Wall clock time and date at job start Tue Mar 31 2020 05:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34773 * 120.00145 * 2 1 4 4 O 1.21576 * 120.00272 * 184.85368 * 3 2 1 5 5 C 1.47668 * 119.99996 * 4.86273 * 3 2 1 6 6 C 1.40064 * 119.91934 * 140.34852 * 5 3 2 7 7 C 1.36517 * 120.44062 * 180.02562 * 6 5 3 8 8 C 1.38961 * 120.16236 * 359.97438 * 7 6 5 9 9 C 1.40655 * 120.16214 * 0.02562 * 8 7 6 10 10 C 1.39213 * 119.91291 * 320.34854 * 5 3 2 11 11 N 1.35985 * 107.04879 * 179.97438 * 9 8 7 12 12 C 1.30725 * 109.53673 * 359.97438 * 11 9 8 13 13 O 1.35264 * 125.01770 * 179.97438 * 12 11 9 14 14 N 1.36445 * 109.96401 * 0.26923 * 12 11 9 15 15 C 1.46497 * 126.32001 * 179.73362 * 14 12 11 16 16 C 1.46501 * 119.99841 * 180.02562 * 2 1 3 17 17 C 1.53940 * 113.74320 * 38.74157 * 16 2 1 18 18 N 1.47813 * 86.03668 * 222.08092 * 17 16 2 19 19 C 1.36933 * 134.45678 * 204.63988 * 18 17 16 20 20 H 1.08000 * 120.00059 * 179.87148 * 19 18 17 21 21 C 1.38813 * 120.00113 * 359.87051 * 19 18 17 22 22 N 1.31614 * 119.99919 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99839 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47159 * 60.00088 * 23 21 19 25 25 H 1.48504 * 109.47126 * 180.02562 * 23 21 19 26 26 H 1.48494 * 109.47138 * 300.00143 * 23 21 19 27 27 C 1.47580 * 91.04602 * 24.54985 * 18 17 16 28 28 H 1.09006 * 109.47100 * 86.03755 * 1 2 3 29 29 H 1.08998 * 109.47078 * 206.03439 * 1 2 3 30 30 H 1.09000 * 109.47395 * 326.03859 * 1 2 3 31 31 H 1.08005 * 119.78084 * 359.97438 * 6 5 3 32 32 H 1.08003 * 119.91876 * 179.97438 * 7 6 5 33 33 H 1.07999 * 120.24119 * 0.02562 * 10 5 3 34 34 H 0.96700 * 113.99910 * 90.02897 * 13 12 11 35 35 H 1.09001 * 109.47182 * 90.01731 * 15 14 12 36 36 H 1.08992 * 109.46950 * 210.02216 * 15 14 12 37 37 H 1.09002 * 109.47025 * 330.02085 * 15 14 12 38 38 H 1.09001 * 112.94253 * 170.33279 * 16 2 1 39 39 H 1.09000 * 113.77322 * 336.35002 * 17 16 2 40 40 H 1.09011 * 113.77353 * 107.74598 * 17 16 2 41 41 H 0.97001 * 119.99625 * 179.97438 * 22 21 19 42 42 H 1.08998 * 113.76535 * 221.14809 * 27 18 17 43 43 H 1.09001 * 113.77048 * 89.75411 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3514 1.1691 -0.0891 5 6 1.4045 2.4437 0.1084 6 6 1.9220 3.4830 0.8919 7 6 1.2518 4.6674 1.0001 8 6 0.0477 4.8518 0.3313 9 6 -0.4867 3.8190 -0.4599 10 6 0.1996 2.6112 -0.5685 11 7 -1.6543 4.2804 -0.9824 12 6 -1.8647 5.5030 -0.5702 13 8 -2.9354 6.2603 -0.9015 14 7 -0.8416 5.9047 0.2382 15 6 -0.7119 7.2103 0.8899 16 6 2.1974 -1.2688 -0.0006 17 6 1.5555 -2.3547 -0.8829 18 7 1.8610 -3.2880 0.2218 19 6 2.0638 -4.6396 0.3070 20 1 2.2808 -5.0939 1.2625 21 6 1.9905 -5.4258 -0.8347 22 7 1.7266 -4.8721 -1.9991 23 14 2.2679 -7.2695 -0.7184 24 1 1.2583 -7.8654 0.1930 25 1 2.1365 -7.8758 -2.0677 26 1 3.6298 -7.5327 -0.1884 27 6 1.8620 -2.1786 1.1950 28 1 -0.3633 0.0710 -1.0253 29 1 -0.3633 -0.9234 0.4510 30 1 -0.3634 0.8523 0.5741 31 1 2.8571 3.3462 1.4148 32 1 1.6583 5.4629 1.6069 33 1 -0.2007 1.8104 -1.1726 34 1 -3.6840 6.1691 -0.2962 35 1 -1.1860 7.1755 1.8708 36 1 0.3438 7.4556 1.0050 37 1 -1.1972 7.9712 0.2786 38 1 3.2669 -1.1419 -0.1691 39 1 0.4887 -2.2090 -1.0526 40 1 2.1091 -2.5604 -1.7992 41 1 1.6757 -5.4215 -2.7969 42 1 2.6598 -2.2439 1.9348 43 1 0.8855 -1.9810 1.6370 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044343577.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:59 Heat of formation + Delta-G solvation = 59.596185 kcal Electronic energy + Delta-G solvation = -27535.401504 eV Core-core repulsion = 23583.873674 eV Total energy + Delta-G solvation = -3951.527830 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.29790 -41.42008 -39.58656 -38.81848 -37.30170 -36.02318 -35.34346 -34.04680 -31.78664 -30.23310 -29.50260 -28.14364 -27.91906 -26.61813 -25.64701 -24.26806 -23.66219 -21.96370 -21.57258 -20.15341 -19.59191 -18.93535 -18.71239 -18.01980 -17.88254 -17.46993 -16.98125 -16.56733 -16.42187 -15.85817 -15.62990 -15.44565 -15.24964 -14.94580 -14.55804 -14.14409 -13.97498 -13.94215 -13.58212 -13.49496 -13.43056 -13.26748 -13.17151 -12.97629 -12.79534 -12.56394 -12.48704 -12.32242 -12.07032 -11.98606 -11.53960 -11.44994 -11.15056 -10.90356 -10.86088 -9.64277 -9.38778 -9.20940 -8.96116 -7.91852 -5.26554 -0.24966 0.01316 1.21269 1.46234 1.50126 1.50460 1.56447 1.70448 1.92316 2.49130 2.60950 2.73070 3.24971 3.28992 3.40623 3.53966 3.79123 3.82343 3.90803 4.16621 4.18270 4.23101 4.33103 4.38873 4.43228 4.47742 4.52964 4.64854 4.71081 4.72190 4.84481 4.90838 4.96848 5.17956 5.20266 5.21996 5.28189 5.33078 5.46918 5.59574 5.68768 5.70488 5.88997 6.39613 6.57524 6.64303 6.88810 7.08441 7.57840 8.51182 9.25102 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.027714 B = 0.002361 C = 0.002240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.091997 B =11857.736175 C =12499.131372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.592 5.592 3 C 0.559 3.441 4 O -0.578 6.578 5 C -0.137 4.137 6 C -0.056 4.056 7 C -0.095 4.095 8 C 0.070 3.930 9 C 0.027 3.973 10 C -0.036 4.036 11 N -0.523 5.523 12 C 0.456 3.544 13 O -0.441 6.441 14 N -0.488 5.488 15 C 0.067 3.933 16 C 0.114 3.886 17 C 0.160 3.840 18 N -0.636 5.636 19 C -0.236 4.236 20 H 0.088 0.912 21 C -0.067 4.067 22 N -0.954 5.954 23 Si 0.983 3.017 24 H -0.274 1.274 25 H -0.294 1.294 26 H -0.276 1.276 27 C 0.117 3.883 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.147 0.853 32 H 0.168 0.832 33 H 0.143 0.857 34 H 0.433 0.567 35 H 0.098 0.902 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.097 0.903 39 H 0.038 0.962 40 H 0.039 0.961 41 H 0.250 0.750 42 H 0.055 0.945 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.429 29.453 9.669 32.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.322 5.322 3 C 0.350 3.650 4 O -0.459 6.459 5 C -0.143 4.143 6 C -0.077 4.077 7 C -0.115 4.115 8 C -0.041 4.041 9 C -0.091 4.091 10 C -0.056 4.056 11 N -0.254 5.254 12 C 0.152 3.848 13 O -0.246 6.246 14 N -0.190 5.190 15 C -0.073 4.073 16 C 0.010 3.990 17 C 0.034 3.966 18 N -0.364 5.364 19 C -0.364 4.364 20 H 0.106 0.894 21 C -0.260 4.260 22 N -0.602 5.602 23 Si 0.811 3.189 24 H -0.200 1.200 25 H -0.221 1.221 26 H -0.202 1.202 27 C -0.009 4.009 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.165 0.835 32 H 0.185 0.815 33 H 0.161 0.839 34 H 0.296 0.704 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.115 0.885 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.059 0.941 42 H 0.074 0.926 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.106 29.054 8.559 31.628 hybrid contribution 0.058 -0.984 0.278 1.024 sum -9.048 28.070 8.837 30.788 Atomic orbital electron populations 1.22280 0.77851 1.04245 1.02643 1.47887 1.08092 1.04959 1.71291 1.18670 0.86688 0.84156 0.75520 1.90747 1.15350 1.87786 1.52021 1.19449 0.96046 0.94668 1.04119 1.20750 0.99484 0.90894 0.96545 1.19820 0.91616 0.98754 1.01337 1.18974 0.94824 0.88391 1.01889 1.18713 0.93993 0.95608 1.00773 1.20732 0.91820 0.95428 0.97592 1.70659 1.18193 1.08608 1.27960 1.20444 0.86985 0.86807 0.90544 1.84777 1.23105 1.62466 1.54264 1.45782 1.18547 1.14363 1.40295 1.22410 1.06130 0.79654 0.99154 1.23376 0.97006 0.80689 0.97967 1.22539 0.96792 0.84653 0.92640 1.46013 1.82337 1.02463 1.05538 1.19362 1.40767 0.81665 0.94626 0.89448 1.25692 1.02406 1.02814 0.95082 1.70005 1.56022 1.35701 0.98488 0.85087 0.78320 0.79165 0.76350 1.19996 1.22062 1.20220 1.23067 0.99391 0.85272 0.93161 0.91390 0.90645 0.88639 0.83487 0.81487 0.83918 0.70386 0.88355 0.87950 0.87807 0.88460 0.94451 0.94279 0.94138 0.92647 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.93 7.55 127.77 0.96 2.90 16 2 N -0.59 -20.06 3.09 -831.98 -2.57 -22.64 16 3 C 0.56 19.02 7.33 86.73 0.64 19.66 16 4 O -0.58 -23.83 16.38 -3.96 -0.06 -23.90 16 5 C -0.14 -3.64 5.23 -20.11 -0.11 -3.75 16 6 C -0.06 -1.17 9.55 22.31 0.21 -0.96 16 7 C -0.09 -1.47 9.96 22.04 0.22 -1.25 16 8 C 0.07 1.30 6.87 38.91 0.27 1.56 16 9 C 0.03 0.65 7.21 39.36 0.28 0.93 16 10 C -0.04 -0.91 7.60 22.77 0.17 -0.73 16 11 N -0.52 -12.97 11.31 -306.54 -3.47 -16.44 16 12 C 0.46 7.94 8.98 179.74 1.61 9.55 16 13 O -0.44 -4.68 13.51 -85.48 -1.16 -5.83 16 14 N -0.49 -6.64 3.22 -654.91 -2.11 -8.75 16 15 C 0.07 0.21 11.10 127.77 1.42 1.63 16 16 C 0.11 4.75 4.41 46.74 0.21 4.95 16 17 C 0.16 7.87 6.94 86.44 0.60 8.47 16 18 N -0.64 -33.56 3.70 -716.75 -2.65 -36.21 16 19 C -0.24 -13.49 10.70 84.03 0.90 -12.59 16 20 H 0.09 4.73 7.83 -2.91 -0.02 4.70 16 21 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 22 N -0.95 -58.70 11.39 21.65 0.25 -58.45 16 23 Si 0.98 46.36 29.55 68.60 2.03 48.39 16 24 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 25 H -0.29 -13.98 7.11 99.48 0.71 -13.28 16 26 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 27 C 0.12 4.87 8.44 86.48 0.73 5.60 16 28 H 0.07 1.75 6.92 -2.38 -0.02 1.73 16 29 H 0.07 2.13 6.20 -2.39 -0.01 2.11 16 30 H 0.10 2.14 5.79 -2.39 -0.01 2.13 16 31 H 0.15 2.86 8.05 -2.91 -0.02 2.84 16 32 H 0.17 1.26 8.06 -2.91 -0.02 1.23 16 33 H 0.14 3.61 5.34 -2.91 -0.02 3.59 16 34 H 0.43 -0.27 9.06 -74.06 -0.67 -0.94 16 35 H 0.10 -0.05 8.14 -2.39 -0.02 -0.07 16 36 H 0.10 0.09 8.14 -2.39 -0.02 0.07 16 37 H 0.10 0.11 8.12 -2.39 -0.02 0.09 16 38 H 0.10 4.46 7.20 -2.39 -0.02 4.44 16 39 H 0.04 1.79 6.74 -2.39 -0.02 1.78 16 40 H 0.04 2.21 7.17 -2.38 -0.02 2.19 16 41 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 42 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 43 H 0.06 2.24 6.90 -2.39 -0.02 2.23 16 Total: -1.00 -82.75 356.97 -0.76 -83.51 By element: Atomic # 1 Polarization: 7.34 SS G_CDS: 0.40 Total: 7.74 kcal Atomic # 6 Polarization: 23.98 SS G_CDS: 8.59 Total: 32.57 kcal Atomic # 7 Polarization: -131.93 SS G_CDS: -10.56 Total: -142.48 kcal Atomic # 8 Polarization: -28.51 SS G_CDS: -1.22 Total: -29.73 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -82.75 -0.76 -83.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044343577.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.106 kcal (2) G-P(sol) polarization free energy of solvation -82.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds