Wall clock time and date at job start Tue Mar 31 2020 04:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86796 * 120.00130 * 2 1 4 4 H 1.48497 * 109.47271 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47170 * 300.00413 * 3 2 1 6 6 H 1.48505 * 109.46794 * 60.00214 * 3 2 1 7 7 C 1.38813 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99971 * 179.97438 * 7 2 1 9 9 N 1.36935 * 119.99953 * 359.97438 * 7 2 1 10 10 C 1.46634 * 125.33465 * 0.02562 * 9 7 2 11 11 C 1.53690 * 108.01128 * 180.81648 * 10 9 7 12 12 H 1.08997 * 113.05156 * 253.80665 * 11 10 9 13 13 C 1.53720 * 109.33876 * 127.55984 * 11 10 9 14 14 N 1.46671 * 107.94367 * 266.24825 * 13 11 10 15 15 C 1.34770 * 125.34078 * 180.54609 * 14 13 11 16 16 O 1.21518 * 120.00046 * 0.02562 * 15 14 13 17 17 C 1.48166 * 120.00216 * 180.02562 * 15 14 13 18 18 C 1.39248 * 119.66126 * 180.02562 * 17 15 14 19 19 C 1.39758 * 118.90488 * 179.97438 * 18 17 15 20 20 C 1.48145 * 120.88743 * 180.27456 * 19 18 17 21 21 N 1.34776 * 120.00013 * 179.71931 * 20 19 18 22 22 O 1.21512 * 119.99940 * 359.72765 * 20 19 18 23 23 C 1.39805 * 118.22071 * 0.02562 * 19 18 17 24 24 C 1.38497 * 119.19030 * 359.97438 * 23 19 18 25 25 N 1.31466 * 121.03723 * 0.02562 * 24 23 19 26 26 C 1.46778 * 109.32070 * 0.81263 * 14 13 11 27 27 C 1.54158 * 106.52433 * 341.08890 * 26 14 13 28 28 H 1.08997 * 113.83443 * 265.68059 * 27 26 14 29 29 C 1.46748 * 125.32528 * 180.02562 * 9 7 2 30 30 H 0.96996 * 119.99853 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.76076 * 61.17451 * 10 9 7 32 32 H 1.08996 * 109.76179 * 300.46259 * 10 9 7 33 33 H 1.08999 * 109.77284 * 146.62986 * 13 11 10 34 34 H 1.09001 * 109.77694 * 25.87215 * 13 11 10 35 35 H 1.08001 * 120.54609 * 0.02562 * 18 17 15 36 36 H 0.97002 * 119.99950 * 0.02562 * 21 20 19 37 37 H 0.97001 * 120.00178 * 180.02562 * 21 20 19 38 38 H 1.08005 * 120.40059 * 180.02562 * 23 19 18 39 39 H 1.08000 * 119.47781 * 179.97438 * 24 23 19 40 40 H 1.09004 * 110.02760 * 100.50831 * 26 14 13 41 41 H 1.08995 * 110.02570 * 221.92456 * 26 14 13 42 42 H 1.08995 * 110.01556 * 42.36070 * 29 9 7 43 43 H 1.09005 * 110.00701 * 280.99416 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3964 -1.2124 6 1 1.8915 2.3963 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0903 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0005 10 6 -0.1345 -2.5243 -0.0005 11 6 -0.4718 -4.0236 0.0203 12 1 -0.8371 -4.3922 -0.9382 13 6 -1.4477 -4.3098 1.1730 14 7 -0.6597 -4.7126 2.3427 15 6 -1.1664 -5.0540 3.5439 16 8 -2.3685 -5.0433 3.7217 17 6 -0.2578 -5.4426 4.6479 18 6 -0.7889 -5.7947 5.8860 19 6 0.0825 -6.1590 6.9160 20 6 -0.4352 -6.5473 8.2486 21 7 0.4211 -6.9010 9.2274 22 8 -1.6320 -6.5470 8.4591 23 6 1.4557 -6.1525 6.6535 24 6 1.9008 -5.7890 5.3934 25 7 1.0535 -5.4515 4.4465 26 6 0.7675 -4.6792 2.0016 27 6 0.8513 -4.7083 0.4626 28 1 0.9783 -5.7079 0.0472 29 6 1.9381 -3.7215 -0.0005 30 1 -0.4850 0.8400 -0.0004 31 1 -0.5474 -2.0661 -0.8993 32 1 -0.5497 -2.0408 0.8836 33 1 -2.1261 -5.1148 0.8905 34 1 -2.0186 -3.4106 1.4048 35 1 -1.8568 -5.7870 6.0474 36 1 1.3765 -6.9010 9.0594 37 1 0.0821 -7.1555 10.0999 38 1 2.1607 -6.4283 7.4238 39 1 2.9606 -5.7819 5.1856 40 1 1.2219 -3.7660 2.3859 41 1 1.2713 -5.5513 2.4184 42 1 2.7815 -3.7447 0.6895 43 1 2.2713 -3.9789 -1.0060 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001049255805.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:51:31 Heat of formation + Delta-G solvation = -15.638235 kcal Electronic energy + Delta-G solvation = -28127.671178 eV Core-core repulsion = 24172.880938 eV Total energy + Delta-G solvation = -3954.790240 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.14188 -41.20141 -40.11327 -39.34266 -36.63008 -35.21232 -34.19438 -33.49848 -32.71436 -31.60975 -31.07571 -27.66743 -26.99615 -26.38131 -25.47351 -24.07406 -22.66026 -21.76689 -20.94687 -20.70986 -19.35291 -18.78787 -18.47862 -17.94640 -17.53769 -16.92702 -16.81573 -16.61058 -16.31303 -16.13288 -15.87998 -15.57943 -15.41320 -14.99110 -14.82682 -14.60882 -14.35686 -14.14986 -13.60668 -13.56073 -13.27640 -13.05202 -12.97183 -12.74276 -12.66508 -11.93232 -11.87984 -11.84727 -11.76019 -11.47378 -11.44192 -11.31648 -11.16977 -10.80281 -10.69136 -10.48554 -10.41158 -9.66335 -8.84001 -7.82546 -5.17135 -0.66935 -0.31506 1.39136 1.46265 1.47012 1.57400 1.76739 1.87756 2.27968 2.51296 2.73957 2.93206 3.36213 3.39908 3.53054 3.62349 3.66541 3.74756 3.80485 3.89398 3.96606 4.13717 4.35639 4.37881 4.54466 4.57711 4.62639 4.68431 4.79249 4.84714 4.87624 4.98354 5.13203 5.17171 5.23094 5.44737 5.46031 5.51544 5.65443 5.75443 5.79462 6.23839 6.27463 6.36995 6.56678 6.93975 7.13598 7.14833 7.83684 8.45304 9.27858 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015631 B = 0.003063 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.878361 B = 9139.175345 C = 9672.202982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.072 4.072 3 Si 0.976 3.024 4 H -0.259 1.259 5 H -0.295 1.295 6 H -0.299 1.299 7 C -0.232 4.232 8 H 0.088 0.912 9 N -0.623 5.623 10 C 0.198 3.802 11 C -0.112 4.112 12 H 0.118 0.882 13 C 0.121 3.879 14 N -0.589 5.589 15 C 0.568 3.432 16 O -0.578 6.578 17 C 0.065 3.935 18 C -0.074 4.074 19 C -0.108 4.108 20 C 0.565 3.435 21 N -0.815 5.815 22 O -0.581 6.581 23 C -0.084 4.084 24 C 0.100 3.900 25 N -0.449 5.449 26 C 0.131 3.869 27 C -0.099 4.099 28 H 0.134 0.866 29 C 0.142 3.858 30 H 0.243 0.757 31 H 0.005 0.995 32 H 0.004 0.996 33 H 0.083 0.917 34 H 0.043 0.957 35 H 0.131 0.869 36 H 0.422 0.578 37 H 0.418 0.582 38 H 0.204 0.796 39 H 0.217 0.783 40 H 0.047 0.953 41 H 0.118 0.882 42 H 0.050 0.950 43 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.029 -19.214 14.940 26.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.264 4.264 3 Si 0.805 3.195 4 H -0.183 1.183 5 H -0.222 1.222 6 H -0.226 1.226 7 C -0.361 4.361 8 H 0.106 0.894 9 N -0.349 5.349 10 C 0.073 3.927 11 C -0.132 4.132 12 H 0.136 0.864 13 C -0.002 4.002 14 N -0.318 5.318 15 C 0.356 3.644 16 O -0.459 6.459 17 C -0.071 4.071 18 C -0.096 4.096 19 C -0.119 4.119 20 C 0.349 3.651 21 N -0.381 5.381 22 O -0.461 6.461 23 C -0.104 4.104 24 C -0.060 4.060 25 N -0.161 5.161 26 C 0.009 3.991 27 C -0.119 4.119 28 H 0.152 0.848 29 C 0.016 3.984 30 H 0.052 0.948 31 H 0.023 0.977 32 H 0.023 0.977 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.149 0.851 36 H 0.256 0.744 37 H 0.252 0.748 38 H 0.221 0.779 39 H 0.233 0.767 40 H 0.065 0.935 41 H 0.135 0.865 42 H 0.068 0.932 43 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 8.873 -18.728 14.231 25.139 hybrid contribution -0.538 1.404 0.819 1.712 sum 8.335 -17.324 15.050 24.415 Atomic orbital electron populations 1.70222 1.06418 1.24856 1.58856 1.25657 0.96511 1.01137 1.03096 0.85035 0.78522 0.79643 0.76332 1.18339 1.22232 1.22624 1.19504 0.91129 0.83511 1.41956 0.89379 1.44520 1.02039 1.01494 1.86871 1.20741 0.84311 0.90204 0.97448 1.23010 0.95460 0.96657 0.98044 0.86438 1.21815 0.94226 0.99394 0.84761 1.48188 1.09964 1.63368 1.10312 1.17991 0.86874 0.77738 0.81761 1.90753 1.16106 1.56595 1.82454 1.20598 0.91126 1.02423 0.92948 1.22043 1.02030 0.93851 0.91654 1.20333 0.95199 1.02436 0.93900 1.18149 0.85740 0.76417 0.84754 1.43440 1.11131 1.68941 1.14566 1.90856 1.17639 1.54788 1.82829 1.23121 0.93692 0.93822 0.99766 1.23787 1.01507 0.92697 0.87973 1.67739 1.01918 1.10561 1.35880 1.22310 0.79557 1.03054 0.94141 1.23128 0.94146 1.00051 0.94547 0.84814 1.21372 0.94861 0.83746 0.98373 0.94807 0.97671 0.97742 0.89919 0.93880 0.85095 0.74433 0.74832 0.77949 0.76696 0.93491 0.86462 0.93163 0.95013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.81 10.25 21.65 0.22 -58.59 16 2 C -0.07 -4.10 5.48 84.86 0.47 -3.64 16 3 Si 0.98 46.14 29.55 68.60 2.03 48.17 16 4 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 5 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 6 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 7 C -0.23 -12.75 10.25 84.03 0.86 -11.89 16 8 H 0.09 4.55 7.83 -2.91 -0.02 4.53 16 9 N -0.62 -31.06 3.37 -697.90 -2.35 -33.41 16 10 C 0.20 9.84 4.75 86.59 0.41 10.25 16 11 C -0.11 -4.04 4.02 -9.49 -0.04 -4.07 16 12 H 0.12 3.64 8.14 -2.39 -0.02 3.62 16 13 C 0.12 4.43 6.23 86.59 0.54 4.97 16 14 N -0.59 -21.21 3.31 -820.06 -2.72 -23.93 16 15 C 0.57 21.33 7.83 86.88 0.68 22.01 16 16 O -0.58 -25.36 16.63 -3.77 -0.06 -25.42 16 17 C 0.06 1.94 6.72 41.90 0.28 2.22 16 18 C -0.07 -2.04 9.20 22.88 0.21 -1.83 16 19 C -0.11 -1.96 5.91 -19.90 -0.12 -2.07 16 20 C 0.56 10.28 8.07 86.88 0.70 10.98 16 21 N -0.82 -4.83 8.83 -175.40 -1.55 -6.38 16 22 O -0.58 -17.06 17.28 -3.75 -0.06 -17.12 16 23 C -0.08 -0.72 9.62 22.71 0.22 -0.50 16 24 C 0.10 1.24 11.17 84.81 0.95 2.19 16 25 N -0.45 -10.49 6.63 -185.08 -1.23 -11.71 16 26 C 0.13 4.16 4.96 86.72 0.43 4.59 16 27 C -0.10 -3.02 4.19 -9.26 -0.04 -3.06 16 28 H 0.13 3.00 8.14 -2.39 -0.02 2.98 16 29 C 0.14 5.23 6.37 86.64 0.55 5.78 16 30 H 0.24 14.70 8.31 -92.71 -0.77 13.93 16 31 H 0.01 0.29 7.45 -2.39 -0.02 0.27 16 32 H 0.00 0.26 6.51 -2.39 -0.02 0.24 16 33 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 34 H 0.04 1.85 7.44 -2.39 -0.02 1.83 16 35 H 0.13 4.32 7.33 -2.91 -0.02 4.30 16 36 H 0.42 -1.06 6.97 -92.71 -0.65 -1.70 16 37 H 0.42 1.65 8.93 -92.71 -0.83 0.83 16 38 H 0.20 -0.74 6.53 -2.91 -0.02 -0.76 16 39 H 0.22 0.75 8.06 -2.91 -0.02 0.73 16 40 H 0.05 1.81 7.72 -2.38 -0.02 1.79 16 41 H 0.12 3.05 6.18 -2.39 -0.01 3.04 16 42 H 0.05 1.75 7.94 -2.39 -0.02 1.73 16 43 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 Total: -1.00 -88.84 351.69 -0.01 -88.85 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -0.39 Total: 3.60 kcal Atomic # 6 Polarization: 29.84 SS G_CDS: 6.10 Total: 35.94 kcal Atomic # 7 Polarization: -126.39 SS G_CDS: -7.62 Total: -134.02 kcal Atomic # 8 Polarization: -42.42 SS G_CDS: -0.13 Total: -42.54 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -88.84 -0.01 -88.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049255805.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.211 kcal (2) G-P(sol) polarization free energy of solvation -88.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds