.35264 * 125.01770 * 179.97438 * 12 11 9 14 14 N 1.36445 * 109.96401 * 0.26923 * 12 11 9 15 15 C 1.46497 * 126.32001 * 179.73362 * 14 12 11 16 16 C 1.46501 * 119.99841 * 180.02562 * 2 1 3 17 17 C 1.53940 * 113.74320 * 38.74157 * 16 2 1 18 18 N 1.47813 * 86.03668 * 222.08092 * 17 16 2 19 19 C 1.36933 * 134.45678 * 204.63988 * 18 17 16 20 20 H 1.08000 * 120.00059 * 179.87148 * 19 18 17 21 21 C 1.38813 * 120.00113 * 359.87051 * 19 18 17 22 22 N 1.31614 * 119.99919 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99839 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47159 * 60.00088 * 23 21 19 25 25 H 1.48504 * 109.47126 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47138 * 300.00143 * 23 21 19 27 27 C 1.47580 * 91.04602 * 24.54985 * 18 17 16 28 28 H 1.09006 * 109.47100 * 86.03755 * 1 2 3 29 29 H 1.08998 * 109.47078 * 206.03439 * 1 2 3 30 30 H 1.09000 * 109.47395 * 326.03859 * 1 2 3 31 31 H 1.08005 * 119.78084 * 359.97438 * 6 5 3 32 32 H 1.08003 * 119.91876 * 179.97438 * 7 6 5 33 33 H 1.07999 * 120.24119 * 0.02562 * 10 5 3 34 34 H 0.96700 * 113.99910 * 90.02897 * 13 12 11 35 35 H 1.09001 * 109.47182 * 90.01731 * 15 14 12 36 36 H 1.08992 * 109.46950 * 210.02216 * 15 14 12 37 37 H 1.09002 * 109.47025 * 330.02085 * 15 14 12 38 38 H 1.09001 * 112.94253 * 170.33279 * 16 2 1 39 39 H 1.09000 * 113.77322 * 336.35002 * 17 16 2 40 40 H 1.09011 * 113.77353 * 107.74598 * 17 16 2 41 41 H 0.97001 * 119.99625 * 179.97438 * 22 21 19 42 42 H 1.08998 * 113.76535 * 221.14809 * 27 18 17 43 43 H 1.09001 * 113.77048 * 89.75411 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3514 1.1691 -0.0891 5 6 1.4045 2.4437 0.1084 6 6 1.9220 3.4830 0.8919 7 6 1.2518 4.6674 1.0001 8 6 0.0477 4.8518 0.3313 9 6 -0.4867 3.8190 -0.4599 10 6 0.1996 2.6112 -0.5685 11 7 -1.6543 4.2804 -0.9824 12 6 -1.8647 5.5030 -0.5702 13 8 -2.9354 6.2603 -0.9015 14 7 -0.8416 5.9047 0.2382 15 6 -0.7119 7.2103 0.8899 16 6 2.1974 -1.2688 -0.0006 17 6 1.5555 -2.3547 -0.8829 18 7 1.8610 -3.2880 0.2218 19 6 2.0638 -4.6396 0.3070 20 1 2.2808 -5.0939 1.2625 21 6 1.9905 -5.4258 -0.8347 22 7 1.7266 -4.8721 -1.9991 23 14 2.2679 -7.2695 -0.7184 24 1 1.2583 -7.8654 0.1930 25 1 2.1365 -7.8758 -2.0677 26 1 3.6298 -7.5327 -0.1884 27 6 1.8620 -2.1786 1.1950 28 1 -0.3633 0.0710 -1.0253 29 1 -0.3633 -0.9234 0.4510 30 1 -0.3634 0.8523 0.5741 31 1 2.8571 3.3462 1.4148 32 1 1.6583 5.4629 1.6069 33 1 -0.2007 1.8104 -1.1726 34 1 -3.6840 6.1691 -0.2962 35 1 -1.1860 7.1755 1.8708 36 1 0.3438 7.4556 1.0050 37 1 -1.1972 7.9712 0.2786 38 1 3.2669 -1.1419 -0.1691 39 1 0.4887 -2.2090 -1.0526 40 1 2.1091 -2.5604 -1.7992 41 1 1.6757 -5.4215 -2.7969 42 1 2.6598 -2.2439 1.9348 43 1 0.8855 -1.9810 1.6370 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044343577.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:00:00 Heat of formation + Delta-G solvation = 88.343041 kcal Electronic energy + Delta-G solvation = -27534.154947 eV Core-core repulsion = 23583.873674 eV Total energy + Delta-G solvation = -3950.281273 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.54409 -40.07359 -38.44313 -37.62390 -36.41691 -34.76149 -34.45511 -32.06219 -30.80187 -29.35043 -27.79789 -27.41360 -26.69670 -24.78973 -24.25209 -23.27250 -22.41932 -21.23078 -20.20364 -18.99840 -18.57527 -17.86705 -17.26440 -16.93343 -16.75162 -16.33442 -15.57811 -15.32039 -15.00381 -14.77192 -14.68720 -14.24543 -13.95462 -13.71283 -13.62193 -13.29031 -12.98808 -12.92139 -12.63855 -12.42909 -12.07736 -11.82144 -11.62141 -11.51108 -11.43500 -11.27195 -10.86866 -10.75200 -10.69052 -10.31801 -10.23368 -10.07517 -9.57848 -9.52530 -8.78835 -8.60545 -8.39996 -8.11537 -6.89750 -5.76801 -3.09822 0.57045 0.89776 1.82770 2.24634 2.89256 3.19616 3.32054 3.41920 3.45661 3.46895 3.65717 4.02911 4.19878 4.46430 4.54936 4.59225 4.66438 4.88184 4.97575 5.03609 5.12373 5.21771 5.30026 5.38960 5.47966 5.52584 5.67578 5.81151 5.93085 5.95055 6.05601 6.11014 6.14572 6.19906 6.25048 6.44401 6.46032 6.60123 6.80064 7.07370 7.21684 7.35709 7.40343 7.53633 7.75942 7.96913 8.42889 9.03891 9.70118 10.57089 11.40320 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.027714 B = 0.002361 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.091997 B =11857.736175 C =12499.131372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.591 5.591 3 C 0.558 3.442 4 O -0.539 6.539 5 C -0.127 4.127 6 C -0.046 4.046 7 C -0.117 4.117 8 C 0.071 3.929 9 C 0.048 3.952 10 C -0.030 4.030 11 N -0.476 5.476 12 C 0.445 3.555 13 O -0.442 6.442 14 N -0.496 5.496 15 C 0.076 3.924 16 C 0.090 3.910 17 C 0.157 3.843 18 N -0.606 5.606 19 C -0.224 4.224 20 H 0.081 0.919 21 C -0.007 4.007 22 N -0.920 5.920 23 Si 0.914 3.086 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.109 3.891 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.141 0.859 32 H 0.128 0.872 33 H 0.149 0.851 34 H 0.409 0.591 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.118 0.882 39 H 0.033 0.967 40 H 0.077 0.923 41 H 0.255 0.745 42 H 0.047 0.953 43 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.352 26.836 7.664 29.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.323 5.323 3 C 0.346 3.654 4 O -0.417 6.417 5 C -0.132 4.132 6 C -0.067 4.067 7 C -0.137 4.137 8 C -0.038 4.038 9 C -0.070 4.070 10 C -0.050 4.050 11 N -0.206 5.206 12 C 0.142 3.858 13 O -0.243 6.243 14 N -0.199 5.199 15 C -0.066 4.066 16 C -0.013 4.013 17 C 0.031 3.969 18 N -0.333 5.333 19 C -0.351 4.351 20 H 0.099 0.901 21 C -0.203 4.203 22 N -0.567 5.567 23 Si 0.744 3.256 24 H -0.212 1.212 25 H -0.215 1.215 26 H -0.210 1.210 27 C -0.018 4.018 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.159 0.841 32 H 0.146 0.854 33 H 0.166 0.834 34 H 0.267 0.733 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.136 0.864 39 H 0.051 0.949 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -7.976 26.368 6.497 28.304 hybrid contribution -0.155 -0.408 0.889 0.990 sum -8.131 25.960 7.386 28.188 Atomic orbital electron populations 1.22137 0.79939 1.03527 1.01688 1.47956 1.06961 1.06065 1.71280 1.18169 0.87031 0.83313 0.76879 1.90777 1.13517 1.87156 1.50243 1.19751 0.95655 0.95778 1.02058 1.20641 0.98922 0.90696 0.96395 1.19546 0.92831 0.98867 1.02506 1.18797 0.94377 0.88201 1.02426 1.18595 0.93518 0.95047 0.99829 1.20859 0.91829 0.94927 0.97335 1.70729 1.17364 1.06566 1.25968 1.20356 0.86314 0.87412 0.91737 1.84806 1.22907 1.63352 1.53234 1.45552 1.19788 1.13489 1.41076 1.22004 1.04583 0.81805 0.98213 1.24093 0.98146 0.79544 0.99546 1.22681 0.96942 0.83396 0.93909 1.45695 1.81996 1.02185 1.03425 1.18936 1.41657 0.80226 0.94298 0.90107 1.24806 1.01916 0.98253 0.95366 1.69803 1.54439 1.34422 0.98020 0.86168 0.78086 0.84651 0.76652 1.21165 1.21530 1.21004 1.22974 0.98094 0.87283 0.93498 0.92083 0.90092 0.91076 0.84078 0.85368 0.83375 0.73298 0.90576 0.89399 0.89111 0.86442 0.94926 0.90435 0.93473 0.93447 0.94631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.95 7.55 59.85 0.45 1.41 16 2 N -0.59 -9.89 3.09 -176.94 -0.55 -10.43 16 3 C 0.56 9.35 7.33 -12.41 -0.09 9.26 16 4 O -0.54 -10.79 16.38 5.30 0.09 -10.71 16 5 C -0.13 -1.71 5.23 -105.00 -0.55 -2.26 16 6 C -0.05 -0.52 9.55 -39.52 -0.38 -0.90 16 7 C -0.12 -1.09 9.96 -39.93 -0.40 -1.49 16 8 C 0.07 0.75 6.87 -83.85 -0.58 0.18 16 9 C 0.05 0.61 7.21 -84.70 -0.61 0.00 16 10 C -0.03 -0.38 7.60 -38.81 -0.29 -0.67 16 11 N -0.48 -6.15 11.31 -12.26 -0.14 -6.29 16 12 C 0.44 4.39 8.98 -88.89 -0.80 3.59 16 13 O -0.44 -2.96 13.51 -17.49 -0.24 -3.19 16 14 N -0.50 -4.19 3.22 -123.31 -0.40 -4.58 16 15 C 0.08 0.29 11.10 59.85 0.66 0.95 16 16 C 0.09 1.81 4.41 -70.16 -0.31 1.51 16 17 C 0.16 3.71 6.94 -2.84 -0.02 3.69 16 18 N -0.61 -15.68 3.70 -177.90 -0.66 -16.34 16 19 C -0.22 -6.31 10.70 -15.06 -0.16 -6.47 16 20 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 21 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 22 N -0.92 -27.41 11.39 55.49 0.63 -26.78 16 23 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 C 0.11 2.27 8.44 -2.97 -0.03 2.24 16 28 H 0.06 0.78 6.92 -51.93 -0.36 0.42 16 29 H 0.08 1.16 6.20 -51.93 -0.32 0.84 16 30 H 0.07 0.83 5.79 -51.93 -0.30 0.53 16 31 H 0.14 1.47 8.05 -52.48 -0.42 1.05 16 32 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 33 H 0.15 1.83 5.34 -52.49 -0.28 1.55 16 34 H 0.41 0.51 9.06 45.56 0.41 0.92 16 35 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 36 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.09 0.24 8.12 -51.93 -0.42 -0.18 16 38 H 0.12 2.57 7.20 -51.93 -0.37 2.19 16 39 H 0.03 0.76 6.74 -51.93 -0.35 0.41 16 40 H 0.08 2.06 7.17 -51.92 -0.37 1.69 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.04 0.70 6.90 -51.93 -0.36 0.34 16 LS Contribution 356.97 15.07 5.38 5.38 Total: -1.00 -36.92 356.97 -8.48 -45.39 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -4.38 Total: -0.41 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: -3.19 Total: 10.74 kcal Atomic # 7 Polarization: -63.31 SS G_CDS: -1.11 Total: -64.42 kcal Atomic # 8 Polarization: -13.75 SS G_CDS: -0.15 Total: -13.90 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -36.92 -8.48 -45.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044343577.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.737 kcal (2) G-P(sol) polarization free energy of solvation -36.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.394 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds