Wall clock time and date at job start Tue Mar 31 2020 06:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34778 * 119.99682 * 2 1 4 4 O 1.21648 * 120.00180 * 177.27905 * 3 2 1 5 5 C 1.47274 * 120.00369 * 357.28746 * 3 2 1 6 6 C 1.38441 * 120.03256 * 186.89103 * 5 3 2 7 7 C 1.40650 * 118.27106 * 179.97438 * 6 5 3 8 8 C 1.38254 * 133.40115 * 179.97438 * 7 6 5 9 9 C 1.39680 * 106.99773 * 180.02562 * 8 7 6 10 10 C 1.35640 * 108.08515 * 0.02562 * 9 8 7 11 11 N 1.35911 * 109.05555 * 359.97438 * 10 9 8 12 12 C 1.36910 * 132.42544 * 179.97438 * 11 10 9 13 13 N 1.29795 * 121.48208 * 179.68120 * 12 11 10 14 14 C 1.46490 * 120.00302 * 180.02562 * 2 1 3 15 15 H 1.08995 * 110.89092 * 183.88075 * 14 2 1 16 16 C 1.54917 * 111.00328 * 307.80285 * 14 2 1 17 17 N 1.47429 * 104.83256 * 155.08206 * 16 14 2 18 18 C 1.36935 * 125.64760 * 155.90331 * 17 16 14 19 19 H 1.08003 * 119.99835 * 0.02562 * 18 17 16 20 20 C 1.38808 * 119.99987 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00030 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00049 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47008 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47361 * 119.99484 * 22 20 18 25 25 H 1.48497 * 109.46803 * 239.99945 * 22 20 18 26 26 C 1.47321 * 108.73838 * 335.71723 * 17 16 14 27 27 C 1.54333 * 107.11863 * 1.30066 * 26 17 16 28 28 H 1.08999 * 110.71890 * 263.52572 * 27 26 17 29 29 O 1.42891 * 110.72076 * 140.43001 * 27 26 17 30 30 H 1.09000 * 109.47271 * 276.10800 * 1 2 3 31 31 H 1.09000 * 109.47019 * 36.11237 * 1 2 3 32 32 H 1.09000 * 109.47106 * 156.10874 * 1 2 3 33 33 H 1.07995 * 120.86195 * 0.03036 * 6 5 3 34 34 H 1.07998 * 126.50335 * 359.97438 * 8 7 6 35 35 H 1.08004 * 125.95640 * 180.02562 * 9 8 7 36 36 H 1.08002 * 125.47093 * 180.02562 * 10 9 8 37 37 H 1.08002 * 119.25533 * 0.04622 * 12 11 10 38 38 H 1.08998 * 110.36772 * 273.91932 * 16 14 2 39 39 H 1.08994 * 110.36199 * 36.13409 * 16 14 2 40 40 H 0.97003 * 119.99583 * 180.02562 * 21 20 18 41 41 H 1.08999 * 110.06238 * 241.87283 * 26 17 16 42 42 H 1.08999 * 109.85189 * 120.60363 * 26 17 16 43 43 H 0.96701 * 114.00463 * 63.84057 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3543 1.1679 0.0500 5 6 1.4037 2.4420 -0.0604 6 6 2.0937 3.6336 -0.2042 7 6 1.3545 4.8290 -0.2582 8 6 1.7076 6.1589 -0.3921 9 6 0.5232 6.8992 -0.3793 10 6 -0.5124 6.0342 -0.2408 11 7 -0.0256 4.7675 -0.1655 12 6 -0.6361 3.5503 -0.0241 13 7 0.0495 2.4490 0.0183 14 6 2.1975 -1.2686 -0.0006 15 1 3.2717 -1.0972 0.0684 16 6 1.7075 -2.1932 1.1417 17 7 2.0265 -3.5584 0.6854 18 6 2.2163 -4.6464 1.4949 19 1 2.1347 -4.5428 2.5668 20 6 2.5137 -5.8825 0.9377 21 7 2.6127 -6.0088 -0.3687 22 14 2.7719 -7.3670 2.0418 23 1 2.6063 -6.9629 3.4613 24 1 1.7740 -8.4139 1.7052 25 1 4.1411 -7.9040 1.8370 26 6 2.1031 -3.5598 -0.7858 27 6 1.8484 -2.1119 -1.2554 28 1 0.8035 -1.9749 -1.5335 29 8 2.7083 -1.7754 -2.3459 30 1 -0.3634 0.1093 1.0218 31 1 -0.3633 0.8302 -0.6057 32 1 -0.3633 -0.9396 -0.4162 33 1 3.1713 3.6448 -0.2741 34 1 2.7093 6.5512 -0.4874 35 1 0.4455 7.9730 -0.4648 36 1 -1.5563 6.3081 -0.1981 37 1 -1.7128 3.5050 0.0480 38 1 2.2392 -1.9684 2.0663 39 1 0.6330 -2.0811 1.2859 40 1 2.8201 -6.8728 -0.7581 41 1 1.3429 -4.2227 -1.1991 42 1 3.0937 -3.8840 -1.1046 43 1 2.5561 -2.3007 -3.1434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047425953.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:13 Heat of formation + Delta-G solvation = 65.496679 kcal Electronic energy + Delta-G solvation = -28081.125497 eV Core-core repulsion = 24129.853531 eV Total energy + Delta-G solvation = -3951.271966 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.70384 -40.01924 -38.14350 -37.36154 -35.18747 -34.71098 -33.42357 -31.92692 -31.24731 -29.11512 -28.26771 -27.28574 -26.49519 -24.93262 -24.32423 -23.34418 -21.59840 -20.69131 -20.40269 -19.32540 -18.64168 -17.43079 -17.04497 -16.77503 -16.30028 -16.13762 -15.84765 -15.53161 -14.98378 -14.67447 -14.63814 -14.16231 -13.93343 -13.29919 -13.11056 -12.88405 -12.83171 -12.76352 -12.67586 -12.57915 -12.30708 -12.11068 -11.90831 -11.35772 -11.20037 -10.90273 -10.85336 -10.78628 -10.35711 -10.09182 -9.93844 -9.82686 -9.60162 -9.30477 -9.24328 -8.70323 -8.31881 -7.80408 -6.91102 -5.75864 -3.10895 0.15605 0.84280 2.20025 2.50189 2.64065 3.05788 3.38787 3.44354 3.46863 3.53654 3.67393 4.21980 4.29099 4.45270 4.47113 4.71549 4.82715 4.91357 5.10207 5.24023 5.29198 5.39088 5.44802 5.47353 5.59402 5.71008 5.71787 5.81150 5.90192 5.92116 6.08688 6.14828 6.20549 6.21706 6.36085 6.53129 6.65707 6.75746 6.91469 7.29769 7.36068 7.48443 7.61927 7.74200 8.16586 8.22451 8.30290 9.14465 9.74864 10.38248 11.35712 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.031369 B = 0.002520 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.396980 B =11109.042906 C =11278.660045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.581 5.581 3 C 0.575 3.425 4 O -0.535 6.535 5 C 0.017 3.983 6 C -0.040 4.040 7 C 0.028 3.972 8 C -0.173 4.173 9 C -0.147 4.147 10 C -0.031 4.031 11 N -0.387 5.387 12 C 0.299 3.701 13 N -0.455 5.455 14 C 0.132 3.868 15 H 0.115 0.885 16 C 0.134 3.866 17 N -0.600 5.600 18 C -0.228 4.228 19 H 0.081 0.919 20 C -0.008 4.008 21 N -0.923 5.923 22 Si 0.915 3.085 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.154 3.846 27 C 0.065 3.935 28 H 0.056 0.944 29 O -0.561 6.561 30 H 0.055 0.945 31 H 0.103 0.897 32 H 0.063 0.937 33 H 0.164 0.836 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.176 0.824 37 H 0.208 0.792 38 H 0.048 0.952 39 H 0.028 0.972 40 H 0.253 0.747 41 H 0.048 0.952 42 H 0.061 0.939 43 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.865 24.403 -2.477 26.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.311 5.311 3 C 0.362 3.638 4 O -0.412 6.412 5 C -0.100 4.100 6 C -0.062 4.062 7 C -0.077 4.077 8 C -0.199 4.199 9 C -0.169 4.169 10 C -0.162 4.162 11 N -0.060 5.060 12 C 0.017 3.983 13 N -0.169 5.169 14 C 0.028 3.972 15 H 0.133 0.867 16 C 0.006 3.994 17 N -0.327 5.327 18 C -0.356 4.356 19 H 0.099 0.901 20 C -0.204 4.204 21 N -0.570 5.570 22 Si 0.746 3.254 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.028 3.972 27 C 0.004 3.996 28 H 0.074 0.926 29 O -0.366 6.366 30 H 0.074 0.926 31 H 0.121 0.879 32 H 0.082 0.918 33 H 0.181 0.819 34 H 0.169 0.831 35 H 0.169 0.831 36 H 0.193 0.807 37 H 0.224 0.776 38 H 0.066 0.934 39 H 0.045 0.955 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -9.343 23.454 -1.915 25.319 hybrid contribution 0.043 -0.566 0.016 0.568 sum -9.300 22.888 -1.900 24.778 Atomic orbital electron populations 1.22348 0.78650 1.03207 1.02672 1.47564 1.07661 1.05193 1.70664 1.17397 0.86440 0.82577 0.77389 1.90826 1.12769 1.86679 1.50945 1.20892 0.88633 0.94410 1.06071 1.21678 1.02028 0.88483 0.94014 1.18903 0.82240 0.95693 1.10816 1.21174 0.99670 0.89667 1.09355 1.21061 0.91498 0.99648 1.04728 1.21983 1.00364 0.80713 1.13093 1.43203 1.08259 1.07329 1.47200 1.25080 0.99908 0.77705 0.95580 1.68797 1.08007 1.24058 1.16004 1.22452 0.98486 0.81203 0.95075 0.86728 1.21754 0.97506 0.85396 0.94705 1.44320 1.83341 1.03234 1.01855 1.19123 1.41267 0.85784 0.89447 0.90085 1.24828 1.01715 0.97779 0.96092 1.69947 1.54931 1.23424 1.08706 0.85992 0.77466 0.82575 0.79403 1.20428 1.21717 1.21659 1.21896 1.01927 0.89054 0.84311 1.23584 0.92105 0.97281 0.86589 0.92619 1.86493 1.62054 1.63883 1.24147 0.92630 0.87916 0.91832 0.81881 0.83073 0.83088 0.80683 0.77603 0.93352 0.95491 0.93687 0.93406 0.92070 0.77996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.02 7.92 59.85 0.47 1.49 16 2 N -0.58 -10.06 2.91 -172.80 -0.50 -10.56 16 3 C 0.58 10.17 7.63 -12.59 -0.10 10.07 16 4 O -0.53 -11.11 15.74 5.24 0.08 -11.03 16 5 C 0.02 0.24 6.65 -82.43 -0.55 -0.30 16 6 C -0.04 -0.50 9.72 -38.60 -0.38 -0.87 16 7 C 0.03 0.30 6.78 -83.95 -0.57 -0.27 16 8 C -0.17 -1.51 10.98 -39.04 -0.43 -1.94 16 9 C -0.15 -1.00 10.80 -39.97 -0.43 -1.43 16 10 C -0.03 -0.20 11.61 -16.67 -0.19 -0.39 16 11 N -0.39 -3.39 2.95 -62.17 -0.18 -3.57 16 12 C 0.30 2.41 12.16 -89.22 -1.08 1.32 16 13 N -0.46 -5.15 6.04 -10.42 -0.06 -5.21 16 14 C 0.13 2.68 3.17 -65.78 -0.21 2.47 16 15 H 0.11 2.66 7.01 -51.93 -0.36 2.30 16 16 C 0.13 2.89 6.79 -2.52 -0.02 2.87 16 17 N -0.60 -15.54 3.40 -169.82 -0.58 -16.12 16 18 C -0.23 -6.40 10.28 -15.06 -0.15 -6.55 16 19 H 0.08 2.19 7.83 -52.48 -0.41 1.78 16 20 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 21 N -0.92 -27.01 10.31 55.49 0.57 -26.44 16 22 Si 0.92 22.17 29.55 -169.99 -5.02 17.15 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 C 0.15 3.76 5.16 -2.90 -0.01 3.74 16 27 C 0.06 1.30 3.86 -24.89 -0.10 1.21 16 28 H 0.06 1.02 6.47 -51.93 -0.34 0.69 16 29 O -0.56 -10.91 13.39 -35.23 -0.47 -11.38 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.10 1.27 5.14 -53.45 -0.27 0.99 16 32 H 0.06 0.88 6.36 -51.93 -0.33 0.55 16 33 H 0.16 1.97 7.67 -52.49 -0.40 1.57 16 34 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.15 0.64 8.06 -52.48 -0.42 0.21 16 36 H 0.18 0.49 8.06 -52.49 -0.42 0.06 16 37 H 0.21 0.68 8.06 -52.49 -0.42 0.26 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.03 0.55 6.94 -51.93 -0.36 0.19 16 40 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.05 1.25 7.53 -51.93 -0.39 0.86 16 42 H 0.06 1.69 7.29 -51.93 -0.38 1.31 16 43 H 0.37 5.62 9.12 45.56 0.42 6.04 16 LS Contribution 352.79 15.07 5.32 5.32 Total: -1.00 -35.81 352.79 -9.20 -45.00 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -4.50 Total: 5.74 kcal Atomic # 6 Polarization: 14.94 SS G_CDS: -3.84 Total: 11.10 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: -0.75 Total: -61.90 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.39 Total: -22.41 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.81 -9.20 -45.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047425953.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.501 kcal (2) G-P(sol) polarization free energy of solvation -35.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.004 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds