Wall clock time and date at job start Tue Mar 31 2020 06:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34773 * 120.00454 * 2 1 4 4 O 1.21637 * 120.00370 * 175.63095 * 3 2 1 5 5 C 1.47309 * 119.99639 * 355.62882 * 3 2 1 6 6 C 1.46612 * 120.61680 * 40.40253 * 5 3 2 7 7 C 1.34232 * 119.81414 * 179.97438 * 6 5 3 8 8 N 1.37389 * 120.95112 * 359.97438 * 7 6 5 9 9 C 1.34892 * 132.30988 * 180.02562 * 8 7 6 10 10 N 1.30994 * 109.51101 * 180.02562 * 9 8 7 11 11 C 1.33126 * 109.92447 * 359.97438 * 10 9 8 12 12 C 1.38192 * 120.83029 * 0.02562 * 8 7 6 13 13 C 1.38578 * 120.61350 * 220.12135 * 5 3 2 14 14 C 1.46501 * 119.99685 * 179.97438 * 2 1 3 15 15 H 1.09007 * 110.63852 * 178.30902 * 14 2 1 16 16 C 1.54315 * 110.72361 * 301.45834 * 14 2 1 17 17 N 1.47023 * 107.27402 * 140.73323 * 16 14 2 18 18 C 1.36939 * 125.65056 * 181.01775 * 17 16 14 19 19 H 1.08004 * 119.99628 * 10.64417 * 18 17 16 20 20 C 1.38807 * 119.99925 * 190.63947 * 18 17 16 21 21 N 1.31617 * 120.00416 * 8.81302 * 20 18 17 22 22 Si 1.86799 * 119.99545 * 188.53716 * 20 18 17 23 23 H 1.48504 * 109.47150 * 265.27956 * 22 20 18 24 24 H 1.48498 * 109.47758 * 25.28270 * 22 20 18 25 25 H 1.48502 * 109.47297 * 145.28670 * 22 20 18 26 26 C 1.47420 * 108.70077 * 1.28939 * 17 16 14 27 27 C 1.55134 * 104.72556 * 335.54912 * 26 17 16 28 28 H 1.08996 * 111.19216 * 279.19988 * 27 26 17 29 29 O 1.42893 * 110.94156 * 155.28800 * 27 26 17 30 30 H 1.08995 * 109.46855 * 275.25872 * 1 2 3 31 31 H 1.09000 * 109.46765 * 35.25389 * 1 2 3 32 32 H 1.09002 * 109.46966 * 155.25419 * 1 2 3 33 33 H 1.07999 * 120.09173 * 359.94984 * 6 5 3 34 34 H 1.07991 * 119.52283 * 180.02562 * 7 6 5 35 35 H 1.08007 * 125.24637 * 359.97438 * 9 8 7 36 36 H 1.08004 * 126.30542 * 180.02562 * 11 10 9 37 37 H 1.07998 * 120.49505 * 0.02562 * 13 5 3 38 38 H 1.09003 * 109.88156 * 21.31172 * 16 14 2 39 39 H 1.09006 * 109.88370 * 260.14968 * 16 14 2 40 40 H 0.96997 * 120.00651 * 179.72031 * 21 20 18 41 41 H 1.08992 * 110.37106 * 94.48257 * 26 17 16 42 42 H 1.09010 * 110.36538 * 216.80605 * 26 17 16 43 43 H 0.96706 * 113.99891 * 67.96374 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 3.3527 1.1686 0.0802 5 6 1.4057 2.4410 -0.0972 6 6 0.1491 2.6368 0.6323 7 6 -0.5056 3.8044 0.5325 8 7 -0.0154 4.8251 -0.2455 9 6 -0.4719 6.0672 -0.5071 10 7 0.3559 6.6754 -1.3200 11 6 1.3725 5.8696 -1.6188 12 6 1.1659 4.6763 -0.9472 13 6 1.8938 3.4786 -0.8754 14 6 2.1975 -1.2688 0.0006 15 1 3.2726 -1.0918 -0.0296 16 6 1.8181 -2.1177 1.2321 17 7 1.7365 -3.5173 0.7892 18 6 1.4058 -4.5862 1.5787 19 1 1.0123 -4.4232 2.5712 20 6 1.5761 -5.8792 1.1032 21 7 2.2130 -6.0851 -0.0301 22 14 0.9082 -7.3274 2.0758 23 1 1.9805 -7.8779 2.9432 24 1 -0.2276 -6.8759 2.9190 25 1 0.4410 -8.3800 1.1382 26 6 2.0759 -3.5801 -0.6440 27 6 1.7549 -2.1631 -1.1877 28 1 0.6893 -2.0494 -1.3865 29 8 2.5247 -1.8784 -2.3574 30 1 -0.3633 0.0942 1.0233 31 1 -0.3633 0.8392 -0.5932 32 1 -0.3633 -0.9333 -0.4302 33 1 -0.2489 1.8437 1.2479 34 1 -1.4305 3.9437 1.0722 35 1 -1.3804 6.4941 -0.1085 36 1 2.2052 6.1034 -2.2656 37 1 2.8188 3.3661 -1.4213 38 1 0.8525 -1.7951 1.6216 39 1 2.5832 -2.0166 2.0020 40 1 2.3356 -6.9888 -0.3603 41 1 3.1338 -3.8080 -0.7737 42 1 1.4616 -4.3270 -1.1470 43 1 2.2839 -2.4130 -3.1265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047446964.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:35 Heat of formation + Delta-G solvation = 33.584064 kcal Electronic energy + Delta-G solvation = -28065.221710 eV Core-core repulsion = 24112.565909 eV Total energy + Delta-G solvation = -3952.655801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.70319 -41.42717 -39.54345 -37.86954 -36.76911 -36.39041 -34.42105 -33.81939 -31.96593 -30.46511 -29.44312 -28.99755 -27.84361 -26.54271 -25.11752 -24.05889 -22.83918 -22.41151 -21.92381 -20.38753 -19.16373 -19.01363 -18.79509 -18.22237 -17.49691 -17.17197 -16.83615 -16.69200 -16.22244 -15.93665 -15.63327 -15.43213 -15.39585 -15.01039 -14.73931 -14.45216 -14.37559 -14.06563 -13.82307 -13.59349 -13.35564 -13.14764 -13.08239 -12.88888 -12.73844 -12.65670 -12.57022 -12.06416 -11.91347 -11.75266 -11.59979 -11.36686 -11.17706 -10.90512 -10.74714 -10.26324 -9.76028 -8.95207 -8.56479 -7.91109 -5.29620 -0.48584 0.15755 1.48117 1.48201 1.49470 1.58862 1.65134 1.76231 2.07299 2.37607 2.47940 3.04096 3.27482 3.32329 3.46757 3.61889 3.66030 3.76692 3.80775 3.90919 3.95840 3.99162 4.10263 4.23536 4.36705 4.45343 4.47117 4.52980 4.63985 4.75272 4.81831 4.85046 4.91587 4.97931 5.03197 5.30136 5.39734 5.42841 5.45447 5.49924 5.60654 6.11642 6.21525 6.26823 6.81532 6.82589 6.96933 7.01280 7.66965 8.31994 9.20108 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.028151 B = 0.002591 C = 0.002476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.388788 B =10803.102416 C =11305.939039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.589 5.589 3 C 0.563 3.437 4 O -0.582 6.582 5 C -0.148 4.148 6 C -0.121 4.121 7 C 0.058 3.942 8 N -0.372 5.372 9 C 0.166 3.834 10 N -0.495 5.495 11 C -0.006 4.006 12 C -0.032 4.032 13 C -0.010 4.010 14 C 0.148 3.852 15 H 0.080 0.920 16 C 0.134 3.866 17 N -0.616 5.616 18 C -0.245 4.245 19 H 0.087 0.913 20 C -0.061 4.061 21 N -0.949 5.949 22 Si 0.981 3.019 23 H -0.291 1.291 24 H -0.263 1.263 25 H -0.292 1.292 26 C 0.159 3.841 27 C 0.084 3.916 28 H 0.089 0.911 29 O -0.572 6.572 30 H 0.089 0.911 31 H 0.097 0.903 32 H 0.077 0.923 33 H 0.184 0.816 34 H 0.220 0.780 35 H 0.254 0.746 36 H 0.196 0.804 37 H 0.147 0.853 38 H 0.060 0.940 39 H 0.018 0.982 40 H 0.250 0.750 41 H -0.003 1.003 42 H 0.052 0.948 43 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.095 21.138 -1.135 24.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.319 5.319 3 C 0.353 3.647 4 O -0.462 6.462 5 C -0.154 4.154 6 C -0.141 4.141 7 C -0.059 4.059 8 N -0.044 5.044 9 C -0.110 4.110 10 N -0.209 5.209 11 C -0.161 4.161 12 C -0.141 4.141 13 C -0.031 4.031 14 C 0.043 3.957 15 H 0.098 0.902 16 C 0.008 3.992 17 N -0.344 5.344 18 C -0.373 4.373 19 H 0.105 0.895 20 C -0.255 4.255 21 N -0.597 5.597 22 Si 0.809 3.191 23 H -0.218 1.218 24 H -0.187 1.187 25 H -0.219 1.219 26 C 0.033 3.967 27 C 0.023 3.977 28 H 0.106 0.894 29 O -0.379 6.379 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.201 0.799 34 H 0.236 0.764 35 H 0.270 0.730 36 H 0.213 0.787 37 H 0.165 0.835 38 H 0.078 0.922 39 H 0.036 0.964 40 H 0.059 0.941 41 H 0.015 0.985 42 H 0.070 0.930 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -11.461 22.197 -0.921 24.998 hybrid contribution 0.492 -2.565 0.169 2.617 sum -10.970 19.632 -0.752 22.501 Atomic orbital electron populations 1.22425 0.76914 1.04575 1.03848 1.47642 1.08493 1.04043 1.71758 1.18459 0.86492 0.84227 0.75528 1.90802 1.15796 1.87804 1.51839 1.20770 0.97919 0.93254 1.03421 1.22337 0.92650 0.98513 1.00612 1.22220 1.01873 0.85739 0.96100 1.43178 1.17227 1.13009 1.31003 1.25820 1.03163 0.80767 1.01255 1.70006 1.04250 1.32181 1.14417 1.23099 1.00367 0.88676 1.03962 1.19517 0.91828 0.98349 1.04392 1.20820 0.97935 0.88605 0.95770 1.21700 0.97011 0.82717 0.94298 0.90213 1.21620 0.99217 0.84329 0.94035 1.44537 1.81292 1.02155 1.06379 1.19431 1.35120 0.84589 0.98164 0.89527 1.25719 1.00618 1.00060 0.99083 1.70133 1.45994 1.20312 1.23289 0.85036 0.78084 0.78615 0.77384 1.21820 1.18713 1.21885 1.21823 0.96877 0.93181 0.84809 1.23491 0.94852 0.94258 0.85056 0.89351 1.86428 1.63826 1.65581 1.22043 0.89311 0.88506 0.90481 0.79943 0.76385 0.73032 0.78746 0.83543 0.92183 0.96445 0.94092 0.98479 0.92956 0.75591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.17 7.68 127.77 0.98 2.15 16 2 N -0.59 -16.94 2.89 -819.93 -2.37 -19.30 16 3 C 0.56 17.39 7.36 86.63 0.64 18.03 16 4 O -0.58 -23.55 16.32 -4.15 -0.07 -23.62 16 5 C -0.15 -3.33 5.30 -18.62 -0.10 -3.42 16 6 C -0.12 -1.61 7.77 23.54 0.18 -1.42 16 7 C 0.06 0.54 10.92 82.91 0.91 1.44 16 8 N -0.37 -5.53 2.94 -351.65 -1.03 -6.56 16 9 C 0.17 2.22 12.70 180.17 2.29 4.51 16 10 N -0.49 -9.85 11.18 -197.89 -2.21 -12.06 16 11 C -0.01 -0.11 12.03 84.55 1.02 0.91 16 12 C -0.03 -0.65 6.77 38.71 0.26 -0.39 16 13 C -0.01 -0.23 9.76 22.86 0.22 -0.01 16 14 C 0.15 5.52 3.08 46.18 0.14 5.66 16 15 H 0.08 3.56 7.00 -2.38 -0.02 3.54 16 16 C 0.13 5.44 6.88 86.73 0.60 6.03 16 17 N -0.62 -30.57 3.39 -691.55 -2.35 -32.91 16 18 C -0.24 -13.11 10.24 84.03 0.86 -12.25 16 19 H 0.09 4.39 7.84 -2.91 -0.02 4.37 16 20 C -0.06 -3.35 5.41 84.86 0.46 -2.89 16 21 N -0.95 -55.45 10.67 21.65 0.23 -55.22 16 22 Si 0.98 43.82 29.56 68.60 2.03 45.84 16 23 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 24 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 26 C 0.16 7.64 5.16 86.94 0.45 8.09 16 27 C 0.08 3.10 3.96 32.07 0.13 3.23 16 28 H 0.09 2.82 6.16 -2.39 -0.01 2.81 16 29 O -0.57 -20.19 13.47 -148.98 -2.01 -22.20 16 30 H 0.09 1.17 6.74 -2.39 -0.02 1.16 16 31 H 0.10 1.35 5.96 -2.39 -0.01 1.33 16 32 H 0.08 1.54 6.14 -2.39 -0.01 1.52 16 33 H 0.18 1.54 5.56 -2.91 -0.02 1.52 16 34 H 0.22 -0.17 8.06 -2.92 -0.02 -0.19 16 35 H 0.25 0.87 8.06 -2.91 -0.02 0.85 16 36 H 0.20 3.02 8.06 -2.91 -0.02 2.99 16 37 H 0.15 3.36 8.06 -2.91 -0.02 3.34 16 38 H 0.06 2.11 7.06 -2.39 -0.02 2.09 16 39 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 41 H 0.00 -0.16 8.07 -2.39 -0.02 -0.18 16 42 H 0.05 2.71 6.93 -2.38 -0.02 2.70 16 43 H 0.39 10.36 9.12 -74.05 -0.68 9.69 16 Total: -1.00 -81.28 352.03 1.65 -79.63 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: 0.39 Total: 16.74 kcal Atomic # 6 Polarization: 20.63 SS G_CDS: 9.03 Total: 29.66 kcal Atomic # 7 Polarization: -118.34 SS G_CDS: -7.73 Total: -126.06 kcal Atomic # 8 Polarization: -43.74 SS G_CDS: -2.07 Total: -45.82 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -81.28 1.65 -79.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047446964.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.217 kcal (2) G-P(sol) polarization free energy of solvation -81.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds