Wall clock time and date at job start Tue Mar 31 2020 06:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34775 * 120.00400 * 2 1 4 4 O 1.21766 * 120.00452 * 185.38843 * 3 2 1 5 5 C 1.46300 * 119.99940 * 5.39683 * 3 2 1 6 6 N 1.32513 * 125.56346 * 6.26601 * 5 3 2 7 7 C 1.32021 * 109.86701 * 180.02562 * 6 5 3 8 8 C 1.39364 * 107.93358 * 0.02562 * 7 6 5 9 9 C 1.40414 * 133.41771 * 180.02562 * 8 7 6 10 10 C 1.36333 * 119.19151 * 179.97438 * 9 8 7 11 11 C 1.40324 * 119.58481 * 359.97438 * 10 9 8 12 12 C 1.35163 * 120.39798 * 0.02562 * 11 10 9 13 13 N 1.36182 * 120.59746 * 359.67078 * 12 11 10 14 14 C 1.46502 * 119.99978 * 180.02562 * 2 1 3 15 15 H 1.08999 * 110.64600 * 178.31163 * 14 2 1 16 16 C 1.54326 * 110.71645 * 301.45459 * 14 2 1 17 17 N 1.47020 * 107.27141 * 140.73657 * 16 14 2 18 18 C 1.36939 * 125.64976 * 181.02368 * 17 16 14 19 19 H 1.08002 * 119.99911 * 9.76290 * 18 17 16 20 20 C 1.38805 * 120.00245 * 189.76535 * 18 17 16 21 21 N 1.31618 * 120.00189 * 8.30221 * 20 18 17 22 22 Si 1.86798 * 120.00115 * 188.30048 * 20 18 17 23 23 H 1.48509 * 109.47181 * 265.00952 * 22 20 18 24 24 H 1.48498 * 109.47316 * 145.01138 * 22 20 18 25 25 H 1.48504 * 109.47279 * 25.00567 * 22 20 18 26 26 C 1.47423 * 108.70472 * 1.27987 * 17 16 14 27 27 C 1.55123 * 104.72187 * 335.55853 * 26 17 16 28 28 H 1.08998 * 111.19406 * 279.18783 * 27 26 17 29 29 O 1.42906 * 110.94077 * 155.28862 * 27 26 17 30 30 H 1.09003 * 109.47147 * 275.36205 * 1 2 3 31 31 H 1.09008 * 109.47415 * 35.35638 * 1 2 3 32 32 H 1.08994 * 109.47557 * 155.35733 * 1 2 3 33 33 H 1.08001 * 126.03174 * 179.97438 * 7 6 5 34 34 H 1.07997 * 120.40566 * 0.02562 * 9 8 7 35 35 H 1.07994 * 120.20207 * 180.02562 * 10 9 8 36 36 H 1.07997 * 119.79758 * 180.02562 * 11 10 9 37 37 H 1.07996 * 119.70062 * 179.97438 * 12 11 10 38 38 H 1.08992 * 109.88407 * 21.31198 * 16 14 2 39 39 H 1.09001 * 109.88065 * 260.14943 * 16 14 2 40 40 H 0.96996 * 120.00361 * 180.02562 * 21 20 18 41 41 H 1.08998 * 110.36233 * 94.48604 * 26 17 16 42 42 H 1.08997 * 110.36928 * 216.80861 * 26 17 16 43 43 H 0.96691 * 113.99982 * 67.95278 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3525 1.1695 -0.0990 5 6 1.4123 2.4314 0.1192 6 7 0.1132 2.5549 0.3495 7 6 -0.2144 3.8330 0.3969 8 6 0.9422 4.5807 0.1840 9 6 1.2032 5.9591 0.1260 10 6 2.4774 6.3855 -0.1048 11 6 3.5024 5.4431 -0.2792 12 6 3.2323 4.1200 -0.2200 13 7 1.9650 3.6811 0.0160 14 6 2.1974 -1.2687 -0.0006 15 1 3.2726 -1.0918 -0.0305 16 6 1.8181 -2.1187 1.2304 17 7 1.7365 -3.5179 0.7864 18 6 1.4057 -4.5874 1.5750 19 1 1.0255 -4.4256 2.5728 20 6 1.5591 -5.8797 1.0919 21 7 2.1719 -6.0853 -0.0546 22 14 0.8958 -7.3270 2.0690 23 1 1.9791 -7.8929 2.9125 24 1 0.4001 -8.3694 1.1348 25 1 -0.2191 -6.8692 2.9367 26 6 2.0757 -3.5796 -0.6469 27 6 1.7548 -2.1622 -1.1894 28 1 0.6892 -2.0483 -1.3881 29 8 2.5245 -1.8766 -2.3591 30 1 -0.3633 0.0960 1.0232 31 1 -0.3634 0.8382 -0.5947 32 1 -0.3634 -0.9340 -0.4285 33 1 -1.2043 4.2290 0.5694 34 1 0.4045 6.6729 0.2633 35 1 2.6966 7.4419 -0.1523 36 1 4.5131 5.7770 -0.4618 37 1 4.0297 3.4045 -0.3562 38 1 0.8526 -1.7964 1.6201 39 1 2.5831 -2.0182 2.0003 40 1 2.2787 -6.9882 -0.3924 41 1 3.1337 -3.8074 -0.7768 42 1 1.4615 -4.3261 -1.1504 43 1 2.2837 -2.4106 -3.1284 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047457116.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:46 Heat of formation + Delta-G solvation = 34.876226 kcal Electronic energy + Delta-G solvation = -28327.455314 eV Core-core repulsion = 24374.855546 eV Total energy + Delta-G solvation = -3952.599768 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.96216 -41.19059 -39.38856 -38.52384 -36.79267 -36.40661 -34.36775 -33.91392 -32.08696 -30.69338 -29.53291 -28.88381 -27.83650 -26.49012 -25.04185 -24.53550 -23.22737 -22.43378 -22.04575 -20.59193 -19.04301 -18.93635 -18.54322 -17.86638 -17.55323 -17.36883 -17.21790 -16.67122 -16.36881 -16.05807 -15.73428 -15.69521 -15.39462 -14.97932 -14.81766 -14.50717 -14.33667 -13.90423 -13.59669 -13.46533 -13.25103 -13.20232 -13.12960 -12.99443 -12.74335 -12.72709 -12.65886 -12.07149 -11.92928 -11.78309 -11.64730 -11.49050 -11.15501 -10.96114 -10.76058 -10.41659 -9.82533 -8.97769 -8.57804 -7.91578 -5.30607 -0.24913 -0.19258 1.13412 1.19605 1.47401 1.48546 1.58812 2.00725 2.23383 2.43795 2.46992 3.00123 3.14387 3.28754 3.44357 3.58700 3.66080 3.74916 3.77150 3.91940 3.95908 4.07332 4.15410 4.28140 4.32417 4.41119 4.45855 4.69919 4.72135 4.77526 4.82567 4.91295 5.04410 5.08856 5.20686 5.29253 5.34662 5.41781 5.49949 5.58619 5.61339 5.88844 6.09979 6.15626 6.55440 6.80075 6.91532 7.00103 7.64745 8.30201 9.19400 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.027183 B = 0.002731 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.808415 B =10250.637815 C =10635.302816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.579 5.579 3 C 0.601 3.399 4 O -0.585 6.585 5 C 0.034 3.966 6 N -0.408 5.408 7 C -0.019 4.019 8 C 0.018 3.982 9 C -0.077 4.077 10 C -0.102 4.102 11 C -0.107 4.107 12 C 0.016 3.984 13 N -0.321 5.321 14 C 0.151 3.849 15 H 0.086 0.914 16 C 0.135 3.865 17 N -0.615 5.615 18 C -0.247 4.247 19 H 0.084 0.916 20 C -0.060 4.060 21 N -0.948 5.948 22 Si 0.984 3.016 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.266 1.266 26 C 0.161 3.839 27 C 0.084 3.916 28 H 0.084 0.916 29 O -0.570 6.570 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.071 0.929 33 H 0.226 0.774 34 H 0.193 0.807 35 H 0.186 0.814 36 H 0.185 0.815 37 H 0.156 0.844 38 H 0.051 0.949 39 H 0.021 0.979 40 H 0.251 0.749 41 H 0.002 0.998 42 H 0.056 0.944 43 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.963 28.813 -2.599 29.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.308 5.308 3 C 0.390 3.610 4 O -0.467 6.467 5 C -0.210 4.210 6 N -0.125 5.125 7 C -0.182 4.182 8 C -0.096 4.096 9 C -0.096 4.096 10 C -0.123 4.123 11 C -0.127 4.127 12 C -0.107 4.107 13 N 0.011 4.989 14 C 0.046 3.954 15 H 0.104 0.896 16 C 0.008 3.992 17 N -0.343 5.343 18 C -0.376 4.376 19 H 0.102 0.898 20 C -0.254 4.254 21 N -0.596 5.596 22 Si 0.811 3.189 23 H -0.215 1.215 24 H -0.216 1.216 25 H -0.190 1.190 26 C 0.035 3.965 27 C 0.023 3.977 28 H 0.102 0.898 29 O -0.377 6.377 30 H 0.085 0.915 31 H 0.116 0.884 32 H 0.090 0.910 33 H 0.242 0.758 34 H 0.210 0.790 35 H 0.203 0.797 36 H 0.202 0.798 37 H 0.174 0.826 38 H 0.069 0.931 39 H 0.039 0.961 40 H 0.060 0.940 41 H 0.020 0.980 42 H 0.075 0.925 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -4.466 28.080 -2.175 28.516 hybrid contribution 0.567 -1.354 -0.023 1.468 sum -3.900 26.726 -2.198 27.098 Atomic orbital electron populations 1.22101 0.76388 1.03370 1.03400 1.47350 1.08683 1.03699 1.71077 1.16517 0.85579 0.82396 0.76484 1.90770 1.14500 1.87431 1.53953 1.21643 0.89928 0.84995 1.24440 1.70103 1.08316 1.21779 1.12320 1.23534 0.99270 0.86796 1.08639 1.20749 0.88970 0.92362 1.07482 1.21179 0.99948 0.90158 0.98301 1.21763 0.91304 1.02327 0.96934 1.21527 1.03411 0.89444 0.98316 1.22236 0.85192 0.98917 1.04325 1.42498 1.08616 1.07194 1.40609 1.21758 0.96991 0.82062 0.94571 0.89559 1.21582 0.98981 0.84564 0.94041 1.44522 1.81365 1.01923 1.06512 1.19429 1.35823 0.84660 0.97664 0.89784 1.25724 1.00648 0.99949 0.99031 1.70129 1.46834 1.20448 1.22204 0.85000 0.78019 0.78481 0.77394 1.21549 1.21606 1.19016 1.21837 0.97119 0.92888 0.84640 1.23483 0.94711 0.94425 0.85053 0.89826 1.86427 1.63640 1.65663 1.21944 0.91548 0.88450 0.91048 0.75800 0.79000 0.79703 0.79823 0.82611 0.93096 0.96102 0.93973 0.98043 0.92525 0.75574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.71 8.01 127.77 1.02 3.73 16 2 N -0.58 -21.44 2.89 -821.04 -2.37 -23.81 16 3 C 0.60 23.07 7.63 86.34 0.66 23.73 16 4 O -0.59 -25.49 14.74 -4.56 -0.07 -25.56 16 5 C 0.03 1.09 7.47 135.57 1.01 2.10 16 6 N -0.41 -11.24 7.79 -187.51 -1.46 -12.70 16 7 C -0.02 -0.37 12.00 84.94 1.02 0.65 16 8 C 0.02 0.34 6.80 39.10 0.27 0.60 16 9 C -0.08 -0.73 10.11 22.36 0.23 -0.51 16 10 C -0.10 -0.75 10.08 22.33 0.23 -0.53 16 11 C -0.11 -1.29 9.98 22.07 0.22 -1.07 16 12 C 0.02 0.36 10.52 83.31 0.88 1.24 16 13 N -0.32 -8.46 2.95 -340.22 -1.00 -9.47 16 14 C 0.15 6.38 3.08 46.18 0.14 6.53 16 15 H 0.09 4.13 7.00 -2.39 -0.02 4.11 16 16 C 0.13 6.13 6.88 86.73 0.60 6.72 16 17 N -0.62 -32.74 3.39 -691.58 -2.35 -35.09 16 18 C -0.25 -14.01 10.24 84.03 0.86 -13.15 16 19 H 0.08 4.55 7.84 -2.91 -0.02 4.53 16 20 C -0.06 -3.41 5.42 84.86 0.46 -2.95 16 21 N -0.95 -56.84 10.61 21.65 0.23 -56.61 16 22 Si 0.98 45.53 29.56 68.60 2.03 47.55 16 23 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 C 0.16 8.20 5.18 86.93 0.45 8.65 16 27 C 0.08 3.46 3.95 32.06 0.13 3.58 16 28 H 0.08 3.13 6.16 -2.39 -0.01 3.12 16 29 O -0.57 -21.98 13.47 -148.98 -2.01 -23.99 16 30 H 0.07 1.95 8.05 -2.39 -0.02 1.93 16 31 H 0.10 2.78 5.92 -2.38 -0.01 2.76 16 32 H 0.07 2.13 6.14 -2.39 -0.01 2.11 16 33 H 0.23 2.35 8.06 -2.91 -0.02 2.33 16 34 H 0.19 0.24 8.06 -2.91 -0.02 0.22 16 35 H 0.19 -0.16 8.06 -2.91 -0.02 -0.19 16 36 H 0.18 0.98 8.06 -2.91 -0.02 0.96 16 37 H 0.16 4.07 6.79 -2.91 -0.02 4.05 16 38 H 0.05 2.17 7.06 -2.39 -0.02 2.15 16 39 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 41 H 0.00 0.09 8.09 -2.39 -0.02 0.07 16 42 H 0.06 3.08 6.85 -2.39 -0.02 3.07 16 43 H 0.39 11.45 9.12 -74.06 -0.68 10.77 16 Total: -1.00 -81.25 351.79 1.55 -79.70 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 0.39 Total: 20.64 kcal Atomic # 6 Polarization: 31.17 SS G_CDS: 8.16 Total: 39.33 kcal Atomic # 7 Polarization: -130.73 SS G_CDS: -6.95 Total: -137.68 kcal Atomic # 8 Polarization: -47.47 SS G_CDS: -2.07 Total: -49.55 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -81.25 1.55 -79.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047457116.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.575 kcal (2) G-P(sol) polarization free energy of solvation -81.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds