Wall clock time and date at job start Tue Mar 31 2020 06:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 120.00199 * 2 1 4 4 O 1.21588 * 120.00426 * 187.31587 * 3 2 1 5 5 C 1.47654 * 119.99752 * 7.32582 * 3 2 1 6 6 C 1.41769 * 120.37844 * 19.97052 * 5 3 2 7 7 C 1.34537 * 120.15640 * 179.97438 * 6 5 3 8 8 N 1.36721 * 120.94859 * 0.02562 * 7 6 5 9 9 C 1.36435 * 132.26366 * 179.97438 * 8 7 6 10 10 C 1.35451 * 107.22250 * 180.02562 * 9 8 7 11 11 N 1.33188 * 108.61936 * 359.97438 * 10 9 8 12 12 C 1.32647 * 109.12362 * 0.02562 * 11 10 9 13 13 C 1.38441 * 120.36827 * 199.70086 * 5 3 2 14 14 C 1.46496 * 120.00197 * 180.02562 * 2 1 3 15 15 H 1.09000 * 110.78322 * 183.24227 * 14 2 1 16 16 C 1.54332 * 110.71793 * 306.47742 * 14 2 1 17 17 N 1.47017 * 107.27207 * 140.55617 * 16 14 2 18 18 C 1.36937 * 125.65097 * 181.09873 * 17 16 14 19 19 H 1.08007 * 119.99635 * 359.97438 * 18 17 16 20 20 C 1.38812 * 120.00293 * 179.97438 * 18 17 16 21 21 N 1.31614 * 119.99861 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99865 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47200 * 90.00188 * 22 20 18 24 24 H 1.48499 * 109.47234 * 209.99671 * 22 20 18 25 25 H 1.48494 * 109.47487 * 329.99978 * 22 20 18 26 26 C 1.47433 * 108.70564 * 1.05613 * 17 16 14 27 27 C 1.54909 * 104.82822 * 335.87443 * 26 17 16 28 28 H 1.08995 * 111.00460 * 278.88988 * 27 26 17 29 29 O 1.42908 * 111.00052 * 155.07717 * 27 26 17 30 30 H 1.08997 * 109.47143 * 267.06556 * 1 2 3 31 31 H 1.08998 * 109.46914 * 27.06224 * 1 2 3 32 32 H 1.08993 * 109.47088 * 147.06128 * 1 2 3 33 33 H 1.08009 * 119.91895 * 0.02562 * 6 5 3 34 34 H 1.08003 * 119.52748 * 180.02562 * 7 6 5 35 35 H 1.08000 * 126.39287 * 359.95954 * 9 8 7 36 36 H 1.08001 * 125.69201 * 180.02562 * 10 9 8 37 37 H 1.08001 * 120.46018 * 359.97438 * 13 5 3 38 38 H 1.09002 * 109.87772 * 21.13655 * 16 14 2 39 39 H 1.08999 * 110.01009 * 260.04614 * 16 14 2 40 40 H 0.97005 * 120.00165 * 180.02562 * 21 20 18 41 41 H 1.08994 * 110.36688 * 217.03235 * 26 17 16 42 42 H 1.09001 * 110.35957 * 94.70787 * 26 17 16 43 43 H 0.96705 * 113.99471 * 61.45750 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3474 1.1715 -0.1341 5 6 1.4097 2.4407 0.1631 6 6 0.1103 2.4553 0.7298 7 6 -0.5499 3.6183 0.8768 8 7 0.0134 4.8009 0.4854 9 6 -0.4359 6.0886 0.5242 10 6 0.5394 6.8696 0.0012 11 7 1.5627 6.0933 -0.3512 12 6 1.2685 4.8313 -0.0677 13 6 1.9894 3.6346 -0.2307 14 6 2.1975 -1.2687 -0.0006 15 1 3.2720 -1.0949 0.0571 16 6 1.7273 -2.1711 1.1598 17 7 1.6778 -3.5487 0.6488 18 6 1.2873 -4.6508 1.3616 19 1 0.9812 -4.5468 2.3922 20 6 1.2848 -5.9017 0.7598 21 7 1.6574 -6.0284 -0.4962 22 14 0.7528 -7.4051 1.7325 23 1 -0.7109 -7.6024 1.5776 24 1 1.4700 -8.6023 1.2250 25 1 1.0763 -7.2059 3.1680 26 6 2.1171 -3.5472 -0.7586 27 6 1.8435 -2.1064 -1.2577 28 1 0.7958 -1.9797 -1.5301 29 8 2.6987 -1.7728 -2.3529 30 1 -0.3633 -0.0526 1.0263 31 1 -0.3633 0.9151 -0.4675 32 1 -0.3633 -0.8624 -0.5587 33 1 -0.3504 1.5306 1.0451 34 1 -1.5392 3.6177 1.3102 35 1 -1.3914 6.4228 0.9007 36 1 0.4950 7.9429 -0.1106 37 1 2.9802 3.6466 -0.6604 38 1 0.7357 -1.8626 1.4909 39 1 2.4312 -2.1087 1.9897 40 1 1.6553 -6.9024 -0.9169 41 1 1.5374 -4.2658 -1.3377 42 1 3.1809 -3.7757 -0.8240 43 1 2.5809 -2.3365 -3.1298 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047455713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:33 Heat of formation + Delta-G solvation = 78.277026 kcal Electronic energy + Delta-G solvation = -28117.435509 eV Core-core repulsion = 24166.717741 eV Total energy + Delta-G solvation = -3950.717768 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.10600 -40.31592 -38.11115 -37.13541 -35.36300 -34.88571 -33.85217 -32.07591 -30.71889 -29.34683 -28.57716 -27.46925 -26.89735 -25.04715 -23.99406 -23.30398 -22.11538 -20.67546 -20.56039 -19.16829 -18.22096 -18.01795 -17.16511 -16.79424 -16.47052 -16.23284 -15.85365 -15.25701 -14.96481 -14.77247 -14.64218 -14.31240 -13.94555 -13.82725 -13.72265 -13.24331 -13.14772 -12.83570 -12.52971 -12.32927 -12.09578 -11.80889 -11.58336 -11.46287 -11.31008 -11.15513 -11.00421 -10.88665 -10.44839 -10.24664 -10.02315 -9.92123 -9.77690 -9.32284 -9.16109 -8.79282 -8.50349 -8.14107 -7.00704 -5.78938 -3.22668 0.24123 0.77574 2.26345 2.42139 2.78122 2.89335 3.32025 3.37680 3.39840 3.42098 3.92143 4.08048 4.30685 4.34677 4.37563 4.62393 4.66726 4.93264 4.96730 5.12800 5.15127 5.18357 5.31995 5.35102 5.40437 5.50435 5.53108 5.61098 5.74384 5.76836 5.84652 6.01939 6.06719 6.09644 6.26818 6.38269 6.50843 6.67889 6.80527 7.27751 7.40061 7.47047 7.53276 7.65360 8.11034 8.15620 8.22460 9.05868 9.66543 10.28443 11.24768 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.027255 B = 0.002617 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.086690 B =10694.816295 C =11294.465738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.593 5.593 3 C 0.563 3.437 4 O -0.525 6.525 5 C -0.115 4.115 6 C -0.136 4.136 7 C 0.043 3.957 8 N -0.354 5.354 9 C -0.094 4.094 10 C 0.030 3.970 11 N -0.481 5.481 12 C 0.209 3.791 13 C -0.004 4.004 14 C 0.137 3.863 15 H 0.114 0.886 16 C 0.131 3.869 17 N -0.599 5.599 18 C -0.226 4.226 19 H 0.080 0.920 20 C -0.009 4.009 21 N -0.922 5.922 22 Si 0.918 3.082 23 H -0.288 1.288 24 H -0.289 1.289 25 H -0.281 1.281 26 C 0.127 3.873 27 C 0.064 3.936 28 H 0.060 0.940 29 O -0.562 6.562 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.179 0.821 34 H 0.169 0.831 35 H 0.184 0.816 36 H 0.183 0.817 37 H 0.164 0.836 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.254 0.746 41 H 0.112 0.888 42 H 0.026 0.974 43 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.986 19.788 0.580 21.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.324 5.324 3 C 0.351 3.649 4 O -0.401 6.401 5 C -0.125 4.125 6 C -0.156 4.156 7 C -0.078 4.078 8 N -0.026 5.026 9 C -0.227 4.227 10 C -0.123 4.123 11 N -0.201 5.201 12 C -0.033 4.033 13 C -0.025 4.025 14 C 0.034 3.966 15 H 0.132 0.868 16 C 0.004 3.996 17 N -0.326 5.326 18 C -0.354 4.354 19 H 0.098 0.902 20 C -0.205 4.205 21 N -0.570 5.570 22 Si 0.748 3.252 23 H -0.215 1.215 24 H -0.215 1.215 25 H -0.206 1.206 26 C 0.001 3.999 27 C 0.003 3.997 28 H 0.078 0.922 29 O -0.367 6.367 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.196 0.804 34 H 0.186 0.814 35 H 0.202 0.798 36 H 0.200 0.800 37 H 0.181 0.819 38 H 0.051 0.949 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.130 0.870 42 H 0.044 0.956 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -7.467 20.283 0.577 21.621 hybrid contribution -1.426 -1.423 0.557 2.090 sum -8.893 18.860 1.134 20.883 Atomic orbital electron populations 1.22398 0.80212 1.03805 1.01671 1.47575 1.06708 1.05676 1.72474 1.17890 0.86900 0.82959 0.77142 1.90818 1.13734 1.86745 1.48810 1.19965 0.95273 0.93869 1.03364 1.21937 0.94422 0.98940 1.00324 1.21537 1.00485 0.82868 1.02909 1.42909 1.14549 1.06804 1.38334 1.22786 1.03931 0.81414 1.14582 1.22605 0.89577 1.00229 0.99907 1.70701 1.27785 0.98430 1.23145 1.20783 0.84998 0.94614 1.02882 1.20698 0.99706 0.86561 0.95580 1.22211 0.98158 0.81122 0.95142 0.86834 1.21529 0.98312 0.85909 0.93807 1.44269 1.78011 1.01232 1.09114 1.19074 1.37081 0.84488 0.94708 0.90170 1.24813 1.01430 0.97645 0.96575 1.69742 1.53570 1.22652 1.11071 0.86027 0.78037 0.82227 0.78911 1.21498 1.21549 1.20631 1.22604 0.99251 0.91483 0.86520 1.23738 0.92400 0.97499 0.86058 0.92208 1.86465 1.64027 1.60277 1.25909 0.91568 0.90019 0.90107 0.80432 0.81422 0.79850 0.80024 0.81851 0.94948 0.94921 0.93507 0.86998 0.95626 0.77821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.66 7.41 59.85 0.44 1.10 16 2 N -0.59 -8.87 2.89 -173.02 -0.50 -9.37 16 3 C 0.56 8.87 7.53 -12.42 -0.09 8.78 16 4 O -0.52 -10.27 15.94 5.29 0.08 -10.19 16 5 C -0.12 -1.43 5.58 -104.63 -0.58 -2.02 16 6 C -0.14 -1.20 7.57 -39.54 -0.30 -1.50 16 7 C 0.04 0.33 10.91 -16.68 -0.18 0.15 16 8 N -0.35 -3.51 2.94 -62.75 -0.18 -3.70 16 9 C -0.09 -0.75 11.74 -16.50 -0.19 -0.95 16 10 C 0.03 0.29 11.83 -17.96 -0.21 0.07 16 11 N -0.48 -6.30 11.31 -12.80 -0.14 -6.44 16 12 C 0.21 2.64 7.79 -155.97 -1.22 1.43 16 13 C 0.00 -0.06 9.69 -38.59 -0.37 -0.43 16 14 C 0.14 2.53 3.08 -66.09 -0.20 2.32 16 15 H 0.11 2.38 7.05 -51.93 -0.37 2.01 16 16 C 0.13 2.61 6.87 -3.06 -0.02 2.59 16 17 N -0.60 -14.51 3.39 -170.06 -0.58 -15.09 16 18 C -0.23 -5.95 10.27 -15.06 -0.15 -6.11 16 19 H 0.08 2.03 7.83 -52.48 -0.41 1.62 16 20 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 21 N -0.92 -25.63 10.09 55.49 0.56 -25.07 16 22 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 23 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 26 C 0.13 2.95 5.62 -2.52 -0.01 2.93 16 27 C 0.06 1.20 3.98 -24.58 -0.10 1.11 16 28 H 0.06 1.06 6.37 -51.93 -0.33 0.73 16 29 O -0.56 -10.29 13.47 -35.23 -0.47 -10.76 16 30 H 0.07 0.58 6.53 -51.93 -0.34 0.24 16 31 H 0.08 0.69 5.32 -51.93 -0.28 0.41 16 32 H 0.08 0.94 6.38 -51.93 -0.33 0.61 16 33 H 0.18 1.21 4.05 -52.48 -0.21 1.00 16 34 H 0.17 0.63 8.06 -52.48 -0.42 0.20 16 35 H 0.18 0.75 8.06 -52.49 -0.42 0.32 16 36 H 0.18 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.16 2.16 7.79 -52.49 -0.41 1.75 16 38 H 0.03 0.59 6.64 -51.93 -0.34 0.25 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 41 H 0.11 2.85 5.87 -51.93 -0.30 2.54 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.38 5.33 9.11 45.56 0.42 5.75 16 LS Contribution 347.98 15.07 5.24 5.24 Total: -1.00 -35.02 347.98 -8.47 -43.49 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -4.16 Total: 6.64 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: -3.30 Total: 9.14 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.85 Total: -59.67 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.39 Total: -20.95 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.02 -8.47 -43.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047455713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.770 kcal (2) G-P(sol) polarization free energy of solvation -35.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds