Wall clock time and date at job start Tue Mar 31 2020 06:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34776 * 119.99914 * 2 1 4 4 O 1.21717 * 120.00228 * 175.85872 * 3 2 1 5 5 C 1.46566 * 119.99959 * 355.86526 * 3 2 1 6 6 C 1.40557 * 126.57907 * 35.30337 * 5 3 2 7 7 N 1.30743 * 108.74318 * 179.85660 * 6 5 3 8 8 N 1.40022 * 109.60265 * 0.41514 * 7 6 5 9 9 C 1.36243 * 132.00688 * 179.70159 * 8 7 6 10 10 C 1.35195 * 120.69848 * 180.02562 * 9 8 7 11 11 C 1.40158 * 120.32294 * 359.95409 * 10 9 8 12 12 C 1.36445 * 119.40560 * 0.04269 * 11 10 9 13 13 C 1.36577 * 107.90504 * 359.73708 * 8 7 6 14 14 C 1.46494 * 119.99997 * 179.97438 * 2 1 3 15 15 H 1.09004 * 110.64267 * 178.31334 * 14 2 1 16 16 C 1.54330 * 110.72078 * 301.45327 * 14 2 1 17 17 N 1.47023 * 107.26760 * 140.73344 * 16 14 2 18 18 C 1.36938 * 125.64463 * 181.01963 * 17 16 14 19 19 H 1.07997 * 119.99841 * 5.58707 * 18 17 16 20 20 C 1.38810 * 119.99822 * 185.57607 * 18 17 16 21 21 N 1.31621 * 120.00170 * 34.94383 * 20 18 17 22 22 Si 1.86804 * 120.00113 * 214.93736 * 20 18 17 23 23 H 1.48506 * 109.46744 * 180.02562 * 22 20 18 24 24 H 1.48496 * 109.46775 * 60.00829 * 22 20 18 25 25 H 1.48498 * 109.47067 * 300.00473 * 22 20 18 26 26 C 1.47423 * 108.70639 * 1.29183 * 17 16 14 27 27 C 1.55130 * 104.72122 * 335.55098 * 26 17 16 28 28 H 1.09001 * 111.19202 * 279.19291 * 27 26 17 29 29 O 1.42895 * 110.93984 * 155.29254 * 27 26 17 30 30 H 1.09002 * 109.47707 * 275.56863 * 1 2 3 31 31 H 1.08996 * 109.47470 * 35.57633 * 1 2 3 32 32 H 1.09005 * 109.47263 * 155.56949 * 1 2 3 33 33 H 1.07996 * 125.63033 * 0.02562 * 6 5 3 34 34 H 1.07991 * 119.64874 * 0.04121 * 9 8 7 35 35 H 1.08003 * 119.83151 * 179.97438 * 10 9 8 36 36 H 1.07988 * 120.29362 * 180.02562 * 11 10 9 37 37 H 1.08008 * 120.37308 * 179.97438 * 12 11 10 38 38 H 1.09001 * 109.87768 * 21.32054 * 16 14 2 39 39 H 1.08995 * 109.88051 * 260.14794 * 16 14 2 40 40 H 0.97001 * 119.99501 * 355.35978 * 21 20 18 41 41 H 1.08999 * 110.37135 * 94.47904 * 26 17 16 42 42 H 1.09002 * 110.36759 * 216.80380 * 26 17 16 43 43 H 0.96699 * 114.00490 * 67.96089 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3536 1.1686 0.0761 5 6 1.4088 2.4348 -0.0915 6 6 0.1542 2.7216 0.4736 7 7 -0.1672 3.9543 0.1794 8 7 0.8464 4.5320 -0.5950 9 6 0.9788 5.7710 -1.1460 10 6 2.0763 6.0918 -1.8674 11 6 3.0975 5.1510 -2.0583 12 6 2.9739 3.9076 -1.5103 13 6 1.8271 3.5974 -0.7678 14 6 2.1975 -1.2687 0.0006 15 1 3.2726 -1.0917 -0.0295 16 6 1.8182 -2.1176 1.2323 17 7 1.7366 -3.5172 0.7894 18 6 1.4059 -4.5861 1.5789 19 1 1.0901 -4.4265 2.5993 20 6 1.4765 -5.8746 1.0676 21 7 2.4181 -6.1892 0.2034 22 14 0.2352 -7.1625 1.6063 23 1 0.5260 -8.4474 0.9209 24 1 -1.1336 -6.7099 1.2504 25 1 0.3268 -7.3541 3.0760 26 6 2.0760 -3.5801 -0.6438 27 6 1.7550 -2.1631 -1.1875 28 1 0.6893 -2.0494 -1.3864 29 8 2.5247 -1.8785 -2.3574 30 1 -0.3634 0.0997 1.0228 31 1 -0.3634 0.8358 -0.5978 32 1 -0.3634 -0.9357 -0.4250 33 1 -0.4442 2.0376 1.0570 34 1 0.1989 6.5046 -1.0049 35 1 2.1666 7.0781 -2.2983 36 1 3.9741 5.4080 -2.6342 37 1 3.7512 3.1704 -1.6480 38 1 0.8525 -1.7951 1.6216 39 1 2.5832 -2.0164 2.0020 40 1 3.0208 -5.5049 -0.1275 41 1 3.1340 -3.8080 -0.7735 42 1 1.4618 -4.3270 -1.1467 43 1 2.2839 -2.4131 -3.1263 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047568002.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:44 Heat of formation + Delta-G solvation = 72.430834 kcal Electronic energy + Delta-G solvation = -28315.748949 eV Core-core repulsion = 24364.777671 eV Total energy + Delta-G solvation = -3950.971278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.43198 -39.78723 -37.97202 -37.43004 -35.32485 -34.90000 -33.27221 -32.02840 -31.13054 -29.44956 -28.24319 -27.54960 -26.61898 -24.42328 -24.19031 -23.37869 -22.41700 -20.51514 -20.47670 -19.09787 -18.01174 -17.68044 -17.11190 -16.99898 -16.54766 -16.20184 -15.83014 -15.68766 -15.10254 -14.66402 -14.41329 -14.15462 -13.85018 -13.70003 -13.48400 -13.08262 -12.88605 -12.53865 -12.53196 -12.31063 -12.26097 -12.12314 -11.94115 -11.63941 -11.36431 -11.16015 -10.81378 -10.75060 -10.49989 -10.16008 -10.03248 -9.87866 -9.75844 -9.72018 -9.43231 -8.41638 -8.28654 -7.91382 -7.03499 -6.24365 -3.09508 0.33616 0.68583 1.84026 2.04136 2.86965 3.06369 3.41795 3.47857 3.51999 3.70119 3.89850 4.23365 4.34648 4.39859 4.48902 4.58220 4.73094 4.88299 5.05761 5.07982 5.13501 5.19590 5.26200 5.27298 5.39611 5.49878 5.54559 5.62163 5.65603 5.81872 5.84105 5.92953 5.98431 5.99800 6.11427 6.45634 6.47106 6.54664 6.75502 6.86346 6.88790 7.16012 7.59390 7.69544 7.98594 8.39970 8.44557 8.93930 9.78895 10.30004 11.16376 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.027285 B = 0.002780 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.969882 B =10069.922176 C =10609.399022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.596 5.596 3 C 0.600 3.400 4 O -0.544 6.544 5 C -0.299 4.299 6 C 0.115 3.885 7 N -0.321 5.321 8 N -0.268 5.268 9 C 0.108 3.892 10 C -0.160 4.160 11 C -0.078 4.078 12 C -0.104 4.104 13 C 0.157 3.843 14 C 0.141 3.859 15 H 0.114 0.886 16 C 0.133 3.867 17 N -0.599 5.599 18 C -0.350 4.350 19 H 0.073 0.927 20 C -0.024 4.024 21 N -0.912 5.912 22 Si 1.068 2.932 23 H -0.286 1.286 24 H -0.294 1.294 25 H -0.293 1.293 26 C 0.119 3.881 27 C 0.073 3.927 28 H 0.066 0.934 29 O -0.560 6.560 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.202 0.798 34 H 0.171 0.829 35 H 0.157 0.843 36 H 0.146 0.854 37 H 0.156 0.844 38 H 0.036 0.964 39 H 0.032 0.968 40 H 0.270 0.730 41 H 0.035 0.965 42 H 0.059 0.941 43 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.667 24.131 -6.777 25.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.327 5.327 3 C 0.389 3.611 4 O -0.422 6.422 5 C -0.314 4.314 6 C -0.065 4.065 7 N -0.142 5.142 8 N -0.032 5.032 9 C -0.018 4.018 10 C -0.181 4.181 11 C -0.101 4.101 12 C -0.123 4.123 13 C 0.036 3.964 14 C 0.037 3.963 15 H 0.132 0.868 16 C 0.007 3.993 17 N -0.328 5.328 18 C -0.477 4.477 19 H 0.091 0.909 20 C -0.227 4.227 21 N -0.553 5.553 22 Si 0.898 3.102 23 H -0.212 1.212 24 H -0.222 1.222 25 H -0.220 1.220 26 C -0.008 4.008 27 C 0.013 3.987 28 H 0.084 0.916 29 O -0.364 6.364 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.219 0.781 34 H 0.188 0.812 35 H 0.175 0.825 36 H 0.163 0.837 37 H 0.174 0.826 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.082 0.918 41 H 0.053 0.947 42 H 0.077 0.923 43 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -5.201 23.722 -6.163 25.055 hybrid contribution 0.607 0.585 -0.164 0.859 sum -4.594 24.307 -6.327 25.533 Atomic orbital electron populations 1.22009 0.80087 1.03560 1.01516 1.47497 1.06670 1.05391 1.73170 1.16883 0.86338 0.82089 0.75763 1.90780 1.13551 1.87203 1.50675 1.19696 0.99689 0.95825 1.16195 1.24345 0.93712 0.92843 0.95575 1.77594 1.09376 1.10688 1.16560 1.46058 1.14202 1.09565 1.33375 1.21568 1.00181 0.84636 0.95420 1.20932 0.93522 1.01862 1.01828 1.21311 0.98976 0.92394 0.97463 1.20832 0.96217 0.98395 0.96884 1.19265 0.90441 0.89176 0.97506 1.22086 0.98354 0.81485 0.94378 0.86830 1.21541 0.98745 0.85399 0.93658 1.44430 1.82089 1.01658 1.04612 1.19708 1.45126 0.85971 0.96894 0.90874 1.25738 0.99665 0.96956 1.00295 1.70867 1.13587 1.34862 1.35997 0.83435 0.75722 0.75623 0.75439 1.21166 1.22151 1.21951 1.22208 0.98914 0.93249 0.86442 1.23548 0.93947 0.96154 0.85091 0.91582 1.86482 1.63318 1.65186 1.21423 0.92274 0.91093 0.90247 0.78109 0.81158 0.82504 0.83668 0.82601 0.94626 0.94987 0.91766 0.94717 0.92268 0.77855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.89 7.74 59.85 0.46 1.36 16 2 N -0.60 -9.72 2.89 -173.41 -0.50 -10.22 16 3 C 0.60 10.30 7.56 -12.90 -0.10 10.21 16 4 O -0.54 -11.11 16.13 5.17 0.08 -11.02 16 5 C -0.30 -4.31 5.45 -104.68 -0.57 -4.88 16 6 C 0.11 1.39 9.65 -17.14 -0.17 1.22 16 7 N -0.32 -4.01 12.57 30.75 0.39 -3.62 16 8 N -0.27 -3.09 3.86 -10.55 -0.04 -3.13 16 9 C 0.11 0.81 11.18 -16.68 -0.19 0.63 16 10 C -0.16 -0.91 9.98 -39.94 -0.40 -1.30 16 11 C -0.08 -0.56 10.09 -39.51 -0.40 -0.96 16 12 C -0.10 -1.14 9.95 -39.53 -0.39 -1.53 16 13 C 0.16 2.05 6.76 -84.07 -0.57 1.48 16 14 C 0.14 2.72 3.08 -66.10 -0.20 2.51 16 15 H 0.11 2.47 7.00 -51.93 -0.36 2.11 16 16 C 0.13 2.86 6.88 -3.06 -0.02 2.84 16 17 N -0.60 -15.15 3.37 -169.93 -0.57 -15.72 16 18 C -0.35 -9.83 10.01 -15.06 -0.15 -9.98 16 19 H 0.07 2.05 8.02 -52.49 -0.42 1.62 16 20 C -0.02 -0.69 4.96 -17.43 -0.09 -0.78 16 21 N -0.91 -27.41 12.95 55.49 0.72 -26.69 16 22 Si 1.07 25.08 30.04 -169.99 -5.11 19.97 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 24 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 26 C 0.12 2.74 4.90 -2.41 -0.01 2.73 16 27 C 0.07 1.37 3.95 -24.46 -0.10 1.28 16 28 H 0.07 1.15 6.17 -51.93 -0.32 0.83 16 29 O -0.56 -9.83 13.47 -35.23 -0.47 -10.31 16 30 H 0.06 0.63 7.19 -51.93 -0.37 0.26 16 31 H 0.07 0.77 5.86 -51.93 -0.30 0.47 16 32 H 0.08 1.03 6.15 -51.93 -0.32 0.71 16 33 H 0.20 1.86 6.08 -52.49 -0.32 1.54 16 34 H 0.17 0.76 8.06 -52.49 -0.42 0.34 16 35 H 0.16 0.32 8.06 -52.48 -0.42 -0.11 16 36 H 0.15 0.62 8.06 -52.49 -0.42 0.19 16 37 H 0.16 1.82 7.85 -52.48 -0.41 1.41 16 38 H 0.04 0.72 7.07 -51.93 -0.37 0.35 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.27 8.13 5.74 -40.82 -0.23 7.90 16 41 H 0.04 0.88 7.08 -51.93 -0.37 0.51 16 42 H 0.06 1.45 7.47 -51.93 -0.39 1.07 16 43 H 0.37 4.91 9.12 45.56 0.42 5.32 16 LS Contribution 351.84 15.07 5.30 5.30 Total: -1.00 -37.24 351.84 -7.35 -44.59 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -4.26 Total: 6.02 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -2.89 Total: 4.83 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: -0.01 Total: -59.38 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.39 Total: -21.33 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.11 Total: 19.97 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -37.24 -7.35 -44.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047568002.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.017 kcal (2) G-P(sol) polarization free energy of solvation -37.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds