Wall clock time and date at job start Tue Mar 31 2020 06:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34777 * 120.00364 * 2 1 4 4 O 1.21591 * 119.99924 * 175.26963 * 3 2 1 5 5 C 1.47575 * 119.99977 * 355.27136 * 3 2 1 6 6 C 1.41757 * 120.01292 * 42.26408 * 5 3 2 7 7 C 1.35624 * 119.54279 * 179.73360 * 6 5 3 8 8 C 1.41177 * 119.50304 * 0.49459 * 7 6 5 9 9 N 1.32417 * 132.11982 * 179.77512 * 8 7 6 10 10 C 1.33594 * 109.23013 * 180.02562 * 9 8 7 11 11 C 1.35006 * 108.65820 * 359.97438 * 10 9 8 12 12 N 1.37014 * 107.13719 * 0.02562 * 11 10 9 13 13 C 1.35920 * 132.41226 * 180.02562 * 12 11 10 14 14 C 1.46510 * 119.99669 * 179.97438 * 2 1 3 15 15 H 1.08997 * 110.63901 * 178.31183 * 14 2 1 16 16 C 1.54322 * 110.71816 * 301.45580 * 14 2 1 17 17 N 1.47022 * 107.26722 * 140.73426 * 16 14 2 18 18 C 1.36939 * 125.64664 * 181.02315 * 17 16 14 19 19 H 1.07997 * 120.00061 * 10.77505 * 18 17 16 20 20 C 1.38818 * 119.99833 * 190.77931 * 18 17 16 21 21 N 1.31621 * 119.99724 * 32.66640 * 20 18 17 22 22 Si 1.86800 * 119.99712 * 212.38643 * 20 18 17 23 23 H 1.48504 * 109.46735 * 180.27700 * 22 20 18 24 24 H 1.48503 * 109.47162 * 300.27532 * 22 20 18 25 25 H 1.48494 * 109.47387 * 60.27585 * 22 20 18 26 26 C 1.47427 * 108.70725 * 1.28243 * 17 16 14 27 27 C 1.55126 * 104.71873 * 335.55724 * 26 17 16 28 28 H 1.09003 * 111.19223 * 279.18523 * 27 26 17 29 29 O 1.42903 * 110.94175 * 155.28692 * 27 26 17 30 30 H 1.09001 * 109.47284 * 275.61571 * 1 2 3 31 31 H 1.09008 * 109.47107 * 35.60653 * 1 2 3 32 32 H 1.08995 * 109.48071 * 155.60973 * 1 2 3 33 33 H 1.08006 * 120.23182 * 359.97438 * 6 5 3 34 34 H 1.07995 * 120.25141 * 180.27557 * 7 6 5 35 35 H 1.07992 * 125.67474 * 180.02562 * 10 9 8 36 36 H 1.07987 * 126.43092 * 179.97438 * 11 10 9 37 37 H 1.08000 * 119.75947 * 359.97438 * 13 12 11 38 38 H 1.09002 * 109.88389 * 21.31615 * 16 14 2 39 39 H 1.08996 * 109.87860 * 260.14782 * 16 14 2 40 40 H 0.96999 * 120.00401 * 359.67390 * 21 20 18 41 41 H 1.09005 * 110.36207 * 94.47854 * 26 17 16 42 42 H 1.08997 * 110.36663 * 216.80654 * 26 17 16 43 43 H 0.96701 * 114.00059 * 67.95091 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1689 0.0868 5 6 1.4049 2.4431 -0.1054 6 6 0.2079 2.6352 0.6293 7 6 -0.4562 3.8136 0.5296 8 6 0.0494 4.8274 -0.3128 9 7 -0.3861 6.0451 -0.5971 10 6 0.4531 6.6219 -1.4619 11 6 1.4505 5.7554 -1.7391 12 7 1.2071 4.6157 -1.0186 13 6 1.8753 3.4366 -0.9146 14 6 2.1974 -1.2689 0.0006 15 1 3.2725 -1.0919 -0.0296 16 6 1.8180 -2.1177 1.2322 17 7 1.7363 -3.5172 0.7893 18 6 1.4055 -4.5861 1.5788 19 1 1.0100 -4.4231 2.5704 20 6 1.5786 -5.8792 1.1045 21 7 2.5684 -6.1509 0.2805 22 14 0.4114 -7.2351 1.6417 23 1 0.8129 -8.5150 1.0044 24 1 0.4662 -7.3790 3.1187 25 1 -0.9725 -6.8894 1.2291 26 6 2.0756 -3.5802 -0.6440 27 6 1.7548 -2.1631 -1.1876 28 1 0.6891 -2.0494 -1.3864 29 8 2.5245 -1.8785 -2.3574 30 1 -0.3634 0.1006 1.0227 31 1 -0.3634 0.8356 -0.5984 32 1 -0.3635 -0.9359 -0.4243 33 1 -0.1707 1.8501 1.2671 34 1 -1.3667 3.9739 1.0876 35 1 0.3510 7.6163 -1.8706 36 1 2.2834 5.9279 -2.4044 37 1 2.7854 3.2849 -1.4760 38 1 0.8524 -1.7951 1.6216 39 1 2.5830 -2.0165 2.0020 40 1 3.1741 -5.4467 0.0011 41 1 3.1337 -3.8081 -0.7736 42 1 1.4613 -4.3271 -1.1468 43 1 2.2837 -2.4131 -3.1264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047592640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:21 Heat of formation + Delta-G solvation = 34.000088 kcal Electronic energy + Delta-G solvation = -28162.627076 eV Core-core repulsion = 24209.989315 eV Total energy + Delta-G solvation = -3952.637761 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.90063 -41.60776 -39.79401 -38.04469 -36.92170 -36.62428 -34.82358 -33.96271 -31.81977 -30.24488 -29.88008 -29.25017 -27.95531 -26.40033 -25.27641 -24.11467 -22.88443 -22.42542 -22.22126 -20.57332 -19.69466 -19.42654 -18.60655 -18.32530 -17.58545 -17.39841 -16.96585 -16.58165 -16.20754 -15.95170 -15.75024 -15.61289 -15.38311 -15.30837 -14.91800 -14.60919 -14.43447 -14.12872 -14.03670 -13.82649 -13.47601 -13.28310 -13.18153 -12.85092 -12.64063 -12.61282 -12.47337 -12.07257 -11.89280 -11.81988 -11.77223 -11.34771 -11.24351 -11.06764 -10.47626 -10.01121 -9.82020 -9.10672 -8.96510 -8.45529 -5.33455 -0.52550 0.01134 1.18427 1.42769 1.60162 1.67232 1.78075 1.86761 1.91312 2.42095 2.60329 2.89846 3.12459 3.17010 3.24596 3.44934 3.50440 3.58633 3.64987 3.80725 3.87226 3.91907 4.13994 4.19418 4.29138 4.33661 4.38645 4.45867 4.54409 4.72053 4.74887 4.83027 4.86684 4.87705 4.92679 4.97954 5.01286 5.28370 5.33396 5.58673 5.61007 5.86806 6.14862 6.24458 6.70575 6.75555 6.78814 6.85112 7.64913 8.18708 8.93529 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.027800 B = 0.002636 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.957450 B =10618.032582 C =11106.198668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.587 5.587 3 C 0.573 3.427 4 O -0.573 6.573 5 C -0.152 4.152 6 C -0.078 4.078 7 C -0.080 4.080 8 C 0.206 3.794 9 N -0.523 5.523 10 C 0.021 3.979 11 C -0.093 4.093 12 N -0.372 5.372 13 C 0.124 3.876 14 C 0.150 3.850 15 H 0.086 0.914 16 C 0.134 3.866 17 N -0.617 5.617 18 C -0.355 4.355 19 H 0.070 0.930 20 C -0.076 4.076 21 N -0.942 5.942 22 Si 1.120 2.880 23 H -0.295 1.295 24 H -0.276 1.276 25 H -0.274 1.274 26 C 0.125 3.875 27 C 0.097 3.903 28 H 0.096 0.904 29 O -0.567 6.567 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.080 0.920 33 H 0.175 0.825 34 H 0.180 0.820 35 H 0.211 0.789 36 H 0.216 0.784 37 H 0.180 0.820 38 H 0.060 0.940 39 H 0.014 0.986 40 H 0.255 0.745 41 H 0.005 0.995 42 H 0.039 0.961 43 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.422 21.855 -5.480 24.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.317 5.317 3 C 0.361 3.639 4 O -0.453 6.453 5 C -0.158 4.158 6 C -0.102 4.102 7 C -0.099 4.099 8 C -0.037 4.037 9 N -0.243 5.243 10 C -0.128 4.128 11 C -0.222 4.222 12 N -0.045 5.045 13 C -0.002 4.002 14 C 0.045 3.955 15 H 0.104 0.896 16 C 0.008 3.992 17 N -0.346 5.346 18 C -0.482 4.482 19 H 0.088 0.912 20 C -0.272 4.272 21 N -0.584 5.584 22 Si 0.944 3.056 23 H -0.221 1.221 24 H -0.202 1.202 25 H -0.200 1.200 26 C -0.002 4.002 27 C 0.036 3.964 28 H 0.113 0.887 29 O -0.375 6.375 30 H 0.106 0.894 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.193 0.807 34 H 0.197 0.803 35 H 0.228 0.772 36 H 0.233 0.767 37 H 0.198 0.802 38 H 0.078 0.922 39 H 0.032 0.968 40 H 0.065 0.935 41 H 0.022 0.978 42 H 0.058 0.942 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -8.569 21.050 -4.860 23.241 hybrid contribution 1.633 0.537 -0.487 1.787 sum -6.936 21.586 -5.348 23.295 Atomic orbital electron populations 1.22447 0.76787 1.04789 1.04041 1.47571 1.08508 1.03922 1.71671 1.18141 0.86290 0.83724 0.75711 1.90812 1.15459 1.87610 1.51452 1.19084 0.99197 0.93956 1.03598 1.21502 0.91910 0.98397 0.98356 1.20464 1.02250 0.89408 0.97816 1.21621 0.87362 0.95440 0.99284 1.70736 1.30006 1.04782 1.18799 1.23143 0.91177 1.01547 0.96889 1.23435 1.07065 0.85577 1.06124 1.42952 1.19226 1.11458 1.30850 1.21626 0.97149 0.82864 0.98516 1.21692 0.97251 0.82634 0.93903 0.89616 1.21630 0.99255 0.84203 0.94153 1.44648 1.81974 1.02664 1.05279 1.19988 1.41248 0.86452 1.00528 0.91200 1.27202 0.99736 1.00164 1.00121 1.70968 1.13138 1.34499 1.39811 0.82785 0.74250 0.72636 0.75964 1.22111 1.20155 1.19968 1.22090 0.96745 0.95693 0.85674 1.23263 0.95361 0.92608 0.85196 0.88696 1.86444 1.63629 1.65548 1.21859 0.89403 0.88400 0.90168 0.80739 0.80269 0.77229 0.76687 0.80248 0.92182 0.96771 0.93469 0.97761 0.94229 0.75310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.07 7.69 127.77 0.98 2.06 16 2 N -0.59 -15.73 2.89 -819.66 -2.37 -18.10 16 3 C 0.57 16.13 7.29 86.71 0.63 16.76 16 4 O -0.57 -21.12 16.31 -4.00 -0.07 -21.19 16 5 C -0.15 -3.17 5.08 -20.35 -0.10 -3.28 16 6 C -0.08 -1.22 7.63 22.53 0.17 -1.04 16 7 C -0.08 -1.27 10.09 22.39 0.23 -1.04 16 8 C 0.21 4.33 7.81 134.16 1.05 5.38 16 9 N -0.52 -11.75 11.31 -194.15 -2.20 -13.94 16 10 C 0.02 0.35 11.82 83.68 0.99 1.34 16 11 C -0.09 -1.40 11.76 83.14 0.98 -0.42 16 12 N -0.37 -7.18 2.93 -351.04 -1.03 -8.21 16 13 C 0.12 2.43 10.51 83.65 0.88 3.31 16 14 C 0.15 5.29 3.08 46.18 0.14 5.43 16 15 H 0.09 3.57 7.01 -2.39 -0.02 3.55 16 16 C 0.13 5.36 6.88 86.73 0.60 5.96 16 17 N -0.62 -30.26 3.34 -691.54 -2.31 -32.57 16 18 C -0.35 -19.38 10.01 84.03 0.84 -18.54 16 19 H 0.07 3.76 8.01 -2.91 -0.02 3.74 16 20 C -0.08 -4.24 4.98 84.86 0.42 -3.82 16 21 N -0.94 -56.96 12.97 21.65 0.28 -56.68 16 22 Si 1.12 49.14 30.02 68.60 2.06 51.20 16 23 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 24 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 C 0.12 5.64 4.98 86.93 0.43 6.08 16 27 C 0.10 3.29 3.95 32.06 0.13 3.42 16 28 H 0.10 2.77 6.17 -2.39 -0.01 2.76 16 29 O -0.57 -18.01 13.47 -148.98 -2.01 -20.02 16 30 H 0.09 1.20 6.76 -2.39 -0.02 1.18 16 31 H 0.10 1.32 6.04 -2.38 -0.01 1.31 16 32 H 0.08 1.52 6.15 -2.39 -0.01 1.50 16 33 H 0.18 1.91 5.61 -2.91 -0.02 1.90 16 34 H 0.18 1.94 8.06 -2.91 -0.02 1.91 16 35 H 0.21 1.90 8.06 -2.91 -0.02 1.88 16 36 H 0.22 1.61 8.06 -2.92 -0.02 1.58 16 37 H 0.18 3.16 8.05 -2.91 -0.02 3.14 16 38 H 0.06 2.14 7.07 -2.39 -0.02 2.12 16 39 H 0.01 0.62 8.14 -2.39 -0.02 0.61 16 40 H 0.25 15.77 5.91 -92.71 -0.55 15.22 16 41 H 0.00 0.24 6.94 -2.38 -0.02 0.22 16 42 H 0.04 1.91 7.71 -2.39 -0.02 1.89 16 43 H 0.40 8.98 9.12 -74.06 -0.68 8.31 16 Total: -1.00 -79.97 350.97 1.35 -78.62 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.62 Total: 19.29 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: 8.36 Total: 21.58 kcal Atomic # 7 Polarization: -121.87 SS G_CDS: -7.62 Total: -129.49 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -2.07 Total: -41.21 kcal Atomic # 14 Polarization: 49.14 SS G_CDS: 2.06 Total: 51.20 kcal Total: -79.97 1.35 -78.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047592640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.625 kcal (2) G-P(sol) polarization free energy of solvation -79.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds