Wall clock time and date at job start Tue Mar 31 2020 06:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.34778 * 119.99682 * 2 1 4 4 O 1.21648 * 120.00180 * 177.27905 * 3 2 1 5 5 C 1.47274 * 120.00369 * 357.28746 * 3 2 1 6 6 C 1.38441 * 120.03256 * 186.89103 * 5 3 2 7 7 C 1.40650 * 118.27106 * 179.97438 * 6 5 3 8 8 C 1.38254 * 133.40115 * 179.97438 * 7 6 5 9 9 C 1.39680 * 106.99773 * 180.02562 * 8 7 6 10 10 C 1.35640 * 108.08515 * 0.02562 * 9 8 7 11 11 N 1.35911 * 109.05555 * 359.97438 * 10 9 8 12 12 C 1.36910 * 132.42544 * 179.97438 * 11 10 9 13 13 N 1.29795 * 121.48208 * 179.68120 * 12 11 10 14 14 C 1.46490 * 120.00302 * 180.02562 * 2 1 3 15 15 H 1.08995 * 110.89092 * 183.88075 * 14 2 1 16 16 C 1.54917 * 111.00328 * 307.80285 * 14 2 1 17 17 N 1.47429 * 104.83256 * 155.08206 * 16 14 2 18 18 C 1.36935 * 125.64760 * 155.90331 * 17 16 14 19 19 H 1.08003 * 119.99835 * 0.02562 * 18 17 16 20 20 C 1.38808 * 119.99987 * 180.02562 * 18 17 16 21 21 N 1.31623 * 120.00030 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00049 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47008 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47361 * 119.99484 * 22 20 18 25 25 H 1.48497 * 109.46803 * 239.99945 * 22 20 18 26 26 C 1.47321 * 108.73838 * 335.71723 * 17 16 14 27 27 C 1.54333 * 107.11863 * 1.30066 * 26 17 16 28 28 H 1.08999 * 110.71890 * 263.52572 * 27 26 17 29 29 O 1.42891 * 110.72076 * 140.43001 * 27 26 17 30 30 H 1.09000 * 109.47271 * 276.10800 * 1 2 3 31 31 H 1.09000 * 109.47019 * 36.11237 * 1 2 3 32 32 H 1.09000 * 109.47106 * 156.10874 * 1 2 3 33 33 H 1.07995 * 120.86195 * 0.03036 * 6 5 3 34 34 H 1.07998 * 126.50335 * 359.97438 * 8 7 6 35 35 H 1.08004 * 125.95640 * 180.02562 * 9 8 7 36 36 H 1.08002 * 125.47093 * 180.02562 * 10 9 8 37 37 H 1.08002 * 119.25533 * 0.04622 * 12 11 10 38 38 H 1.08998 * 110.36772 * 273.91932 * 16 14 2 39 39 H 1.08994 * 110.36199 * 36.13409 * 16 14 2 40 40 H 0.97003 * 119.99583 * 180.02562 * 21 20 18 41 41 H 1.08999 * 110.06238 * 241.87283 * 26 17 16 42 42 H 1.08999 * 109.85189 * 120.60363 * 26 17 16 43 43 H 0.96701 * 114.00463 * 63.84057 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3543 1.1679 0.0500 5 6 1.4037 2.4420 -0.0604 6 6 2.0937 3.6336 -0.2042 7 6 1.3545 4.8290 -0.2582 8 6 1.7076 6.1589 -0.3921 9 6 0.5232 6.8992 -0.3793 10 6 -0.5124 6.0342 -0.2408 11 7 -0.0256 4.7675 -0.1655 12 6 -0.6361 3.5503 -0.0241 13 7 0.0495 2.4490 0.0183 14 6 2.1975 -1.2686 -0.0006 15 1 3.2717 -1.0972 0.0684 16 6 1.7075 -2.1932 1.1417 17 7 2.0265 -3.5584 0.6854 18 6 2.2163 -4.6464 1.4949 19 1 2.1347 -4.5428 2.5668 20 6 2.5137 -5.8825 0.9377 21 7 2.6127 -6.0088 -0.3687 22 14 2.7719 -7.3670 2.0418 23 1 2.6063 -6.9629 3.4613 24 1 1.7740 -8.4139 1.7052 25 1 4.1411 -7.9040 1.8370 26 6 2.1031 -3.5598 -0.7858 27 6 1.8484 -2.1119 -1.2554 28 1 0.8035 -1.9749 -1.5335 29 8 2.7083 -1.7754 -2.3459 30 1 -0.3634 0.1093 1.0218 31 1 -0.3633 0.8302 -0.6057 32 1 -0.3633 -0.9396 -0.4162 33 1 3.1713 3.6448 -0.2741 34 1 2.7093 6.5512 -0.4874 35 1 0.4455 7.9730 -0.4648 36 1 -1.5563 6.3081 -0.1981 37 1 -1.7128 3.5050 0.0480 38 1 2.2392 -1.9684 2.0663 39 1 0.6330 -2.0811 1.2859 40 1 2.8201 -6.8728 -0.7581 41 1 1.3429 -4.2227 -1.1991 42 1 3.0937 -3.8840 -1.1046 43 1 2.5561 -2.3007 -3.1434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047425953.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:12 Heat of formation + Delta-G solvation = 41.076661 kcal Electronic energy + Delta-G solvation = -28082.184428 eV Core-core repulsion = 24129.853531 eV Total energy + Delta-G solvation = -3952.330897 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.35114 -41.35229 -39.60874 -38.35209 -36.77950 -36.36198 -34.20686 -33.81685 -31.99656 -30.60783 -29.54810 -28.88202 -27.77763 -26.47399 -25.36220 -24.35006 -22.40211 -22.29218 -21.78241 -20.60257 -19.64104 -19.03366 -18.46904 -18.11953 -17.60364 -16.96201 -16.88805 -16.78295 -16.28858 -16.14906 -15.83993 -15.50132 -15.26018 -14.77848 -14.54629 -14.27824 -14.06228 -13.96556 -13.68986 -13.53207 -13.43119 -13.30122 -13.20405 -13.06170 -12.92536 -12.77437 -12.64955 -12.05325 -11.91309 -11.69660 -11.68924 -11.49077 -10.97294 -10.80870 -10.62281 -9.90549 -9.72360 -8.99843 -8.53326 -7.90178 -5.28492 -0.67015 0.18497 1.44921 1.46925 1.56041 1.57060 1.62939 1.77009 1.98172 2.45973 2.58481 2.88541 3.09515 3.30930 3.42864 3.54153 3.62387 3.80479 3.91255 3.97659 4.04908 4.05676 4.28976 4.36156 4.42244 4.45491 4.49124 4.63180 4.65177 4.74414 4.84990 4.98110 5.15163 5.18576 5.26713 5.33657 5.39965 5.49023 5.55310 5.62091 5.75802 6.09321 6.22560 6.27018 6.60659 6.80122 6.99286 7.01596 7.65507 8.29023 9.20049 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.031369 B = 0.002520 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.396980 B =11109.042906 C =11278.660045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.582 5.582 3 C 0.568 3.432 4 O -0.584 6.584 5 C -0.011 4.011 6 C -0.039 4.039 7 C -0.016 4.016 8 C -0.166 4.166 9 C -0.158 4.158 10 C 0.001 3.999 11 N -0.398 5.398 12 C 0.320 3.680 13 N -0.479 5.479 14 C 0.142 3.858 15 H 0.078 0.922 16 C 0.138 3.862 17 N -0.621 5.621 18 C -0.245 4.245 19 H 0.086 0.914 20 C -0.064 4.064 21 N -0.950 5.950 22 Si 0.984 3.016 23 H -0.265 1.265 24 H -0.287 1.287 25 H -0.294 1.294 26 C 0.166 3.834 27 C 0.084 3.916 28 H 0.084 0.916 29 O -0.572 6.572 30 H 0.065 0.935 31 H 0.124 0.876 32 H 0.063 0.937 33 H 0.149 0.851 34 H 0.159 0.841 35 H 0.181 0.819 36 H 0.222 0.778 37 H 0.260 0.740 38 H 0.041 0.959 39 H 0.051 0.949 40 H 0.249 0.751 41 H 0.027 0.973 42 H 0.020 0.980 43 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.260 27.389 -2.102 30.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.311 5.311 3 C 0.358 3.642 4 O -0.465 6.465 5 C -0.126 4.126 6 C -0.062 4.062 7 C -0.119 4.119 8 C -0.193 4.193 9 C -0.180 4.180 10 C -0.130 4.130 11 N -0.071 5.071 12 C 0.038 3.962 13 N -0.193 5.193 14 C 0.037 3.963 15 H 0.096 0.904 16 C 0.011 3.989 17 N -0.349 5.349 18 C -0.374 4.374 19 H 0.104 0.896 20 C -0.257 4.257 21 N -0.599 5.599 22 Si 0.812 3.188 23 H -0.189 1.189 24 H -0.214 1.214 25 H -0.221 1.221 26 C 0.040 3.960 27 C 0.024 3.976 28 H 0.102 0.898 29 O -0.379 6.379 30 H 0.084 0.916 31 H 0.141 0.859 32 H 0.081 0.919 33 H 0.167 0.833 34 H 0.177 0.823 35 H 0.198 0.802 36 H 0.238 0.762 37 H 0.276 0.724 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.045 0.955 42 H 0.039 0.961 43 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -12.762 26.457 -1.542 29.414 hybrid contribution 1.039 -1.169 -0.118 1.568 sum -11.723 25.288 -1.660 27.923 Atomic orbital electron populations 1.22569 0.76164 1.04035 1.03840 1.47590 1.08958 1.03866 1.70660 1.18032 0.86205 0.83850 0.76137 1.90778 1.14978 1.87546 1.53162 1.20251 0.90074 0.92437 1.09873 1.21622 1.01645 0.89336 0.93548 1.18897 0.83568 0.95502 1.13931 1.21594 1.01185 0.89375 1.07105 1.21527 0.90614 1.01247 1.04594 1.22873 1.02328 0.79309 1.08489 1.43423 1.07449 1.08410 1.47840 1.26040 1.01404 0.76639 0.92095 1.68580 1.06324 1.26004 1.18343 1.21977 0.96921 0.82720 0.94707 0.90428 1.21824 0.98518 0.83734 0.94802 1.44587 1.83427 1.04432 1.02428 1.19505 1.40998 0.86751 0.90111 0.89619 1.25711 1.01883 1.00592 0.97545 1.70154 1.55767 1.23695 1.10276 0.84935 0.76811 0.78808 0.78283 1.18935 1.21374 1.22075 1.21630 0.98895 0.91518 0.83922 1.23343 0.93483 0.94097 0.86727 0.89821 1.86465 1.62325 1.64259 1.24874 0.91603 0.85871 0.91883 0.83327 0.82307 0.80200 0.76161 0.72423 0.94028 0.93144 0.94143 0.95454 0.96130 0.75786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.96 7.92 127.77 1.01 2.98 16 2 N -0.58 -20.50 2.91 -818.84 -2.38 -22.88 16 3 C 0.57 21.04 7.63 86.62 0.66 21.70 16 4 O -0.58 -26.18 15.74 -4.18 -0.07 -26.24 16 5 C -0.01 -0.31 6.65 40.98 0.27 -0.04 16 6 C -0.04 -1.00 9.72 22.91 0.22 -0.78 16 7 C -0.02 -0.31 6.78 38.69 0.26 -0.05 16 8 C -0.17 -2.53 10.98 22.62 0.25 -2.28 16 9 C -0.16 -1.46 10.80 22.02 0.24 -1.22 16 10 C 0.00 0.01 11.61 83.46 0.97 0.98 16 11 N -0.40 -5.48 2.95 -350.61 -1.04 -6.52 16 12 C 0.32 3.90 12.16 179.86 2.19 6.09 16 13 N -0.48 -9.92 6.04 -186.88 -1.13 -11.05 16 14 C 0.14 6.01 3.17 46.39 0.15 6.15 16 15 H 0.08 3.87 7.01 -2.39 -0.02 3.85 16 16 C 0.14 6.08 6.79 86.86 0.59 6.67 16 17 N -0.62 -33.19 3.40 -691.20 -2.35 -35.54 16 18 C -0.25 -14.05 10.28 84.03 0.86 -13.18 16 19 H 0.09 4.69 7.83 -2.91 -0.02 4.67 16 20 C -0.06 -3.70 5.49 84.86 0.47 -3.24 16 21 N -0.95 -57.52 10.31 21.65 0.22 -57.29 16 22 Si 0.98 46.30 29.55 68.60 2.03 48.33 16 23 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 25 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 26 C 0.17 8.48 5.16 86.68 0.45 8.93 16 27 C 0.08 3.45 3.86 31.79 0.12 3.57 16 28 H 0.08 3.00 6.47 -2.39 -0.02 2.99 16 29 O -0.57 -22.79 13.39 -148.98 -1.99 -24.78 16 30 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.12 2.79 5.14 -5.40 -0.03 2.76 16 32 H 0.06 1.64 6.36 -2.39 -0.02 1.62 16 33 H 0.15 4.02 7.67 -2.91 -0.02 4.00 16 34 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 35 H 0.18 0.58 8.06 -2.91 -0.02 0.56 16 36 H 0.22 -0.46 8.06 -2.91 -0.02 -0.48 16 37 H 0.26 0.09 8.06 -2.91 -0.02 0.07 16 38 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.05 2.02 6.94 -2.39 -0.02 2.01 16 40 H 0.25 14.58 8.31 -92.71 -0.77 13.80 16 41 H 0.03 1.49 7.53 -2.39 -0.02 1.47 16 42 H 0.02 1.20 7.29 -2.39 -0.02 1.18 16 43 H 0.39 11.98 9.12 -74.06 -0.68 11.31 16 Total: -1.00 -83.70 352.79 2.37 -81.32 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.37 Total: 18.38 kcal Atomic # 6 Polarization: 27.56 SS G_CDS: 8.71 Total: 36.27 kcal Atomic # 7 Polarization: -126.61 SS G_CDS: -6.67 Total: -133.28 kcal Atomic # 8 Polarization: -48.97 SS G_CDS: -2.06 Total: -51.03 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Total: -83.70 2.37 -81.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047425953.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.400 kcal (2) G-P(sol) polarization free energy of solvation -83.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds