Wall clock time and date at job start Tue Mar 31 2020 06:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34775 * 120.00400 * 2 1 4 4 O 1.21766 * 120.00452 * 185.38843 * 3 2 1 5 5 C 1.46300 * 119.99940 * 5.39683 * 3 2 1 6 6 N 1.32513 * 125.56346 * 6.26601 * 5 3 2 7 7 C 1.32021 * 109.86701 * 180.02562 * 6 5 3 8 8 C 1.39364 * 107.93358 * 0.02562 * 7 6 5 9 9 C 1.40414 * 133.41771 * 180.02562 * 8 7 6 10 10 C 1.36333 * 119.19151 * 179.97438 * 9 8 7 11 11 C 1.40324 * 119.58481 * 359.97438 * 10 9 8 12 12 C 1.35163 * 120.39798 * 0.02562 * 11 10 9 13 13 N 1.36182 * 120.59746 * 359.67078 * 12 11 10 14 14 C 1.46502 * 119.99978 * 180.02562 * 2 1 3 15 15 H 1.08999 * 110.64600 * 178.31163 * 14 2 1 16 16 C 1.54326 * 110.71645 * 301.45459 * 14 2 1 17 17 N 1.47020 * 107.27141 * 140.73657 * 16 14 2 18 18 C 1.36939 * 125.64976 * 181.02368 * 17 16 14 19 19 H 1.08002 * 119.99911 * 9.76290 * 18 17 16 20 20 C 1.38805 * 120.00245 * 189.76535 * 18 17 16 21 21 N 1.31618 * 120.00189 * 8.30221 * 20 18 17 22 22 Si 1.86798 * 120.00115 * 188.30048 * 20 18 17 23 23 H 1.48509 * 109.47181 * 265.00952 * 22 20 18 24 24 H 1.48498 * 109.47316 * 145.01138 * 22 20 18 25 25 H 1.48504 * 109.47279 * 25.00567 * 22 20 18 26 26 C 1.47423 * 108.70472 * 1.27987 * 17 16 14 27 27 C 1.55123 * 104.72187 * 335.55853 * 26 17 16 28 28 H 1.08998 * 111.19406 * 279.18783 * 27 26 17 29 29 O 1.42906 * 110.94077 * 155.28862 * 27 26 17 30 30 H 1.09003 * 109.47147 * 275.36205 * 1 2 3 31 31 H 1.09008 * 109.47415 * 35.35638 * 1 2 3 32 32 H 1.08994 * 109.47557 * 155.35733 * 1 2 3 33 33 H 1.08001 * 126.03174 * 179.97438 * 7 6 5 34 34 H 1.07997 * 120.40566 * 0.02562 * 9 8 7 35 35 H 1.07994 * 120.20207 * 180.02562 * 10 9 8 36 36 H 1.07997 * 119.79758 * 180.02562 * 11 10 9 37 37 H 1.07996 * 119.70062 * 179.97438 * 12 11 10 38 38 H 1.08992 * 109.88407 * 21.31198 * 16 14 2 39 39 H 1.09001 * 109.88065 * 260.14943 * 16 14 2 40 40 H 0.96996 * 120.00361 * 180.02562 * 21 20 18 41 41 H 1.08998 * 110.36233 * 94.48604 * 26 17 16 42 42 H 1.08997 * 110.36928 * 216.80861 * 26 17 16 43 43 H 0.96691 * 113.99982 * 67.95278 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3525 1.1695 -0.0990 5 6 1.4123 2.4314 0.1192 6 7 0.1132 2.5549 0.3495 7 6 -0.2144 3.8330 0.3969 8 6 0.9422 4.5807 0.1840 9 6 1.2032 5.9591 0.1260 10 6 2.4774 6.3855 -0.1048 11 6 3.5024 5.4431 -0.2792 12 6 3.2323 4.1200 -0.2200 13 7 1.9650 3.6811 0.0160 14 6 2.1974 -1.2687 -0.0006 15 1 3.2726 -1.0918 -0.0305 16 6 1.8181 -2.1187 1.2304 17 7 1.7365 -3.5179 0.7864 18 6 1.4057 -4.5874 1.5750 19 1 1.0255 -4.4256 2.5728 20 6 1.5591 -5.8797 1.0919 21 7 2.1719 -6.0853 -0.0546 22 14 0.8958 -7.3270 2.0690 23 1 1.9791 -7.8929 2.9125 24 1 0.4001 -8.3694 1.1348 25 1 -0.2191 -6.8692 2.9367 26 6 2.0757 -3.5796 -0.6469 27 6 1.7548 -2.1622 -1.1894 28 1 0.6892 -2.0483 -1.3881 29 8 2.5245 -1.8766 -2.3591 30 1 -0.3633 0.0960 1.0232 31 1 -0.3634 0.8382 -0.5947 32 1 -0.3634 -0.9340 -0.4285 33 1 -1.2043 4.2290 0.5694 34 1 0.4045 6.6729 0.2633 35 1 2.6966 7.4419 -0.1523 36 1 4.5131 5.7770 -0.4618 37 1 4.0297 3.4045 -0.3562 38 1 0.8526 -1.7964 1.6201 39 1 2.5831 -2.0182 2.0003 40 1 2.2787 -6.9882 -0.3924 41 1 3.1337 -3.8074 -0.7768 42 1 1.4615 -4.3261 -1.1504 43 1 2.2837 -2.4106 -3.1284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047457116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:47 Heat of formation + Delta-G solvation = 59.369454 kcal Electronic energy + Delta-G solvation = -28326.393208 eV Core-core repulsion = 24374.855546 eV Total energy + Delta-G solvation = -3951.537662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.10740 -39.75354 -37.89013 -37.61963 -35.22462 -34.77012 -33.58790 -32.00791 -31.18776 -29.18721 -28.16601 -27.30049 -26.47430 -24.77137 -24.14670 -23.41304 -22.41924 -20.78183 -20.49631 -19.13601 -17.73281 -17.35854 -17.00737 -16.91946 -16.45539 -16.35133 -15.79729 -15.60260 -15.06385 -14.74744 -14.69661 -14.26002 -13.87525 -13.67151 -13.11938 -13.00787 -12.73842 -12.66542 -12.48015 -12.16398 -12.13579 -11.96726 -11.79084 -11.50120 -11.20971 -11.07335 -10.88869 -10.83470 -10.38401 -10.15011 -9.98979 -9.95112 -9.78967 -9.60991 -9.26731 -8.66716 -8.38002 -7.75092 -6.88859 -5.79145 -3.14284 0.46590 0.62332 2.08256 2.20476 3.07891 3.22214 3.37888 3.39615 3.43708 3.45725 4.15562 4.16450 4.37462 4.44245 4.53209 4.58385 4.65221 4.70157 5.07127 5.32173 5.33121 5.40218 5.46333 5.48374 5.56468 5.65417 5.70234 5.81649 5.88149 5.92160 6.05363 6.13816 6.15960 6.19315 6.34458 6.55333 6.62612 6.73694 6.89464 7.30213 7.40802 7.47921 7.58247 7.70233 8.12715 8.20010 8.23346 9.11991 9.73304 10.38398 11.33024 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.027183 B = 0.002731 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.808415 B =10250.637815 C =10635.302816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.575 5.575 3 C 0.606 3.394 4 O -0.548 6.548 5 C 0.096 3.904 6 N -0.397 5.397 7 C -0.017 4.017 8 C 0.018 3.982 9 C -0.083 4.083 10 C -0.112 4.112 11 C -0.138 4.138 12 C 0.068 3.932 13 N -0.321 5.321 14 C 0.139 3.861 15 H 0.113 0.887 16 C 0.131 3.869 17 N -0.598 5.598 18 C -0.230 4.230 19 H 0.079 0.921 20 C -0.006 4.006 21 N -0.919 5.919 22 Si 0.914 3.086 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.280 1.280 26 C 0.151 3.849 27 C 0.062 3.938 28 H 0.063 0.937 29 O -0.562 6.562 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.188 0.812 34 H 0.150 0.850 35 H 0.140 0.860 36 H 0.153 0.847 37 H 0.179 0.821 38 H 0.036 0.964 39 H 0.032 0.968 40 H 0.254 0.746 41 H 0.039 0.961 42 H 0.077 0.923 43 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.172 24.838 -2.906 25.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.304 5.304 3 C 0.392 3.608 4 O -0.427 6.427 5 C -0.153 4.153 6 N -0.114 5.114 7 C -0.179 4.179 8 C -0.094 4.094 9 C -0.103 4.103 10 C -0.134 4.134 11 C -0.158 4.158 12 C -0.055 4.055 13 N 0.010 4.990 14 C 0.035 3.965 15 H 0.131 0.869 16 C 0.004 3.996 17 N -0.326 5.326 18 C -0.358 4.358 19 H 0.097 0.903 20 C -0.203 4.203 21 N -0.566 5.566 22 Si 0.744 3.256 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.025 3.975 27 C 0.002 3.998 28 H 0.081 0.919 29 O -0.367 6.367 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.205 0.795 34 H 0.168 0.832 35 H 0.158 0.842 36 H 0.170 0.830 37 H 0.196 0.804 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.064 0.936 41 H 0.057 0.943 42 H 0.096 0.904 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -2.672 24.119 -2.473 24.392 hybrid contribution -0.069 -0.472 0.082 0.484 sum -2.740 23.647 -2.390 23.925 Atomic orbital electron populations 1.22049 0.78087 1.03010 1.02951 1.47396 1.07866 1.04635 1.70547 1.16129 0.85780 0.81408 0.77461 1.90817 1.12927 1.86735 1.52178 1.22396 0.89163 0.85222 1.18514 1.70234 1.08996 1.19941 1.12191 1.22806 0.97657 0.87802 1.09619 1.20040 0.89602 0.91040 1.08727 1.20555 0.98141 0.91497 1.00064 1.21177 0.92324 1.00486 0.99373 1.20977 1.01288 0.90955 1.02610 1.22131 0.85729 0.97524 1.00108 1.42410 1.07627 1.07447 1.41492 1.22209 0.98095 0.80889 0.95266 0.86870 1.21559 0.98709 0.85874 0.93463 1.44271 1.81517 1.00869 1.05911 1.19042 1.35898 0.83719 0.97127 0.90294 1.24851 1.00216 0.97359 0.97865 1.69931 1.45738 1.20229 1.20677 0.86078 0.78534 0.82181 0.78816 1.21541 1.21578 1.20499 1.22085 0.99902 0.90712 0.84844 1.23801 0.93701 0.97541 0.84792 0.91881 1.86453 1.63439 1.65254 1.21514 0.91901 0.89524 0.91074 0.79475 0.83201 0.84203 0.82985 0.80382 0.94634 0.94966 0.93569 0.94325 0.90432 0.77899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 8.01 59.84 0.48 1.71 16 2 N -0.57 -10.21 2.89 -173.50 -0.50 -10.71 16 3 C 0.61 10.95 7.63 -13.02 -0.10 10.85 16 4 O -0.55 -11.01 14.74 5.13 0.08 -10.93 16 5 C 0.10 1.49 7.47 -153.90 -1.15 0.35 16 6 N -0.40 -5.56 7.79 -10.62 -0.08 -5.65 16 7 C -0.02 -0.19 12.00 -17.05 -0.20 -0.39 16 8 C 0.02 0.19 6.80 -84.21 -0.57 -0.38 16 9 C -0.08 -0.61 10.11 -39.45 -0.40 -1.01 16 10 C -0.11 -0.72 10.08 -39.48 -0.40 -1.12 16 11 C -0.14 -1.06 9.98 -39.89 -0.40 -1.45 16 12 C 0.07 0.76 10.52 -16.71 -0.18 0.58 16 13 N -0.32 -4.27 2.95 -58.89 -0.17 -4.44 16 14 C 0.14 2.79 3.08 -66.09 -0.20 2.59 16 15 H 0.11 2.51 7.00 -51.93 -0.36 2.15 16 16 C 0.13 2.86 6.88 -3.06 -0.02 2.84 16 17 N -0.60 -15.32 3.39 -169.94 -0.58 -15.90 16 18 C -0.23 -6.36 10.24 -15.06 -0.15 -6.52 16 19 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 20 C -0.01 -0.17 5.42 -17.43 -0.09 -0.27 16 21 N -0.92 -26.64 10.61 55.49 0.59 -26.06 16 22 Si 0.91 21.85 29.56 -169.99 -5.03 16.83 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 C 0.15 3.64 5.18 -2.41 -0.01 3.63 16 27 C 0.06 1.24 3.95 -24.46 -0.10 1.14 16 28 H 0.06 1.18 6.16 -51.93 -0.32 0.86 16 29 O -0.56 -10.56 13.47 -35.23 -0.47 -11.03 16 30 H 0.06 0.92 8.05 -51.93 -0.42 0.51 16 31 H 0.09 1.24 5.92 -51.92 -0.31 0.93 16 32 H 0.07 1.07 6.14 -51.93 -0.32 0.75 16 33 H 0.19 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.15 0.61 8.06 -52.49 -0.42 0.19 16 35 H 0.14 0.47 8.06 -52.49 -0.42 0.05 16 36 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 37 H 0.18 2.10 6.79 -52.49 -0.36 1.75 16 38 H 0.04 0.75 7.06 -51.93 -0.37 0.38 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 41 H 0.04 1.04 8.09 -51.93 -0.42 0.62 16 42 H 0.08 2.02 6.85 -51.93 -0.36 1.66 16 43 H 0.37 5.37 9.12 45.56 0.42 5.79 16 LS Contribution 351.79 15.07 5.30 5.30 Total: -1.00 -34.74 351.79 -8.84 -43.58 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.47 Total: 6.47 kcal Atomic # 6 Polarization: 16.04 SS G_CDS: -3.50 Total: 12.54 kcal Atomic # 7 Polarization: -62.01 SS G_CDS: -0.74 Total: -62.75 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.40 Total: -21.97 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.83 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.74 -8.84 -43.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047457116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.945 kcal (2) G-P(sol) polarization free energy of solvation -34.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds