Wall clock time and date at job start Tue Mar 31 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34783 * 119.99766 * 2 1 4 4 O 1.21587 * 119.99546 * 183.32138 * 3 2 1 5 5 C 1.47586 * 120.00064 * 3.31887 * 3 2 1 6 6 C 1.36572 * 125.91736 * 173.48065 * 5 3 2 7 7 N 1.36200 * 107.09350 * 179.97438 * 6 5 3 8 8 C 1.36679 * 132.29205 * 180.02562 * 7 6 5 9 9 C 1.34851 * 120.63831 * 180.25259 * 8 7 6 10 10 C 1.40576 * 120.34161 * 359.49127 * 9 8 7 11 11 C 1.35894 * 119.72837 * 0.48170 * 10 9 8 12 12 C 1.37269 * 107.33943 * 359.97438 * 7 6 5 13 13 N 1.32227 * 108.37911 * 0.02562 * 12 7 6 14 14 C 1.46498 * 120.00112 * 179.97438 * 2 1 3 15 15 H 1.08998 * 110.88470 * 177.57088 * 14 2 1 16 16 C 1.54905 * 111.00583 * 301.45720 * 14 2 1 17 17 N 1.47431 * 104.83085 * 155.08369 * 16 14 2 18 18 C 1.36938 * 125.64827 * 155.83631 * 17 16 14 19 19 H 1.08000 * 120.00089 * 354.77375 * 18 17 16 20 20 C 1.38814 * 119.99832 * 174.76693 * 18 17 16 21 21 N 1.31618 * 120.00068 * 5.38450 * 20 18 17 22 22 Si 1.86801 * 119.99898 * 185.38143 * 20 18 17 23 23 H 1.48500 * 109.47183 * 94.99636 * 22 20 18 24 24 H 1.48494 * 109.47060 * 215.00056 * 22 20 18 25 25 H 1.48509 * 109.46817 * 334.99913 * 22 20 18 26 26 C 1.47023 * 108.70032 * 335.86737 * 17 16 14 27 27 C 1.54318 * 107.27574 * 1.06268 * 26 17 16 28 28 H 1.08996 * 110.72340 * 263.82919 * 27 26 17 29 29 O 1.42903 * 110.72252 * 140.55069 * 27 26 17 30 30 H 1.08999 * 109.46907 * 84.10101 * 1 2 3 31 31 H 1.08997 * 109.46516 * 204.09709 * 1 2 3 32 32 H 1.08998 * 109.47260 * 324.09846 * 1 2 3 33 33 H 1.07996 * 126.45559 * 359.94231 * 6 5 3 34 34 H 1.07999 * 119.68009 * 359.96920 * 8 7 6 35 35 H 1.07992 * 119.82935 * 179.70053 * 9 8 7 36 36 H 1.07995 * 120.13705 * 180.28515 * 10 9 8 37 37 H 1.08003 * 120.32970 * 179.75366 * 11 10 9 38 38 H 1.08997 * 110.36898 * 273.91608 * 16 14 2 39 39 H 1.09001 * 110.36845 * 36.13671 * 16 14 2 40 40 H 0.97002 * 120.00196 * 179.97438 * 21 20 18 41 41 H 1.09000 * 109.87587 * 120.48319 * 26 17 16 42 42 H 1.09004 * 109.88252 * 241.48428 * 26 17 16 43 43 H 0.96697 * 113.99213 * 66.47981 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1673 0.0000 4 8 3.3533 1.1681 -0.0610 5 6 1.4028 2.4443 0.0740 6 6 1.9604 3.6838 0.2077 7 7 0.9371 4.5823 0.2346 8 6 0.9116 5.9440 0.3497 9 6 -0.2602 6.6114 0.3548 10 6 -1.4748 5.9147 0.2306 11 6 -1.4662 4.5607 0.1148 12 6 -0.2326 3.8739 0.1158 13 7 0.0659 2.5893 0.0204 14 6 2.1976 -1.2687 0.0006 15 1 3.2730 -1.0965 -0.0427 16 6 1.8217 -2.1264 1.2345 17 7 2.0993 -3.5158 0.8271 18 6 2.3699 -4.5570 1.6743 19 1 2.4760 -4.3774 2.7340 20 6 2.5078 -5.8434 1.1712 21 7 2.4841 -6.0476 -0.1288 22 14 2.7270 -7.2846 2.3392 23 1 1.4073 -7.9112 2.6054 24 1 3.6355 -8.2858 1.7249 25 1 3.3126 -6.8024 3.6159 26 6 2.0382 -3.5981 -0.6396 27 6 1.7322 -2.1801 -1.1658 28 1 0.6644 -2.0583 -1.3478 29 8 2.4828 -1.9076 -2.3508 30 1 -0.3633 0.1056 -1.0222 31 1 -0.3632 -0.9381 0.4196 32 1 -0.3634 0.8324 0.6026 33 1 3.0142 3.9092 0.2793 34 1 1.8386 6.4904 0.4422 35 1 -0.2653 7.6870 0.4513 36 1 -2.4111 6.4529 0.2304 37 1 -2.3939 4.0153 0.0229 38 1 2.4388 -1.8515 2.0898 39 1 0.7655 -2.0035 1.4745 40 1 2.5808 -6.9465 -0.4805 41 1 2.9958 -3.9405 -1.0318 42 1 1.2476 -4.2860 -0.9396 43 1 2.2306 -2.4511 -3.1098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047618327.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:38 Heat of formation + Delta-G solvation = 37.464539 kcal Electronic energy + Delta-G solvation = -27999.746655 eV Core-core repulsion = 24047.259124 eV Total energy + Delta-G solvation = -3952.487531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.90660 -41.18809 -39.46729 -38.09626 -36.76521 -36.38203 -34.71513 -33.82187 -31.58174 -30.31564 -29.87440 -29.06462 -27.83798 -26.62218 -25.27739 -23.81367 -23.58480 -22.32597 -21.72163 -20.33477 -19.14830 -19.02343 -18.39772 -17.88515 -17.67754 -17.32438 -17.21073 -16.56163 -16.14612 -16.09897 -15.74512 -15.58533 -15.36323 -15.05367 -14.58020 -14.53256 -14.28960 -13.99520 -13.66860 -13.39077 -13.18806 -13.18262 -13.09701 -12.76493 -12.72717 -12.65833 -12.57216 -12.07080 -12.04943 -11.89293 -11.59248 -11.50752 -10.98712 -10.89227 -10.76430 -10.00306 -9.69808 -8.97616 -8.90598 -7.89376 -5.27391 -0.31012 0.21717 0.97488 1.41395 1.46379 1.48502 1.57629 1.87904 2.24884 2.47566 2.57971 2.96541 3.10494 3.31594 3.39909 3.54743 3.75768 3.82198 3.89574 4.03327 4.07661 4.15175 4.22488 4.27649 4.30423 4.42632 4.53067 4.65880 4.70410 4.77686 4.80452 4.91327 5.08549 5.15501 5.29207 5.33973 5.38750 5.39287 5.54375 5.57366 5.63191 5.96705 6.11058 6.28546 6.58060 6.81932 7.01035 7.03092 7.66847 8.30886 9.20964 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.027371 B = 0.002525 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.726918 B =11085.506888 C =11265.218353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.583 5.583 3 C 0.592 3.408 4 O -0.576 6.576 5 C -0.016 4.016 6 C -0.017 4.017 7 N -0.366 5.366 8 C 0.036 3.964 9 C -0.126 4.126 10 C -0.078 4.078 11 C -0.104 4.104 12 C 0.213 3.787 13 N -0.488 5.488 14 C 0.144 3.856 15 H 0.083 0.917 16 C 0.135 3.865 17 N -0.620 5.620 18 C -0.247 4.247 19 H 0.086 0.914 20 C -0.063 4.063 21 N -0.949 5.949 22 Si 0.984 3.016 23 H -0.282 1.282 24 H -0.294 1.294 25 H -0.268 1.268 26 C 0.166 3.834 27 C 0.086 3.914 28 H 0.082 0.918 29 O -0.571 6.571 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.111 0.889 33 H 0.209 0.791 34 H 0.195 0.805 35 H 0.194 0.806 36 H 0.181 0.819 37 H 0.165 0.835 38 H 0.044 0.956 39 H 0.048 0.952 40 H 0.250 0.750 41 H 0.017 0.983 42 H 0.030 0.970 43 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.253 30.071 -0.457 32.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.312 5.312 3 C 0.381 3.619 4 O -0.456 6.456 5 C -0.147 4.147 6 C -0.154 4.154 7 N -0.037 5.037 8 C -0.083 4.083 9 C -0.146 4.146 10 C -0.101 4.101 11 C -0.124 4.124 12 C -0.033 4.033 13 N -0.211 5.211 14 C 0.039 3.961 15 H 0.101 0.899 16 C 0.009 3.991 17 N -0.347 5.347 18 C -0.376 4.376 19 H 0.103 0.897 20 C -0.256 4.256 21 N -0.598 5.598 22 Si 0.812 3.188 23 H -0.209 1.209 24 H -0.221 1.221 25 H -0.193 1.193 26 C 0.040 3.960 27 C 0.025 3.975 28 H 0.100 0.900 29 O -0.378 6.378 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.129 0.871 33 H 0.225 0.775 34 H 0.212 0.788 35 H 0.211 0.789 36 H 0.199 0.801 37 H 0.182 0.818 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.035 0.965 42 H 0.048 0.952 43 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -10.787 29.616 -0.192 31.520 hybrid contribution 0.854 -1.359 -0.037 1.606 sum -9.933 28.257 -0.230 29.953 Atomic orbital electron populations 1.22286 0.76616 1.04253 1.03191 1.47554 1.08643 1.04114 1.70918 1.17412 0.85830 0.82897 0.75797 1.90753 1.14547 1.87443 1.52874 1.20220 0.90866 0.93013 1.10628 1.22703 0.94938 0.87078 1.10651 1.42904 1.07748 1.07892 1.45122 1.22473 1.03672 0.79174 1.03008 1.21473 0.89925 1.03125 1.00070 1.21625 1.00725 0.92575 0.95208 1.20675 0.93687 0.95122 1.02938 1.21720 0.89092 0.87310 1.05170 1.70900 1.12089 1.14767 1.23330 1.21995 0.97005 0.82341 0.94805 0.89879 1.21856 0.98885 0.83811 0.94584 1.44508 1.83266 1.04517 1.02456 1.19476 1.41643 0.86167 0.90300 0.89667 1.25726 1.02032 1.00016 0.97828 1.70158 1.57293 1.20566 1.11749 0.84980 0.77341 0.78548 0.77947 1.20904 1.22078 1.19309 1.21581 0.98754 0.91869 0.83805 1.23286 0.94829 0.94307 0.85084 0.90028 1.86464 1.64341 1.65250 1.21724 0.92311 0.91052 0.87090 0.77454 0.78819 0.78900 0.80149 0.81772 0.93786 0.93396 0.94111 0.96465 0.95226 0.75772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.37 8.21 127.77 1.05 3.42 16 2 N -0.58 -21.72 2.91 -818.50 -2.38 -24.10 16 3 C 0.59 22.68 7.67 86.71 0.67 23.35 16 4 O -0.58 -25.63 16.26 -3.99 -0.06 -25.70 16 5 C -0.02 -0.49 6.64 40.80 0.27 -0.22 16 6 C -0.02 -0.42 11.47 83.63 0.96 0.54 16 7 N -0.37 -6.82 2.93 -351.25 -1.03 -7.85 16 8 C 0.04 0.32 10.93 83.16 0.91 1.23 16 9 C -0.13 -0.48 9.98 22.06 0.22 -0.26 16 10 C -0.08 -0.41 10.06 22.30 0.22 -0.19 16 11 C -0.10 -1.32 10.11 22.45 0.23 -1.10 16 12 C 0.21 4.56 7.80 134.21 1.05 5.60 16 13 N -0.49 -13.61 7.79 -183.50 -1.43 -15.04 16 14 C 0.14 6.20 3.17 46.39 0.15 6.34 16 15 H 0.08 4.14 7.01 -2.39 -0.02 4.12 16 16 C 0.13 6.09 6.79 86.85 0.59 6.68 16 17 N -0.62 -33.57 3.39 -691.98 -2.35 -35.92 16 18 C -0.25 -14.32 10.27 84.03 0.86 -13.45 16 19 H 0.09 4.71 7.83 -2.91 -0.02 4.69 16 20 C -0.06 -3.64 5.48 84.86 0.47 -3.18 16 21 N -0.95 -57.84 10.34 21.65 0.22 -57.62 16 22 Si 0.98 46.52 29.56 68.60 2.03 48.55 16 23 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 26 C 0.17 8.60 5.16 86.73 0.45 9.05 16 27 C 0.09 3.60 3.89 31.78 0.12 3.72 16 28 H 0.08 3.07 7.07 -2.39 -0.02 3.05 16 29 O -0.57 -23.09 13.39 -148.98 -1.99 -25.08 16 30 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 2.11 6.33 -2.39 -0.02 2.10 16 32 H 0.11 3.22 5.31 -2.39 -0.01 3.21 16 33 H 0.21 4.19 8.06 -2.91 -0.02 4.16 16 34 H 0.19 0.44 8.06 -2.91 -0.02 0.42 16 35 H 0.19 -0.82 8.06 -2.91 -0.02 -0.84 16 36 H 0.18 -0.34 8.06 -2.91 -0.02 -0.37 16 37 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 38 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 39 H 0.05 2.00 6.34 -2.39 -0.02 1.99 16 40 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 41 H 0.02 1.01 7.45 -2.39 -0.02 1.00 16 42 H 0.03 1.64 7.36 -2.39 -0.02 1.63 16 43 H 0.39 12.16 9.12 -74.06 -0.68 11.49 16 Total: -1.00 -83.92 354.23 1.59 -82.33 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: 0.38 Total: 18.89 kcal Atomic # 6 Polarization: 33.34 SS G_CDS: 8.21 Total: 41.55 kcal Atomic # 7 Polarization: -133.57 SS G_CDS: -6.97 Total: -140.53 kcal Atomic # 8 Polarization: -48.72 SS G_CDS: -2.06 Total: -50.78 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 2.03 Total: 48.55 kcal Total: -83.92 1.59 -82.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047618327.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.791 kcal (2) G-P(sol) polarization free energy of solvation -83.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds