Wall clock time and date at job start Tue Mar 31 2020 04:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00130 * 2 1 4 4 H 1.48497 * 109.47271 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47170 * 300.00413 * 3 2 1 6 6 H 1.48505 * 109.46794 * 60.00214 * 3 2 1 7 7 C 1.38813 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99971 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99953 * 359.97438 * 7 2 1 10 10 C 1.46634 * 125.33465 * 0.02562 * 9 7 2 11 11 C 1.53690 * 108.01128 * 180.81648 * 10 9 7 12 12 H 1.08997 * 113.05156 * 253.80665 * 11 10 9 13 13 C 1.53720 * 109.33876 * 127.55984 * 11 10 9 14 14 N 1.46671 * 107.94367 * 266.24825 * 13 11 10 15 15 C 1.34770 * 125.34078 * 180.54609 * 14 13 11 16 16 O 1.21518 * 120.00046 * 0.02562 * 15 14 13 17 17 C 1.48166 * 120.00216 * 180.02562 * 15 14 13 18 18 C 1.39248 * 119.66126 * 180.02562 * 17 15 14 19 19 C 1.39758 * 118.90488 * 179.97438 * 18 17 15 20 20 C 1.48145 * 120.88743 * 180.27456 * 19 18 17 21 21 N 1.34776 * 120.00013 * 179.71931 * 20 19 18 22 22 O 1.21512 * 119.99940 * 359.72765 * 20 19 18 23 23 C 1.39805 * 118.22071 * 0.02562 * 19 18 17 24 24 C 1.38497 * 119.19030 * 359.97438 * 23 19 18 25 25 N 1.31466 * 121.03723 * 0.02562 * 24 23 19 26 26 C 1.46778 * 109.32070 * 0.81263 * 14 13 11 27 27 C 1.54158 * 106.52433 * 341.08890 * 26 14 13 28 28 H 1.08997 * 113.83443 * 265.68059 * 27 26 14 29 29 C 1.46748 * 125.32528 * 180.02562 * 9 7 2 30 30 H 0.96996 * 119.99853 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.76076 * 61.17451 * 10 9 7 32 32 H 1.08996 * 109.76179 * 300.46259 * 10 9 7 33 33 H 1.08999 * 109.77284 * 146.62986 * 13 11 10 34 34 H 1.09001 * 109.77694 * 25.87215 * 13 11 10 35 35 H 1.08001 * 120.54609 * 0.02562 * 18 17 15 36 36 H 0.97002 * 119.99950 * 0.02562 * 21 20 19 37 37 H 0.97001 * 120.00178 * 180.02562 * 21 20 19 38 38 H 1.08005 * 120.40059 * 180.02562 * 23 19 18 39 39 H 1.08000 * 119.47781 * 179.97438 * 24 23 19 40 40 H 1.09004 * 110.02760 * 100.50831 * 26 14 13 41 41 H 1.08995 * 110.02570 * 221.92456 * 26 14 13 42 42 H 1.08995 * 110.01556 * 42.36070 * 29 9 7 43 43 H 1.09005 * 110.00701 * 280.99416 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1345 -2.5243 -0.0005 11 6 -0.4718 -4.0236 0.0203 12 1 -0.8371 -4.3922 -0.9382 13 6 -1.4477 -4.3098 1.1730 14 7 -0.6597 -4.7126 2.3427 15 6 -1.1664 -5.0540 3.5439 16 8 -2.3685 -5.0433 3.7217 17 6 -0.2578 -5.4426 4.6479 18 6 -0.7889 -5.7947 5.8860 19 6 0.0825 -6.1590 6.9160 20 6 -0.4352 -6.5473 8.2486 21 7 0.4211 -6.9010 9.2274 22 8 -1.6320 -6.5470 8.4591 23 6 1.4557 -6.1525 6.6535 24 6 1.9008 -5.7890 5.3934 25 7 1.0535 -5.4515 4.4465 26 6 0.7675 -4.6792 2.0016 27 6 0.8513 -4.7083 0.4626 28 1 0.9783 -5.7079 0.0472 29 6 1.9381 -3.7215 -0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5474 -2.0661 -0.8993 32 1 -0.5497 -2.0408 0.8836 33 1 -2.1261 -5.1148 0.8905 34 1 -2.0186 -3.4106 1.4048 35 1 -1.8568 -5.7870 6.0474 36 1 1.3765 -6.9010 9.0594 37 1 0.0821 -7.1555 10.0999 38 1 2.1607 -6.4283 7.4238 39 1 2.9606 -5.7819 5.1856 40 1 1.2219 -3.7660 2.3859 41 1 1.2713 -5.5513 2.4184 42 1 2.7815 -3.7447 0.6895 43 1 2.2713 -3.9789 -1.0060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049255805.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:32 Heat of formation + Delta-G solvation = 12.857965 kcal Electronic energy + Delta-G solvation = -28126.435490 eV Core-core repulsion = 24172.880938 eV Total energy + Delta-G solvation = -3953.554552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.15083 -39.99904 -39.09993 -37.97578 -34.96174 -34.46224 -32.87358 -32.19369 -31.69629 -30.14246 -29.36541 -26.08106 -25.51784 -25.25233 -24.23340 -22.81324 -21.67779 -20.05026 -19.86145 -19.24290 -18.44198 -17.62519 -17.13264 -16.67099 -16.22962 -16.09851 -15.68485 -15.38938 -15.14415 -14.83743 -14.56969 -14.34106 -14.19308 -13.74755 -13.67430 -13.10669 -12.83536 -12.68783 -12.32229 -11.99918 -11.88296 -11.45663 -11.36956 -10.86853 -10.85012 -10.74866 -10.42248 -10.33676 -10.24078 -10.21959 -10.05398 -9.99566 -9.84585 -9.60893 -9.55260 -9.41588 -8.59378 -8.25529 -6.81440 -5.71104 -3.04561 0.15618 0.55663 2.31585 2.81365 2.88020 3.14194 3.39959 3.45108 3.48004 3.68488 3.93310 4.15495 4.34259 4.48231 4.50407 4.63900 4.80055 5.00024 5.10620 5.30555 5.37357 5.43784 5.52893 5.57597 5.65474 5.75415 5.82927 5.99429 6.09215 6.19110 6.25800 6.27577 6.36332 6.50565 6.61805 6.64988 6.68403 6.75530 6.88523 7.40768 7.57937 7.60011 7.70961 7.75261 7.83465 8.26039 8.28179 9.23221 9.84048 10.47914 11.40420 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.003063 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.878361 B = 9139.175345 C = 9672.202982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.008 4.008 3 Si 0.911 3.089 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.228 4.228 8 H 0.079 0.921 9 N -0.602 5.602 10 C 0.185 3.815 11 C -0.124 4.124 12 H 0.091 0.909 13 C 0.119 3.881 14 N -0.583 5.583 15 C 0.576 3.424 16 O -0.538 6.538 17 C 0.092 3.908 18 C -0.057 4.057 19 C -0.102 4.102 20 C 0.566 3.434 21 N -0.847 5.847 22 O -0.525 6.525 23 C -0.125 4.125 24 C 0.097 3.903 25 N -0.429 5.429 26 C 0.120 3.880 27 C -0.117 4.117 28 H 0.088 0.912 29 C 0.147 3.853 30 H 0.252 0.748 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.161 0.839 36 H 0.402 0.598 37 H 0.409 0.591 38 H 0.143 0.857 39 H 0.172 0.828 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.038 0.962 43 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.709 -16.627 13.533 22.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.204 4.204 3 Si 0.742 3.258 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.356 4.356 8 H 0.096 0.904 9 N -0.329 5.329 10 C 0.060 3.940 11 C -0.143 4.143 12 H 0.109 0.891 13 C -0.004 4.004 14 N -0.313 5.313 15 C 0.362 3.638 16 O -0.416 6.416 17 C -0.046 4.046 18 C -0.078 4.078 19 C -0.113 4.113 20 C 0.351 3.649 21 N -0.412 5.412 22 O -0.400 6.400 23 C -0.146 4.146 24 C -0.062 4.062 25 N -0.141 5.141 26 C -0.002 4.002 27 C -0.137 4.137 28 H 0.106 0.894 29 C 0.020 3.980 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.179 0.821 36 H 0.232 0.768 37 H 0.240 0.760 38 H 0.161 0.839 39 H 0.189 0.811 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.056 0.944 43 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 4.464 -16.097 12.814 21.053 hybrid contribution 0.654 0.646 1.131 1.457 sum 5.118 -15.451 13.946 21.434 Atomic orbital electron populations 1.69968 1.04851 1.24927 1.57033 1.24804 0.95710 0.97685 1.02226 0.86057 0.78684 0.83868 0.77214 1.20521 1.21782 1.21843 1.19068 0.90434 0.82309 1.43784 0.90352 1.44212 1.01490 0.99987 1.87185 1.21107 0.84609 0.86793 1.01500 1.23156 0.94022 1.00546 0.96621 0.89103 1.21923 0.93998 1.00025 0.84419 1.48083 1.09499 1.63423 1.10303 1.17342 0.86659 0.78655 0.81120 1.90799 1.14179 1.54903 1.81721 1.21202 0.90472 0.99155 0.93797 1.22230 1.02702 0.92220 0.90661 1.20232 0.94034 1.02396 0.94614 1.18099 0.86082 0.76598 0.84145 1.43681 1.10606 1.71513 1.15387 1.90870 1.15142 1.52017 1.81984 1.22520 0.94710 0.98201 0.99134 1.22938 1.00305 0.94705 0.88279 1.67872 1.02781 1.09702 1.33776 1.22374 0.80308 1.03429 0.94079 1.23045 0.96953 0.98905 0.94747 0.89398 1.21144 0.93810 0.85669 0.97355 0.93786 0.93756 0.93126 0.91997 0.90577 0.82112 0.76832 0.75980 0.83925 0.81116 0.90228 0.89332 0.94368 0.96391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.90 10.25 55.49 0.57 -26.33 16 2 C -0.01 -0.22 5.48 -17.43 -0.10 -0.32 16 3 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 4 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 7 C -0.23 -6.20 10.25 -15.06 -0.15 -6.35 16 8 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 9 N -0.60 -14.84 3.37 -171.94 -0.58 -15.42 16 10 C 0.18 4.37 4.75 -3.61 -0.02 4.35 16 11 C -0.12 -2.24 4.02 -88.61 -0.36 -2.59 16 12 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 13 C 0.12 2.10 6.23 -3.57 -0.02 2.08 16 14 N -0.58 -10.26 3.31 -173.16 -0.57 -10.84 16 15 C 0.58 10.27 7.83 -12.19 -0.10 10.18 16 16 O -0.54 -10.90 16.63 5.35 0.09 -10.81 16 17 C 0.09 1.36 6.72 -83.05 -0.56 0.80 16 18 C -0.06 -0.75 9.20 -38.64 -0.36 -1.11 16 19 C -0.10 -1.02 5.91 -104.68 -0.62 -1.64 16 20 C 0.57 5.62 8.07 -12.19 -0.10 5.52 16 21 N -0.85 -4.11 8.83 30.60 0.27 -3.84 16 22 O -0.52 -7.53 17.28 5.36 0.09 -7.44 16 23 C -0.12 -0.86 9.62 -38.90 -0.37 -1.23 16 24 C 0.10 0.83 11.17 -17.61 -0.20 0.63 16 25 N -0.43 -5.47 6.63 -9.85 -0.07 -5.53 16 26 C 0.12 1.98 4.96 -3.29 -0.02 1.96 16 27 C -0.12 -1.92 4.19 -88.26 -0.37 -2.29 16 28 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 29 C 0.15 2.86 6.37 -3.43 -0.02 2.84 16 30 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.04 1.17 7.45 -51.93 -0.39 0.78 16 32 H 0.05 1.36 6.51 -51.93 -0.34 1.02 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.49 7.44 -51.93 -0.39 1.10 16 35 H 0.16 2.35 7.33 -52.49 -0.38 1.97 16 36 H 0.40 0.66 6.97 -40.82 -0.28 0.38 16 37 H 0.41 1.49 8.93 -40.82 -0.36 1.12 16 38 H 0.14 0.33 6.53 -52.48 -0.34 -0.02 16 39 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 40 H 0.08 1.54 7.72 -51.93 -0.40 1.13 16 41 H 0.09 1.28 6.18 -51.93 -0.32 0.96 16 42 H 0.04 0.72 7.94 -51.93 -0.41 0.30 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 351.69 15.07 5.30 5.30 Total: -1.00 -36.02 351.69 -8.55 -44.57 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -5.28 Total: 0.55 kcal Atomic # 6 Polarization: 16.17 SS G_CDS: -3.35 Total: 12.82 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: -0.38 Total: -61.96 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: 0.18 Total: -18.25 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.02 -8.55 -44.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049255805.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.430 kcal (2) G-P(sol) polarization free energy of solvation -36.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds