Wall clock time and date at job start Tue Mar 31 2020 06:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34769 * 120.00076 * 2 1 4 4 O 1.21778 * 119.99980 * 181.37058 * 3 2 1 5 5 C 1.41814 * 120.00016 * 1.37036 * 3 2 1 6 6 C 1.38527 * 126.78580 * 344.74285 * 5 3 2 7 7 N 1.32330 * 108.21284 * 179.97438 * 6 5 3 8 8 C 1.33196 * 109.81743 * 359.97438 * 7 6 5 9 9 C 1.40657 * 131.81855 * 180.02562 * 8 7 6 10 10 C 1.36284 * 119.38294 * 180.02562 * 9 8 7 11 11 C 1.40174 * 119.61141 * 0.02562 * 10 9 8 12 12 C 1.35268 * 120.12356 * 359.97438 * 11 10 9 13 13 N 1.35957 * 120.63885 * 359.97438 * 12 11 10 14 14 C 1.46507 * 119.99806 * 179.97438 * 2 1 3 15 15 H 1.08997 * 110.88320 * 177.57671 * 14 2 1 16 16 C 1.54907 * 111.00268 * 301.45659 * 14 2 1 17 17 N 1.47433 * 104.82636 * 155.08572 * 16 14 2 18 18 C 1.36940 * 125.64360 * 155.90908 * 17 16 14 19 19 H 1.08002 * 120.00191 * 359.97438 * 18 17 16 20 20 C 1.38815 * 119.99511 * 179.97438 * 18 17 16 21 21 N 1.31624 * 120.00244 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99788 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47064 * 359.97438 * 22 20 18 24 24 H 1.48489 * 109.47195 * 119.99989 * 22 20 18 25 25 H 1.48509 * 109.46585 * 239.99870 * 22 20 18 26 26 C 1.47020 * 108.70346 * 335.86624 * 17 16 14 27 27 C 1.54322 * 107.27188 * 1.06227 * 26 17 16 28 28 H 1.08998 * 110.72328 * 263.82548 * 27 26 17 29 29 O 1.42906 * 110.71711 * 140.55181 * 27 26 17 30 30 H 1.09004 * 109.46948 * 84.30153 * 1 2 3 31 31 H 1.08999 * 109.46934 * 204.29253 * 1 2 3 32 32 H 1.08991 * 109.47253 * 324.29838 * 1 2 3 33 33 H 1.08000 * 125.89061 * 0.02562 * 6 5 3 34 34 H 1.07999 * 120.30696 * 359.72262 * 9 8 7 35 35 H 1.07999 * 120.19348 * 180.02562 * 10 9 8 36 36 H 1.07995 * 119.94248 * 179.97438 * 11 10 9 37 37 H 1.07994 * 119.67680 * 180.02562 * 12 11 10 38 38 H 1.08996 * 110.36654 * 273.91609 * 16 14 2 39 39 H 1.08992 * 110.37009 * 36.14281 * 16 14 2 40 40 H 0.96994 * 119.99639 * 180.02562 * 21 20 18 41 41 H 1.09004 * 109.88062 * 120.47949 * 26 17 16 42 42 H 1.08995 * 109.88294 * 241.48716 * 26 17 16 43 43 H 0.96693 * 113.99646 * 66.48207 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3564 1.1673 -0.0252 5 6 1.4302 2.3951 0.0294 6 6 0.0827 2.5817 -0.2325 7 7 -0.1899 3.8698 -0.1000 8 6 0.9152 4.5329 0.2365 9 6 1.1502 5.8964 0.4900 10 6 2.4065 6.3081 0.8210 11 6 3.4439 5.3690 0.9033 12 6 3.1979 4.0621 0.6558 13 7 1.9473 3.6429 0.3260 14 6 2.1976 -1.2688 0.0006 15 1 3.2730 -1.0966 -0.0426 16 6 1.8216 -2.1264 1.2346 17 7 2.0991 -3.5159 0.8271 18 6 2.3683 -4.5573 1.6745 19 1 2.3901 -4.3934 2.7418 20 6 2.6133 -5.8238 1.1617 21 7 2.5863 -6.0237 -0.1390 22 14 2.9812 -7.2444 2.3175 23 1 2.9533 -6.7604 3.7212 24 1 1.9581 -8.3056 2.1388 25 1 4.3256 -7.7962 2.0113 26 6 2.0380 -3.5982 -0.6395 27 6 1.7321 -2.1801 -1.1657 28 1 0.6643 -2.0584 -1.3478 29 8 2.4828 -1.9077 -2.3508 30 1 -0.3633 0.1020 -1.0226 31 1 -0.3633 -0.9367 0.4228 32 1 -0.3633 0.8345 0.5997 33 1 -0.6235 1.8090 -0.4981 34 1 0.3437 6.6110 0.4182 35 1 2.6016 7.3517 1.0188 36 1 4.4416 5.6894 1.1648 37 1 4.0024 3.3447 0.7217 38 1 2.4387 -1.8515 2.0899 39 1 0.7655 -2.0035 1.4744 40 1 2.7571 -6.9087 -0.4973 41 1 2.9957 -3.9406 -1.0318 42 1 1.2475 -4.2861 -0.9395 43 1 2.2305 -2.4512 -3.1097 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047434383.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:42 Heat of formation + Delta-G solvation = 71.796291 kcal Electronic energy + Delta-G solvation = -28368.467790 eV Core-core repulsion = 24417.468996 eV Total energy + Delta-G solvation = -3950.998794 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.17947 -39.91392 -37.91932 -37.61022 -35.33678 -34.88000 -33.84183 -32.11094 -30.72471 -29.75181 -28.28056 -27.51404 -26.88675 -24.81923 -24.07634 -23.39392 -22.40079 -20.89192 -20.44222 -19.38211 -17.76357 -17.40879 -17.08195 -16.97082 -16.60276 -16.42588 -15.78273 -15.68171 -14.96367 -14.89416 -14.62759 -14.26928 -14.07011 -13.95733 -13.16716 -13.05378 -12.74566 -12.71022 -12.38113 -12.27934 -12.19837 -12.06583 -11.53327 -11.49874 -11.29825 -11.25360 -10.88986 -10.83338 -10.58736 -10.14693 -9.96065 -9.86178 -9.84777 -9.31451 -9.16860 -8.75587 -8.49849 -8.10654 -6.95115 -5.79506 -3.14892 0.42321 0.58697 2.05321 2.17256 3.17275 3.19472 3.32041 3.36499 3.42275 3.44582 3.87341 4.19399 4.41360 4.46599 4.52032 4.62890 4.73297 4.78920 4.99756 5.05807 5.15546 5.19088 5.36080 5.43136 5.48661 5.57030 5.61117 5.63896 5.70683 5.77533 5.80612 6.00005 6.09965 6.14598 6.18568 6.43743 6.53889 6.67910 6.83182 7.31960 7.42336 7.44985 7.48850 7.71023 8.13163 8.17509 8.21868 9.11084 9.71125 10.33807 11.31882 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.024792 B = 0.002743 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.135024 B =10204.859595 C =10464.379737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.585 5.585 3 C 0.595 3.405 4 O -0.552 6.552 5 C -0.133 4.133 6 C 0.086 3.914 7 N -0.498 5.498 8 C 0.239 3.761 9 C -0.092 4.092 10 C -0.087 4.087 11 C -0.149 4.149 12 C 0.078 3.922 13 N -0.323 5.323 14 C 0.137 3.863 15 H 0.117 0.883 16 C 0.131 3.869 17 N -0.599 5.599 18 C -0.230 4.230 19 H 0.081 0.919 20 C -0.007 4.007 21 N -0.922 5.922 22 Si 0.915 3.085 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.152 3.848 27 C 0.066 3.934 28 H 0.057 0.943 29 O -0.561 6.561 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.209 0.791 34 H 0.155 0.845 35 H 0.146 0.854 36 H 0.156 0.844 37 H 0.177 0.823 38 H 0.049 0.951 39 H 0.027 0.973 40 H 0.253 0.747 41 H 0.060 0.940 42 H 0.049 0.951 43 H 0.374 0.626 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.464 22.462 -0.569 22.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.316 5.316 3 C 0.385 3.615 4 O -0.432 6.432 5 C -0.248 4.248 6 C -0.073 4.073 7 N -0.217 5.217 8 C -0.001 4.001 9 C -0.112 4.112 10 C -0.112 4.112 11 C -0.169 4.169 12 C -0.046 4.046 13 N 0.007 4.993 14 C 0.033 3.967 15 H 0.135 0.865 16 C 0.004 3.996 17 N -0.326 5.326 18 C -0.358 4.358 19 H 0.099 0.901 20 C -0.203 4.203 21 N -0.569 5.569 22 Si 0.746 3.254 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.027 3.973 27 C 0.006 3.994 28 H 0.075 0.925 29 O -0.365 6.365 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.225 0.775 34 H 0.172 0.828 35 H 0.164 0.836 36 H 0.173 0.827 37 H 0.194 0.806 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.064 0.936 41 H 0.079 0.921 42 H 0.067 0.933 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -4.214 22.943 -0.310 23.329 hybrid contribution 0.622 -1.677 0.217 1.802 sum -3.592 21.266 -0.093 21.568 Atomic orbital electron populations 1.22538 0.80168 1.04702 1.01829 1.47339 1.06715 1.05355 1.72225 1.15386 0.86579 0.82222 0.77263 1.90814 1.13156 1.87387 1.51815 1.19873 0.95530 0.85848 1.23507 1.24211 0.92463 0.93994 0.96680 1.70569 1.24083 1.05093 1.21951 1.21149 0.83479 0.92340 1.03134 1.20333 0.98706 0.90615 1.01546 1.21166 0.91775 1.00713 0.97507 1.20958 1.01391 0.91007 1.03543 1.22097 0.86305 0.97840 0.98376 1.42421 1.08681 1.07809 1.40348 1.22439 0.98425 0.80488 0.95353 0.86543 1.21787 0.97973 0.85631 0.94199 1.44244 1.83365 1.03009 1.02022 1.19117 1.41309 0.86425 0.88968 0.90072 1.24831 1.01656 0.97630 0.96181 1.69943 1.55502 1.21538 1.09914 0.85995 0.77629 0.82191 0.79634 1.20417 1.21670 1.21645 1.21848 1.01836 0.89540 0.84098 1.23551 0.93552 0.97367 0.84969 0.92480 1.86500 1.64003 1.64786 1.21245 0.91800 0.89453 0.89723 0.77451 0.82762 0.83614 0.82684 0.80628 0.93322 0.95520 0.93644 0.92144 0.93272 0.77923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.58 7.34 59.85 0.44 1.02 16 2 N -0.59 -9.32 2.91 -174.81 -0.51 -9.83 16 3 C 0.60 10.13 7.48 -14.90 -0.11 10.02 16 4 O -0.55 -11.06 14.89 5.12 0.08 -10.98 16 5 C -0.13 -1.96 6.61 -83.48 -0.55 -2.51 16 6 C 0.09 1.08 9.62 -17.23 -0.17 0.92 16 7 N -0.50 -6.67 11.25 -12.27 -0.14 -6.81 16 8 C 0.24 2.98 7.77 -156.07 -1.21 1.76 16 9 C -0.09 -0.79 10.10 -39.37 -0.40 -1.19 16 10 C -0.09 -0.57 10.07 -39.56 -0.40 -0.97 16 11 C -0.15 -1.12 10.00 -39.91 -0.40 -1.52 16 12 C 0.08 0.88 10.52 -16.78 -0.18 0.70 16 13 N -0.32 -4.35 2.96 -60.14 -0.18 -4.52 16 14 C 0.14 2.62 3.17 -65.78 -0.21 2.41 16 15 H 0.12 2.60 7.01 -51.93 -0.36 2.23 16 16 C 0.13 2.70 6.79 -2.53 -0.02 2.69 16 17 N -0.60 -15.02 3.39 -170.07 -0.58 -15.60 16 18 C -0.23 -6.31 10.28 -15.06 -0.15 -6.47 16 19 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 20 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 21 N -0.92 -26.52 10.31 55.49 0.57 -25.95 16 22 Si 0.92 21.83 29.55 -169.99 -5.02 16.81 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.15 3.60 5.15 -3.07 -0.02 3.59 16 27 C 0.07 1.25 3.89 -24.90 -0.10 1.16 16 28 H 0.06 0.96 7.07 -51.93 -0.37 0.59 16 29 O -0.56 -10.39 13.39 -35.23 -0.47 -10.86 16 30 H 0.06 0.62 7.48 -51.93 -0.39 0.23 16 31 H 0.09 1.01 6.33 -51.93 -0.33 0.69 16 32 H 0.08 0.83 4.99 -51.93 -0.26 0.57 16 33 H 0.21 1.98 4.55 -52.49 -0.24 1.74 16 34 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 36 H 0.16 0.68 8.06 -52.49 -0.42 0.26 16 37 H 0.18 2.07 6.94 -52.49 -0.36 1.70 16 38 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 39 H 0.03 0.51 6.34 -51.93 -0.33 0.18 16 40 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.06 1.63 7.30 -51.93 -0.38 1.25 16 42 H 0.05 1.25 7.50 -51.93 -0.39 0.86 16 43 H 0.37 5.31 9.12 45.56 0.42 5.72 16 LS Contribution 347.30 15.07 5.23 5.23 Total: -1.00 -35.88 347.30 -8.81 -44.68 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -4.23 Total: 6.51 kcal Atomic # 6 Polarization: 14.89 SS G_CDS: -3.56 Total: 11.32 kcal Atomic # 7 Polarization: -61.87 SS G_CDS: -0.83 Total: -62.70 kcal Atomic # 8 Polarization: -21.45 SS G_CDS: -0.40 Total: -21.85 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.88 -8.81 -44.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047434383.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.480 kcal (2) G-P(sol) polarization free energy of solvation -35.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds