Wall clock time and date at job start Tue Mar 31 2020 06:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 120.00364 * 2 1 4 4 O 1.21591 * 119.99924 * 175.26963 * 3 2 1 5 5 C 1.47575 * 119.99977 * 355.27136 * 3 2 1 6 6 C 1.41757 * 120.01292 * 42.26408 * 5 3 2 7 7 C 1.35624 * 119.54279 * 179.73360 * 6 5 3 8 8 C 1.41177 * 119.50304 * 0.49459 * 7 6 5 9 9 N 1.32417 * 132.11982 * 179.77512 * 8 7 6 10 10 C 1.33594 * 109.23013 * 180.02562 * 9 8 7 11 11 C 1.35006 * 108.65820 * 359.97438 * 10 9 8 12 12 N 1.37014 * 107.13719 * 0.02562 * 11 10 9 13 13 C 1.35920 * 132.41226 * 180.02562 * 12 11 10 14 14 C 1.46510 * 119.99669 * 179.97438 * 2 1 3 15 15 H 1.08997 * 110.63901 * 178.31183 * 14 2 1 16 16 C 1.54322 * 110.71816 * 301.45580 * 14 2 1 17 17 N 1.47022 * 107.26722 * 140.73426 * 16 14 2 18 18 C 1.36939 * 125.64664 * 181.02315 * 17 16 14 19 19 H 1.07997 * 120.00061 * 10.77505 * 18 17 16 20 20 C 1.38818 * 119.99833 * 190.77931 * 18 17 16 21 21 N 1.31621 * 119.99724 * 32.66640 * 20 18 17 22 22 Si 1.86800 * 119.99712 * 212.38643 * 20 18 17 23 23 H 1.48504 * 109.46735 * 180.27700 * 22 20 18 24 24 H 1.48503 * 109.47162 * 300.27532 * 22 20 18 25 25 H 1.48494 * 109.47387 * 60.27585 * 22 20 18 26 26 C 1.47427 * 108.70725 * 1.28243 * 17 16 14 27 27 C 1.55126 * 104.71873 * 335.55724 * 26 17 16 28 28 H 1.09003 * 111.19223 * 279.18523 * 27 26 17 29 29 O 1.42903 * 110.94175 * 155.28692 * 27 26 17 30 30 H 1.09001 * 109.47284 * 275.61571 * 1 2 3 31 31 H 1.09008 * 109.47107 * 35.60653 * 1 2 3 32 32 H 1.08995 * 109.48071 * 155.60973 * 1 2 3 33 33 H 1.08006 * 120.23182 * 359.97438 * 6 5 3 34 34 H 1.07995 * 120.25141 * 180.27557 * 7 6 5 35 35 H 1.07992 * 125.67474 * 180.02562 * 10 9 8 36 36 H 1.07987 * 126.43092 * 179.97438 * 11 10 9 37 37 H 1.08000 * 119.75947 * 359.97438 * 13 12 11 38 38 H 1.09002 * 109.88389 * 21.31615 * 16 14 2 39 39 H 1.08996 * 109.87860 * 260.14782 * 16 14 2 40 40 H 0.96999 * 120.00401 * 359.67390 * 21 20 18 41 41 H 1.09005 * 110.36207 * 94.47854 * 26 17 16 42 42 H 1.08997 * 110.36663 * 216.80654 * 26 17 16 43 43 H 0.96701 * 114.00059 * 67.95091 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1689 0.0868 5 6 1.4049 2.4431 -0.1054 6 6 0.2079 2.6352 0.6293 7 6 -0.4562 3.8136 0.5296 8 6 0.0494 4.8274 -0.3128 9 7 -0.3861 6.0451 -0.5971 10 6 0.4531 6.6219 -1.4619 11 6 1.4505 5.7554 -1.7391 12 7 1.2071 4.6157 -1.0186 13 6 1.8753 3.4366 -0.9146 14 6 2.1974 -1.2689 0.0006 15 1 3.2725 -1.0919 -0.0296 16 6 1.8180 -2.1177 1.2322 17 7 1.7363 -3.5172 0.7893 18 6 1.4055 -4.5861 1.5788 19 1 1.0100 -4.4231 2.5704 20 6 1.5786 -5.8792 1.1045 21 7 2.5684 -6.1509 0.2805 22 14 0.4114 -7.2351 1.6417 23 1 0.8129 -8.5150 1.0044 24 1 0.4662 -7.3790 3.1187 25 1 -0.9725 -6.8894 1.2291 26 6 2.0756 -3.5802 -0.6440 27 6 1.7548 -2.1631 -1.1876 28 1 0.6891 -2.0494 -1.3864 29 8 2.5245 -1.8785 -2.3574 30 1 -0.3634 0.1006 1.0227 31 1 -0.3634 0.8356 -0.5984 32 1 -0.3635 -0.9359 -0.4243 33 1 -0.1707 1.8501 1.2671 34 1 -1.3667 3.9739 1.0876 35 1 0.3510 7.6163 -1.8706 36 1 2.2834 5.9279 -2.4044 37 1 2.7854 3.2849 -1.4760 38 1 0.8524 -1.7951 1.6216 39 1 2.5830 -2.0165 2.0020 40 1 3.1741 -5.4467 0.0011 41 1 3.1337 -3.8081 -0.7736 42 1 1.4613 -4.3271 -1.1468 43 1 2.2837 -2.4131 -3.1264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047592640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:22 Heat of formation + Delta-G solvation = 59.497049 kcal Electronic energy + Delta-G solvation = -28161.521445 eV Core-core repulsion = 24209.989315 eV Total energy + Delta-G solvation = -3951.532129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.16057 -40.42581 -38.38306 -37.13820 -35.54925 -35.16417 -34.00988 -32.20911 -30.84184 -29.19268 -28.57256 -27.74519 -26.87650 -24.89453 -24.01486 -23.33511 -22.12437 -21.05747 -20.61274 -19.34330 -18.50491 -17.77777 -17.55794 -17.21381 -16.58750 -16.36203 -16.05239 -15.39863 -15.02865 -14.94008 -14.50735 -14.29552 -14.10092 -13.88664 -13.66395 -13.42691 -13.29760 -13.05005 -12.66704 -12.45146 -12.24668 -12.14189 -11.92734 -11.77271 -11.46101 -11.29415 -10.85898 -10.61521 -10.49943 -10.30603 -10.14367 -10.08816 -9.89530 -9.54304 -9.21052 -8.65285 -8.43334 -8.23901 -7.10593 -6.29156 -3.21077 0.26115 0.74804 2.04826 2.29764 2.71933 2.87519 3.21820 3.43632 3.47054 3.65446 3.85521 4.06578 4.20622 4.29583 4.35162 4.51500 4.54795 4.89427 4.95668 5.01364 5.02293 5.08747 5.16444 5.22994 5.35496 5.39036 5.48035 5.49889 5.54672 5.66650 5.69723 5.79645 5.83726 6.01963 6.23986 6.25191 6.42214 6.58271 6.62103 6.68730 6.79705 7.26035 7.48406 7.61212 7.86473 7.97442 8.36287 8.86594 9.69836 10.20121 11.09683 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.027800 B = 0.002636 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.957450 B =10618.032582 C =11106.198668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.590 5.590 3 C 0.571 3.429 4 O -0.528 6.528 5 C -0.146 4.146 6 C -0.082 4.082 7 C -0.083 4.083 8 C 0.230 3.770 9 N -0.493 5.493 10 C 0.033 3.967 11 C -0.096 4.096 12 N -0.366 5.366 13 C 0.122 3.878 14 C 0.138 3.862 15 H 0.115 0.885 16 C 0.132 3.868 17 N -0.597 5.597 18 C -0.349 4.349 19 H 0.072 0.928 20 C -0.023 4.023 21 N -0.910 5.910 22 Si 1.067 2.933 23 H -0.285 1.285 24 H -0.292 1.292 25 H -0.293 1.293 26 C 0.119 3.881 27 C 0.073 3.927 28 H 0.068 0.932 29 O -0.561 6.561 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.183 0.817 36 H 0.185 0.815 37 H 0.174 0.826 38 H 0.036 0.964 39 H 0.034 0.966 40 H 0.270 0.730 41 H 0.038 0.962 42 H 0.059 0.941 43 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.120 20.205 -5.264 21.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.321 5.321 3 C 0.358 3.642 4 O -0.405 6.405 5 C -0.152 4.152 6 C -0.106 4.106 7 C -0.103 4.103 8 C -0.013 4.013 9 N -0.213 5.213 10 C -0.118 4.118 11 C -0.225 4.225 12 N -0.038 5.038 13 C -0.003 4.003 14 C 0.034 3.966 15 H 0.133 0.867 16 C 0.006 3.994 17 N -0.326 5.326 18 C -0.476 4.476 19 H 0.090 0.910 20 C -0.226 4.226 21 N -0.551 5.551 22 Si 0.896 3.104 23 H -0.211 1.211 24 H -0.219 1.219 25 H -0.221 1.221 26 C -0.007 4.007 27 C 0.013 3.987 28 H 0.085 0.915 29 O -0.365 6.365 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.101 0.899 33 H 0.172 0.828 34 H 0.175 0.825 35 H 0.200 0.800 36 H 0.202 0.798 37 H 0.191 0.809 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.055 0.945 42 H 0.077 0.923 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -6.224 19.346 -4.632 20.844 hybrid contribution 0.858 0.914 -0.531 1.361 sum -5.366 20.260 -5.163 21.585 Atomic orbital electron populations 1.22123 0.79479 1.03849 1.01981 1.47597 1.07067 1.05412 1.72031 1.17718 0.86739 0.82840 0.76928 1.90833 1.13323 1.86937 1.49424 1.19354 0.98318 0.95412 1.02121 1.21399 0.92898 0.97790 0.98519 1.20186 1.01692 0.90099 0.98349 1.21180 0.86769 0.94949 0.98448 1.70754 1.28774 1.04136 1.17635 1.22559 0.91532 1.00287 0.97380 1.22796 1.06542 0.86536 1.06651 1.42807 1.19280 1.11178 1.30557 1.21550 0.97126 0.82912 0.98731 1.22194 0.98327 0.81193 0.94847 0.86670 1.21555 0.98799 0.85640 0.93444 1.44409 1.82155 1.01652 1.04416 1.19704 1.42335 0.85340 1.00190 0.91046 1.25780 0.99171 0.97439 1.00163 1.70845 1.11733 1.34901 1.37620 0.83468 0.75565 0.75789 0.75530 1.21081 1.21882 1.22065 1.22196 0.99164 0.93053 0.86307 1.23550 0.93988 0.96209 0.85002 0.91460 1.86470 1.63359 1.65239 1.21474 0.91705 0.90836 0.89927 0.82762 0.82481 0.79995 0.79757 0.80923 0.94603 0.94826 0.91844 0.94482 0.92311 0.77641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.72 7.69 59.84 0.46 1.18 16 2 N -0.59 -8.38 2.89 -173.05 -0.50 -8.88 16 3 C 0.57 8.32 7.29 -12.45 -0.09 8.23 16 4 O -0.53 -9.62 16.31 5.29 0.09 -9.54 16 5 C -0.15 -1.65 5.08 -105.37 -0.54 -2.19 16 6 C -0.08 -0.76 7.63 -39.17 -0.30 -1.05 16 7 C -0.08 -0.77 10.09 -39.40 -0.40 -1.17 16 8 C 0.23 2.64 7.81 -155.93 -1.22 1.43 16 9 N -0.49 -5.97 11.31 -12.72 -0.14 -6.11 16 10 C 0.03 0.30 11.82 -17.93 -0.21 0.09 16 11 C -0.10 -0.83 11.76 -16.38 -0.19 -1.02 16 12 N -0.37 -3.89 2.93 -62.31 -0.18 -4.07 16 13 C 0.12 1.29 10.51 -16.37 -0.17 1.12 16 14 C 0.14 2.44 3.08 -66.09 -0.20 2.23 16 15 H 0.12 2.32 7.01 -51.93 -0.36 1.95 16 16 C 0.13 2.66 6.88 -3.07 -0.02 2.64 16 17 N -0.60 -14.44 3.34 -169.93 -0.57 -15.01 16 18 C -0.35 -9.46 10.01 -15.06 -0.15 -9.61 16 19 H 0.07 1.93 8.01 -52.49 -0.42 1.51 16 20 C -0.02 -0.64 4.98 -17.43 -0.09 -0.73 16 21 N -0.91 -26.74 12.97 55.49 0.72 -26.02 16 22 Si 1.07 24.42 30.02 -169.99 -5.10 19.32 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 26 C 0.12 2.63 4.98 -2.41 -0.01 2.62 16 27 C 0.07 1.27 3.95 -24.47 -0.10 1.17 16 28 H 0.07 1.06 6.17 -51.93 -0.32 0.74 16 29 O -0.56 -9.13 13.47 -35.23 -0.47 -9.60 16 30 H 0.06 0.58 6.76 -51.93 -0.35 0.23 16 31 H 0.07 0.64 6.04 -51.92 -0.31 0.32 16 32 H 0.08 0.93 6.15 -51.93 -0.32 0.61 16 33 H 0.15 1.14 5.61 -52.48 -0.29 0.84 16 34 H 0.16 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.19 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.17 1.62 8.05 -52.49 -0.42 1.20 16 38 H 0.04 0.67 7.07 -51.93 -0.37 0.30 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.27 7.96 5.91 -40.82 -0.24 7.72 16 41 H 0.04 0.90 6.94 -51.93 -0.36 0.54 16 42 H 0.06 1.38 7.71 -51.93 -0.40 0.98 16 43 H 0.38 4.50 9.12 45.56 0.42 4.92 16 LS Contribution 350.97 15.07 5.29 5.29 Total: -1.00 -35.60 350.97 -8.35 -43.95 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -4.25 Total: 5.75 kcal Atomic # 6 Polarization: 8.17 SS G_CDS: -3.23 Total: 4.94 kcal Atomic # 7 Polarization: -59.42 SS G_CDS: -0.67 Total: -60.10 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.39 Total: -19.14 kcal Atomic # 14 Polarization: 24.42 SS G_CDS: -5.10 Total: 19.32 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -35.60 -8.35 -43.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047592640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.446 kcal (2) G-P(sol) polarization free energy of solvation -35.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds