Wall clock time and date at job start Tue Mar 31 2020 06:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34783 * 119.99766 * 2 1 4 4 O 1.21587 * 119.99546 * 183.32138 * 3 2 1 5 5 C 1.47586 * 120.00064 * 3.31887 * 3 2 1 6 6 C 1.36572 * 125.91736 * 173.48065 * 5 3 2 7 7 N 1.36200 * 107.09350 * 179.97438 * 6 5 3 8 8 C 1.36679 * 132.29205 * 180.02562 * 7 6 5 9 9 C 1.34851 * 120.63831 * 180.25259 * 8 7 6 10 10 C 1.40576 * 120.34161 * 359.49127 * 9 8 7 11 11 C 1.35894 * 119.72837 * 0.48170 * 10 9 8 12 12 C 1.37269 * 107.33943 * 359.97438 * 7 6 5 13 13 N 1.32227 * 108.37911 * 0.02562 * 12 7 6 14 14 C 1.46498 * 120.00112 * 179.97438 * 2 1 3 15 15 H 1.08998 * 110.88470 * 177.57088 * 14 2 1 16 16 C 1.54905 * 111.00583 * 301.45720 * 14 2 1 17 17 N 1.47431 * 104.83085 * 155.08369 * 16 14 2 18 18 C 1.36938 * 125.64827 * 155.83631 * 17 16 14 19 19 H 1.08000 * 120.00089 * 354.77375 * 18 17 16 20 20 C 1.38814 * 119.99832 * 174.76693 * 18 17 16 21 21 N 1.31618 * 120.00068 * 5.38450 * 20 18 17 22 22 Si 1.86801 * 119.99898 * 185.38143 * 20 18 17 23 23 H 1.48500 * 109.47183 * 94.99636 * 22 20 18 24 24 H 1.48494 * 109.47060 * 215.00056 * 22 20 18 25 25 H 1.48509 * 109.46817 * 334.99913 * 22 20 18 26 26 C 1.47023 * 108.70032 * 335.86737 * 17 16 14 27 27 C 1.54318 * 107.27574 * 1.06268 * 26 17 16 28 28 H 1.08996 * 110.72340 * 263.82919 * 27 26 17 29 29 O 1.42903 * 110.72252 * 140.55069 * 27 26 17 30 30 H 1.08999 * 109.46907 * 84.10101 * 1 2 3 31 31 H 1.08997 * 109.46516 * 204.09709 * 1 2 3 32 32 H 1.08998 * 109.47260 * 324.09846 * 1 2 3 33 33 H 1.07996 * 126.45559 * 359.94231 * 6 5 3 34 34 H 1.07999 * 119.68009 * 359.96920 * 8 7 6 35 35 H 1.07992 * 119.82935 * 179.70053 * 9 8 7 36 36 H 1.07995 * 120.13705 * 180.28515 * 10 9 8 37 37 H 1.08003 * 120.32970 * 179.75366 * 11 10 9 38 38 H 1.08997 * 110.36898 * 273.91608 * 16 14 2 39 39 H 1.09001 * 110.36845 * 36.13671 * 16 14 2 40 40 H 0.97002 * 120.00196 * 179.97438 * 21 20 18 41 41 H 1.09000 * 109.87587 * 120.48319 * 26 17 16 42 42 H 1.09004 * 109.88252 * 241.48428 * 26 17 16 43 43 H 0.96697 * 113.99213 * 66.47981 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3533 1.1681 -0.0610 5 6 1.4028 2.4443 0.0740 6 6 1.9604 3.6838 0.2077 7 7 0.9371 4.5823 0.2346 8 6 0.9116 5.9440 0.3497 9 6 -0.2602 6.6114 0.3548 10 6 -1.4748 5.9147 0.2306 11 6 -1.4662 4.5607 0.1148 12 6 -0.2326 3.8739 0.1158 13 7 0.0659 2.5893 0.0204 14 6 2.1976 -1.2687 0.0006 15 1 3.2730 -1.0965 -0.0427 16 6 1.8217 -2.1264 1.2345 17 7 2.0993 -3.5158 0.8271 18 6 2.3699 -4.5570 1.6743 19 1 2.4760 -4.3774 2.7340 20 6 2.5078 -5.8434 1.1712 21 7 2.4841 -6.0476 -0.1288 22 14 2.7270 -7.2846 2.3392 23 1 1.4073 -7.9112 2.6054 24 1 3.6355 -8.2858 1.7249 25 1 3.3126 -6.8024 3.6159 26 6 2.0382 -3.5981 -0.6396 27 6 1.7322 -2.1801 -1.1658 28 1 0.6644 -2.0583 -1.3478 29 8 2.4828 -1.9076 -2.3508 30 1 -0.3633 0.1056 -1.0222 31 1 -0.3632 -0.9381 0.4196 32 1 -0.3634 0.8324 0.6026 33 1 3.0142 3.9092 0.2793 34 1 1.8386 6.4904 0.4422 35 1 -0.2653 7.6870 0.4513 36 1 -2.4111 6.4529 0.2304 37 1 -2.3939 4.0153 0.0229 38 1 2.4388 -1.8515 2.0898 39 1 0.7655 -2.0035 1.4745 40 1 2.5808 -6.9465 -0.4805 41 1 2.9958 -3.9405 -1.0318 42 1 1.2476 -4.2860 -0.9396 43 1 2.2306 -2.4511 -3.1098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047618327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:39 Heat of formation + Delta-G solvation = 63.415240 kcal Electronic energy + Delta-G solvation = -27998.621348 eV Core-core repulsion = 24047.259124 eV Total energy + Delta-G solvation = -3951.362224 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.13394 -39.72896 -37.95830 -37.25121 -35.12847 -34.71858 -33.96756 -31.87664 -30.71945 -29.15526 -28.51105 -27.27965 -26.48064 -25.01539 -24.03896 -23.01027 -22.79827 -20.41341 -20.26090 -18.94547 -18.20701 -17.30476 -17.05332 -16.89605 -16.48535 -16.33925 -15.77706 -15.31002 -14.97468 -14.83444 -14.62151 -14.35280 -13.96117 -13.74800 -12.96400 -12.85554 -12.75402 -12.61748 -12.38782 -12.16398 -12.10310 -11.96709 -11.85327 -11.43916 -11.33113 -11.16601 -10.81607 -10.77262 -10.28508 -10.10857 -9.85621 -9.78086 -9.70290 -9.21386 -9.18167 -8.64845 -8.32743 -8.12426 -6.86236 -5.73016 -3.07447 0.28661 0.88532 1.94987 2.15973 3.06043 3.20062 3.41380 3.46456 3.48758 3.55726 3.78525 4.09023 4.31429 4.43588 4.49431 4.65428 4.75452 4.91092 5.08036 5.10736 5.33622 5.40857 5.48542 5.54842 5.60116 5.68387 5.74263 5.76776 5.90992 5.92794 6.02960 6.05428 6.14367 6.24381 6.38730 6.57660 6.65223 6.70881 7.00799 7.39942 7.42949 7.51547 7.70430 7.78553 8.21162 8.27601 8.39844 9.18244 9.78494 10.42638 11.38644 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.027371 B = 0.002525 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.726918 B =11085.506888 C =11265.218353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.581 5.581 3 C 0.596 3.404 4 O -0.537 6.537 5 C 0.020 3.980 6 C -0.020 4.020 7 N -0.365 5.365 8 C 0.056 3.944 9 C -0.140 4.140 10 C -0.105 4.105 11 C -0.073 4.073 12 C 0.219 3.781 13 N -0.457 5.457 14 C 0.132 3.868 15 H 0.115 0.885 16 C 0.132 3.868 17 N -0.599 5.599 18 C -0.229 4.229 19 H 0.081 0.919 20 C -0.007 4.007 21 N -0.921 5.921 22 Si 0.914 3.086 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.280 1.280 26 C 0.153 3.847 27 C 0.067 3.933 28 H 0.057 0.943 29 O -0.561 6.561 30 H 0.052 0.948 31 H 0.070 0.930 32 H 0.101 0.899 33 H 0.196 0.804 34 H 0.165 0.835 35 H 0.151 0.849 36 H 0.143 0.857 37 H 0.153 0.847 38 H 0.048 0.952 39 H 0.028 0.972 40 H 0.253 0.747 41 H 0.056 0.944 42 H 0.051 0.949 43 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.163 26.550 -1.182 28.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.311 5.311 3 C 0.382 3.618 4 O -0.414 6.414 5 C -0.113 4.113 6 C -0.155 4.155 7 N -0.037 5.037 8 C -0.065 4.065 9 C -0.161 4.161 10 C -0.129 4.129 11 C -0.093 4.093 12 C -0.026 4.026 13 N -0.179 5.179 14 C 0.029 3.971 15 H 0.133 0.867 16 C 0.004 3.996 17 N -0.327 5.327 18 C -0.357 4.357 19 H 0.099 0.901 20 C -0.203 4.203 21 N -0.569 5.569 22 Si 0.745 3.255 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.027 3.973 27 C 0.006 3.994 28 H 0.075 0.925 29 O -0.365 6.365 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.119 0.881 33 H 0.213 0.787 34 H 0.182 0.818 35 H 0.169 0.831 36 H 0.161 0.839 37 H 0.171 0.829 38 H 0.066 0.934 39 H 0.046 0.954 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -8.661 26.053 -0.917 27.470 hybrid contribution 0.297 -0.561 0.198 0.665 sum -8.364 25.492 -0.719 26.838 Atomic orbital electron populations 1.22203 0.78557 1.03827 1.02530 1.47540 1.07665 1.05123 1.70793 1.16912 0.86029 0.81858 0.77004 1.90798 1.12809 1.86702 1.51043 1.20692 0.89894 0.93809 1.06923 1.22616 0.94017 0.87427 1.11413 1.42781 1.08810 1.06593 1.45517 1.21691 1.01228 0.80791 1.02780 1.20845 0.91031 1.01166 1.03065 1.21055 0.98782 0.93594 0.99439 1.20363 0.94625 0.93815 1.00508 1.21195 0.87578 0.87716 1.06103 1.71101 1.12867 1.12747 1.21189 1.22440 0.98366 0.81038 0.95299 0.86703 1.21788 0.98038 0.85551 0.94187 1.44242 1.83215 1.03240 1.01983 1.19086 1.41766 0.85204 0.89632 0.90137 1.24836 1.01924 0.97415 0.96162 1.69951 1.56427 1.20405 1.10083 0.86059 0.77449 0.82307 0.79717 1.21585 1.21716 1.20554 1.21842 1.01664 0.89677 0.84113 1.23538 0.93629 0.97283 0.84924 0.92468 1.86497 1.63990 1.64791 1.21244 0.92950 0.91173 0.88092 0.78695 0.81754 0.83099 0.83903 0.82893 0.93372 0.95414 0.93668 0.92543 0.93066 0.78053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.09 8.21 59.85 0.49 1.58 16 2 N -0.58 -10.55 2.91 -172.68 -0.50 -11.05 16 3 C 0.60 10.95 7.67 -12.44 -0.10 10.86 16 4 O -0.54 -11.31 16.26 5.29 0.09 -11.22 16 5 C 0.02 0.30 6.64 -83.45 -0.55 -0.26 16 6 C -0.02 -0.24 11.47 -16.21 -0.19 -0.43 16 7 N -0.37 -3.72 2.93 -62.37 -0.18 -3.90 16 8 C 0.06 0.35 10.93 -16.59 -0.18 0.17 16 9 C -0.14 -0.64 9.98 -39.90 -0.40 -1.04 16 10 C -0.10 -0.54 10.06 -39.54 -0.40 -0.93 16 11 C -0.07 -0.56 10.11 -39.30 -0.40 -0.96 16 12 C 0.22 2.48 7.80 -156.05 -1.22 1.27 16 13 N -0.46 -6.38 7.79 -9.35 -0.07 -6.45 16 14 C 0.13 2.76 3.17 -65.78 -0.21 2.55 16 15 H 0.12 2.70 7.01 -51.93 -0.36 2.33 16 16 C 0.13 2.90 6.79 -2.53 -0.02 2.88 16 17 N -0.60 -15.72 3.39 -170.07 -0.58 -16.30 16 18 C -0.23 -6.48 10.27 -15.06 -0.15 -6.63 16 19 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 20 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 21 N -0.92 -27.19 10.34 55.49 0.57 -26.62 16 22 Si 0.91 22.31 29.56 -169.99 -5.02 17.28 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 C 0.15 3.79 5.16 -3.07 -0.02 3.78 16 27 C 0.07 1.37 3.89 -24.89 -0.10 1.27 16 28 H 0.06 1.09 7.07 -51.93 -0.37 0.72 16 29 O -0.56 -11.12 13.39 -35.23 -0.47 -11.59 16 30 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 1.06 6.33 -51.93 -0.33 0.73 16 32 H 0.10 1.47 5.31 -51.93 -0.28 1.19 16 33 H 0.20 1.96 8.06 -52.49 -0.42 1.54 16 34 H 0.17 0.52 8.06 -52.49 -0.42 0.10 16 35 H 0.15 0.21 8.06 -52.49 -0.42 -0.21 16 36 H 0.14 0.32 8.06 -52.49 -0.42 -0.10 16 37 H 0.15 0.91 8.06 -52.48 -0.42 0.49 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.03 0.59 6.34 -51.93 -0.33 0.26 16 40 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.06 1.57 7.45 -51.93 -0.39 1.19 16 42 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 43 H 0.37 5.73 9.12 45.56 0.42 6.14 16 LS Contribution 354.23 15.07 5.34 5.34 Total: -1.00 -36.42 354.23 -8.88 -45.30 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -4.52 Total: 5.40 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: -3.52 Total: 13.81 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: -0.76 Total: -64.32 kcal Atomic # 8 Polarization: -22.43 SS G_CDS: -0.39 Total: -22.82 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.42 -8.88 -45.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047618327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.719 kcal (2) G-P(sol) polarization free energy of solvation -36.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds