Wall clock time and date at job start Tue Mar 31 2020 06:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 120.00199 * 2 1 4 4 O 1.21588 * 120.00426 * 187.31587 * 3 2 1 5 5 C 1.47654 * 119.99752 * 7.32582 * 3 2 1 6 6 C 1.41769 * 120.37844 * 19.97052 * 5 3 2 7 7 C 1.34537 * 120.15640 * 179.97438 * 6 5 3 8 8 N 1.36721 * 120.94859 * 0.02562 * 7 6 5 9 9 C 1.36435 * 132.26366 * 179.97438 * 8 7 6 10 10 C 1.35451 * 107.22250 * 180.02562 * 9 8 7 11 11 N 1.33188 * 108.61936 * 359.97438 * 10 9 8 12 12 C 1.32647 * 109.12362 * 0.02562 * 11 10 9 13 13 C 1.38441 * 120.36827 * 199.70086 * 5 3 2 14 14 C 1.46496 * 120.00197 * 180.02562 * 2 1 3 15 15 H 1.09000 * 110.78322 * 183.24227 * 14 2 1 16 16 C 1.54332 * 110.71793 * 306.47742 * 14 2 1 17 17 N 1.47017 * 107.27207 * 140.55617 * 16 14 2 18 18 C 1.36937 * 125.65097 * 181.09873 * 17 16 14 19 19 H 1.08007 * 119.99635 * 359.97438 * 18 17 16 20 20 C 1.38812 * 120.00293 * 179.97438 * 18 17 16 21 21 N 1.31614 * 119.99861 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99865 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47200 * 90.00188 * 22 20 18 24 24 H 1.48499 * 109.47234 * 209.99671 * 22 20 18 25 25 H 1.48494 * 109.47487 * 329.99978 * 22 20 18 26 26 C 1.47433 * 108.70564 * 1.05613 * 17 16 14 27 27 C 1.54909 * 104.82822 * 335.87443 * 26 17 16 28 28 H 1.08995 * 111.00460 * 278.88988 * 27 26 17 29 29 O 1.42908 * 111.00052 * 155.07717 * 27 26 17 30 30 H 1.08997 * 109.47143 * 267.06556 * 1 2 3 31 31 H 1.08998 * 109.46914 * 27.06224 * 1 2 3 32 32 H 1.08993 * 109.47088 * 147.06128 * 1 2 3 33 33 H 1.08009 * 119.91895 * 0.02562 * 6 5 3 34 34 H 1.08003 * 119.52748 * 180.02562 * 7 6 5 35 35 H 1.08000 * 126.39287 * 359.95954 * 9 8 7 36 36 H 1.08001 * 125.69201 * 180.02562 * 10 9 8 37 37 H 1.08001 * 120.46018 * 359.97438 * 13 5 3 38 38 H 1.09002 * 109.87772 * 21.13655 * 16 14 2 39 39 H 1.08999 * 110.01009 * 260.04614 * 16 14 2 40 40 H 0.97005 * 120.00165 * 180.02562 * 21 20 18 41 41 H 1.08994 * 110.36688 * 217.03235 * 26 17 16 42 42 H 1.09001 * 110.35957 * 94.70787 * 26 17 16 43 43 H 0.96705 * 113.99471 * 61.45750 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3474 1.1715 -0.1341 5 6 1.4097 2.4407 0.1631 6 6 0.1103 2.4553 0.7298 7 6 -0.5499 3.6183 0.8768 8 7 0.0134 4.8009 0.4854 9 6 -0.4359 6.0886 0.5242 10 6 0.5394 6.8696 0.0012 11 7 1.5627 6.0933 -0.3512 12 6 1.2685 4.8313 -0.0677 13 6 1.9894 3.6346 -0.2307 14 6 2.1975 -1.2687 -0.0006 15 1 3.2720 -1.0949 0.0571 16 6 1.7273 -2.1711 1.1598 17 7 1.6778 -3.5487 0.6488 18 6 1.2873 -4.6508 1.3616 19 1 0.9812 -4.5468 2.3922 20 6 1.2848 -5.9017 0.7598 21 7 1.6574 -6.0284 -0.4962 22 14 0.7528 -7.4051 1.7325 23 1 -0.7109 -7.6024 1.5776 24 1 1.4700 -8.6023 1.2250 25 1 1.0763 -7.2059 3.1680 26 6 2.1171 -3.5472 -0.7586 27 6 1.8435 -2.1064 -1.2577 28 1 0.7958 -1.9797 -1.5301 29 8 2.6987 -1.7728 -2.3529 30 1 -0.3633 -0.0526 1.0263 31 1 -0.3633 0.9151 -0.4675 32 1 -0.3633 -0.8624 -0.5587 33 1 -0.3504 1.5306 1.0451 34 1 -1.5392 3.6177 1.3102 35 1 -1.3914 6.4228 0.9007 36 1 0.4950 7.9429 -0.1106 37 1 2.9802 3.6466 -0.6604 38 1 0.7357 -1.8626 1.4909 39 1 2.4312 -2.1087 1.9897 40 1 1.6553 -6.9024 -0.9169 41 1 1.5374 -4.2658 -1.3377 42 1 3.1809 -3.7757 -0.8240 43 1 2.5809 -2.3365 -3.1298 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047455713.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:33 Heat of formation + Delta-G solvation = 52.587743 kcal Electronic energy + Delta-G solvation = -28118.549480 eV Core-core repulsion = 24166.717741 eV Total energy + Delta-G solvation = -3951.831739 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.83645 -41.54083 -39.58216 -38.05974 -36.76890 -36.45096 -34.71202 -33.84096 -31.64636 -30.45903 -29.87975 -28.96910 -28.05537 -26.57377 -25.21304 -24.12418 -22.81538 -22.36864 -21.94033 -20.45390 -19.17372 -19.06027 -18.80526 -18.15715 -17.52793 -17.31471 -16.94805 -16.64065 -16.26926 -15.86612 -15.60972 -15.44519 -15.24438 -15.03753 -14.77046 -14.53276 -14.49667 -14.11972 -13.85581 -13.53606 -13.27333 -13.18637 -13.04439 -12.94612 -12.72811 -12.65972 -12.31859 -12.07568 -11.99997 -11.91245 -11.49330 -11.23637 -11.16802 -10.92751 -10.75403 -9.87509 -9.76832 -8.96482 -8.88339 -7.79983 -5.26768 -0.61648 0.07040 1.49524 1.51520 1.53873 1.59830 1.61594 1.70244 1.96255 2.47505 2.51411 3.03005 3.13894 3.32439 3.39882 3.51083 3.66989 3.73067 3.81020 3.97252 4.01283 4.10947 4.22367 4.32123 4.42109 4.46527 4.49201 4.53486 4.58816 4.66591 4.81293 4.85266 4.89950 4.95387 5.01125 5.35055 5.37018 5.44242 5.47521 5.60023 5.67881 6.03037 6.20844 6.25443 6.81278 6.82865 6.95396 7.04849 7.70263 8.32558 9.21883 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.027255 B = 0.002617 C = 0.002478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.086690 B =10694.816295 C =11294.465738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.589 5.589 3 C 0.559 3.441 4 O -0.578 6.578 5 C -0.116 4.116 6 C -0.145 4.145 7 C 0.065 3.935 8 N -0.358 5.358 9 C -0.069 4.069 10 C 0.010 3.990 11 N -0.523 5.523 12 C 0.178 3.822 13 C -0.026 4.026 14 C 0.147 3.853 15 H 0.080 0.920 16 C 0.135 3.865 17 N -0.617 5.617 18 C -0.237 4.237 19 H 0.089 0.911 20 C -0.064 4.064 21 N -0.950 5.950 22 Si 0.983 3.017 23 H -0.280 1.280 24 H -0.299 1.299 25 H -0.271 1.271 26 C 0.135 3.865 27 C 0.082 3.918 28 H 0.083 0.917 29 O -0.573 6.573 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.204 0.796 34 H 0.222 0.778 35 H 0.233 0.767 36 H 0.210 0.790 37 H 0.140 0.860 38 H 0.063 0.937 39 H 0.024 0.976 40 H 0.249 0.751 41 H 0.090 0.910 42 H -0.013 1.013 43 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.203 21.563 2.216 25.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.319 5.319 3 C 0.349 3.651 4 O -0.458 6.458 5 C -0.125 4.125 6 C -0.164 4.164 7 C -0.055 4.055 8 N -0.030 5.030 9 C -0.202 4.202 10 C -0.142 4.142 11 N -0.244 5.244 12 C -0.062 4.062 13 C -0.048 4.048 14 C 0.042 3.958 15 H 0.099 0.901 16 C 0.009 3.991 17 N -0.345 5.345 18 C -0.366 4.366 19 H 0.107 0.893 20 C -0.257 4.257 21 N -0.599 5.599 22 Si 0.811 3.189 23 H -0.206 1.206 24 H -0.225 1.225 25 H -0.196 1.196 26 C 0.009 3.991 27 C 0.021 3.979 28 H 0.100 0.900 29 O -0.380 6.380 30 H 0.115 0.885 31 H 0.129 0.871 32 H 0.094 0.906 33 H 0.220 0.780 34 H 0.239 0.761 35 H 0.249 0.751 36 H 0.226 0.774 37 H 0.157 0.843 38 H 0.081 0.919 39 H 0.042 0.958 40 H 0.059 0.941 41 H 0.108 0.892 42 H 0.005 0.995 43 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -11.725 22.084 2.217 25.101 hybrid contribution -0.120 -1.830 0.051 1.835 sum -11.845 20.254 2.268 23.572 Atomic orbital electron populations 1.22819 0.77058 1.05159 1.03977 1.47558 1.08464 1.03970 1.71909 1.18468 0.86498 0.84147 0.76000 1.90786 1.16239 1.87545 1.51211 1.19716 0.96800 0.91422 1.04526 1.22106 0.92757 1.00797 1.00779 1.22346 1.01654 0.81319 1.00157 1.43198 1.13674 1.08286 1.37856 1.23587 1.04715 0.80105 1.11784 1.23267 0.89244 1.01671 1.00033 1.70632 1.29971 0.99377 1.24408 1.20613 0.86625 0.94180 1.04813 1.20523 0.99386 0.87701 0.97144 1.21755 0.96933 0.82635 0.94444 0.90148 1.21607 0.99557 0.84138 0.93848 1.44509 1.77816 1.02558 1.09573 1.19466 1.36441 0.85378 0.95283 0.89329 1.25644 1.02078 1.00385 0.97573 1.69973 1.54783 1.22696 1.12447 0.85012 0.77651 0.78335 0.77897 1.20642 1.22529 1.19622 1.22350 0.96351 0.93883 0.86531 1.23494 0.93471 0.94532 0.86362 0.89966 1.86445 1.64282 1.60747 1.26538 0.88471 0.87119 0.90602 0.77952 0.76145 0.75078 0.77368 0.84255 0.91918 0.95752 0.94149 0.89234 0.99523 0.75816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.90 7.41 127.77 0.95 1.84 16 2 N -0.59 -17.06 2.89 -819.58 -2.36 -19.43 16 3 C 0.56 17.88 7.53 86.73 0.65 18.53 16 4 O -0.58 -24.13 15.94 -3.99 -0.06 -24.20 16 5 C -0.12 -2.79 5.58 -19.87 -0.11 -2.90 16 6 C -0.14 -2.01 7.57 22.29 0.17 -1.84 16 7 C 0.07 0.65 10.91 83.08 0.91 1.56 16 8 N -0.36 -5.82 2.94 -352.44 -1.04 -6.85 16 9 C -0.07 -0.80 11.74 83.33 0.98 0.18 16 10 C 0.01 0.17 11.83 83.84 0.99 1.16 16 11 N -0.52 -13.57 11.31 -194.40 -2.20 -15.77 16 12 C 0.18 4.42 7.79 133.97 1.04 5.47 16 13 C -0.03 -0.70 9.69 22.91 0.22 -0.48 16 14 C 0.15 5.50 3.08 46.18 0.14 5.64 16 15 H 0.08 3.57 7.05 -2.39 -0.02 3.55 16 16 C 0.13 5.29 6.87 86.73 0.60 5.89 16 17 N -0.62 -30.22 3.39 -691.96 -2.35 -32.56 16 18 C -0.24 -12.52 10.27 84.03 0.86 -11.65 16 19 H 0.09 4.41 7.83 -2.91 -0.02 4.38 16 20 C -0.06 -3.46 5.49 84.86 0.47 -3.00 16 21 N -0.95 -54.13 10.09 21.65 0.22 -53.91 16 22 Si 0.98 43.45 29.55 68.60 2.03 45.48 16 23 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 24 H -0.30 -13.53 7.11 99.48 0.71 -12.83 16 25 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 26 C 0.14 6.49 5.62 86.85 0.49 6.98 16 27 C 0.08 3.13 3.98 31.99 0.13 3.26 16 28 H 0.08 2.80 6.37 -2.39 -0.02 2.79 16 29 O -0.57 -21.40 13.47 -148.98 -2.01 -23.41 16 30 H 0.10 1.19 6.53 -2.39 -0.02 1.17 16 31 H 0.11 1.40 5.32 -2.39 -0.01 1.39 16 32 H 0.08 1.50 6.38 -2.39 -0.02 1.48 16 33 H 0.20 1.68 4.05 -2.91 -0.01 1.67 16 34 H 0.22 -0.13 8.06 -2.91 -0.02 -0.15 16 35 H 0.23 0.26 8.06 -2.91 -0.02 0.24 16 36 H 0.21 1.91 8.06 -2.91 -0.02 1.88 16 37 H 0.14 4.22 7.79 -2.91 -0.02 4.20 16 38 H 0.06 2.11 6.64 -2.39 -0.02 2.10 16 39 H 0.02 1.00 8.14 -2.39 -0.02 0.99 16 40 H 0.25 13.82 8.31 -92.70 -0.77 13.05 16 41 H 0.09 4.73 5.87 -2.39 -0.01 4.71 16 42 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 43 H 0.39 11.33 9.11 -74.05 -0.67 10.65 16 Total: -1.00 -82.57 347.98 1.11 -81.46 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: 0.40 Total: 18.56 kcal Atomic # 6 Polarization: 22.15 SS G_CDS: 8.48 Total: 30.64 kcal Atomic # 7 Polarization: -120.80 SS G_CDS: -7.73 Total: -128.53 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -2.07 Total: -47.61 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -82.57 1.11 -81.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047455713.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.049 kcal (2) G-P(sol) polarization free energy of solvation -82.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds