Wall clock time and date at job start Tue Mar 31 2020 04:52:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99731 * 2 1 4 4 H 1.48495 * 109.47251 * 270.00405 * 3 2 1 5 5 H 1.48504 * 109.47033 * 30.00542 * 3 2 1 6 6 H 1.48505 * 109.46730 * 150.00199 * 3 2 1 7 7 C 1.38812 * 120.00470 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00057 * 190.42357 * 7 2 1 9 9 N 1.36936 * 119.99769 * 10.41761 * 7 2 1 10 10 C 1.47355 * 121.30606 * 29.27349 * 9 7 2 11 11 C 1.53194 * 108.79678 * 129.73642 * 10 9 7 12 12 O 1.43140 * 109.74234 * 51.21315 * 11 10 9 13 13 C 1.42599 * 113.63615 * 298.30977 * 12 11 10 14 14 H 1.09008 * 108.96509 * 304.14670 * 13 12 11 15 15 C 1.52786 * 111.11469 * 183.60700 * 13 12 11 16 16 C 1.53365 * 108.81813 * 177.47208 * 15 13 12 17 17 N 1.46843 * 109.25013 * 53.83931 * 16 15 13 18 18 C 1.34778 * 120.41287 * 127.76448 * 17 16 15 19 19 O 1.21278 * 119.99610 * 176.36533 * 18 17 16 20 20 C 1.50701 * 119.99968 * 356.36292 * 18 17 16 21 21 C 1.53007 * 115.54741 * 62.95813 * 20 18 17 22 22 F 1.39902 * 109.46904 * 61.58161 * 21 20 18 23 23 F 1.39899 * 109.46767 * 181.58078 * 21 20 18 24 24 C 1.52994 * 117.49993 * 277.24953 * 20 18 17 25 25 C 1.52997 * 117.49807 * 208.62459 * 20 18 17 26 26 C 1.47135 * 119.17417 * 307.74933 * 17 16 15 27 27 C 1.46870 * 121.30577 * 209.25314 * 9 7 2 28 28 H 1.09001 * 110.20328 * 112.05243 * 27 9 7 29 29 H 0.96994 * 120.00043 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.58240 * 249.52737 * 10 9 7 31 31 H 1.08996 * 109.57896 * 9.94397 * 10 9 7 32 32 H 1.09000 * 109.42764 * 171.29749 * 11 10 9 33 33 H 1.09007 * 109.42601 * 291.18439 * 11 10 9 34 34 H 1.09003 * 109.58065 * 297.27274 * 15 13 12 35 35 H 1.09003 * 109.58153 * 57.67279 * 15 13 12 36 36 H 1.08993 * 109.51158 * 293.90417 * 16 15 13 37 37 H 1.09008 * 109.54192 * 173.78905 * 16 15 13 38 38 H 1.08998 * 109.47134 * 301.58229 * 21 20 18 39 39 H 1.08999 * 117.50011 * 359.97438 * 24 20 18 40 40 H 1.08999 * 117.50107 * 145.02210 * 24 20 18 41 41 H 1.09000 * 117.49945 * 214.98282 * 25 20 18 42 42 H 1.09001 * 117.50007 * 0.02562 * 25 20 18 43 43 H 1.09001 * 109.72118 * 293.56273 * 26 17 16 44 44 H 1.08998 * 109.72241 * 172.89935 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0770 -1.2098 0.1687 9 7 1.3427 -2.3781 -0.2155 10 6 0.1224 -2.4262 -1.0402 11 6 0.2722 -3.5423 -2.0788 12 8 0.6580 -4.7583 -1.4296 13 6 1.9152 -4.6758 -0.7617 14 1 2.6755 -4.3589 -1.4756 15 6 2.3115 -6.0258 -0.1661 16 6 3.6951 -5.8935 0.4822 17 7 3.6778 -4.7779 1.4368 18 6 4.0949 -4.9590 2.7055 19 8 4.1398 -4.0179 3.4693 20 6 4.5056 -6.3308 3.1751 21 6 5.7170 -6.9367 2.4634 22 9 6.8372 -6.1266 2.6781 23 9 5.9633 -8.2171 2.9703 24 6 3.3969 -7.2862 3.6209 25 6 4.3246 -6.6528 4.6598 26 6 3.1996 -3.4597 0.9910 27 6 1.8149 -3.6412 0.3665 28 1 1.1142 -3.9917 1.1243 29 1 -0.4850 0.8400 0.0004 30 1 -0.7397 -2.6311 -0.4055 31 1 -0.0134 -1.4710 -1.5474 32 1 -0.6783 -3.6906 -2.5912 33 1 1.0355 -3.2619 -2.8048 34 1 1.5817 -6.3210 0.5878 35 1 2.3483 -6.7767 -0.9554 36 1 4.4414 -5.7014 -0.2886 37 1 3.9422 -6.8170 1.0060 38 1 5.5152 -7.0018 1.3942 39 1 2.3704 -6.9223 3.5750 40 1 3.5302 -8.3466 3.4072 41 1 5.0682 -7.2966 5.1295 42 1 3.9080 -5.8726 5.2969 43 1 3.8866 -3.0505 0.2502 44 1 3.1330 -2.7847 1.8442 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074241019.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:01 Heat of formation + Delta-G solvation = -113.325797 kcal Electronic energy + Delta-G solvation = -30542.200215 eV Core-core repulsion = 26132.484738 eV Total energy + Delta-G solvation = -4409.715477 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.154 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.26559 -47.24314 -40.54749 -38.90574 -36.77579 -36.15708 -34.75191 -31.90843 -31.47871 -30.06215 -28.08433 -26.98034 -25.61609 -24.05830 -23.06252 -22.85346 -21.99803 -20.97220 -19.77452 -19.24251 -17.96059 -17.50017 -17.36450 -16.84362 -16.26370 -15.73292 -15.46482 -15.27102 -15.06932 -14.54630 -14.51170 -14.02482 -13.98856 -13.82629 -13.63149 -13.51902 -13.18671 -13.11471 -12.89225 -12.73102 -12.52787 -12.10290 -11.83462 -11.76350 -11.42716 -11.10814 -11.04203 -10.96503 -10.85145 -10.65354 -10.63791 -10.32155 -10.23759 -10.07443 -9.79582 -9.66636 -9.05438 -8.59546 -8.50584 -6.76299 -5.88013 -3.37602 2.40872 2.82312 3.07502 3.32986 3.40519 3.41792 3.51213 3.86838 4.00456 4.18109 4.24789 4.35423 4.38595 4.67709 4.76591 4.89652 5.03374 5.18859 5.22127 5.29331 5.31742 5.33136 5.39550 5.58428 5.59533 5.66329 5.80342 5.81371 5.83957 6.03382 6.07129 6.17294 6.27345 6.38449 6.53520 6.59293 6.78868 7.08534 7.40848 7.48671 7.66288 7.83442 8.15517 8.29384 9.05874 9.67666 10.25567 11.19545 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015300 B = 0.004107 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.572824 B = 6815.425926 C = 7885.589674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.009 3.991 3 Si 0.905 3.095 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.260 4.260 8 H 0.072 0.928 9 N -0.587 5.587 10 C 0.142 3.858 11 C 0.039 3.961 12 O -0.389 6.389 13 C 0.076 3.924 14 H 0.053 0.947 15 C -0.122 4.122 16 C 0.103 3.897 17 N -0.604 5.604 18 C 0.556 3.444 19 O -0.518 6.518 20 C -0.234 4.234 21 C 0.301 3.699 22 F -0.194 7.194 23 F -0.198 7.198 24 C -0.136 4.136 25 C -0.126 4.126 26 C 0.124 3.876 27 C 0.138 3.862 28 H 0.037 0.963 29 H 0.256 0.744 30 H 0.028 0.972 31 H 0.098 0.902 32 H 0.081 0.919 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.123 0.877 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.075 0.925 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.035 -17.104 0.919 18.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.190 4.190 3 Si 0.735 3.265 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.389 4.389 8 H 0.089 0.911 9 N -0.312 5.312 10 C 0.017 3.983 11 C -0.039 4.039 12 O -0.309 6.309 13 C 0.016 3.984 14 H 0.071 0.929 15 C -0.161 4.161 16 C -0.020 4.020 17 N -0.338 5.338 18 C 0.341 3.659 19 O -0.393 6.393 20 C -0.238 4.238 21 C 0.247 3.753 22 F -0.175 7.175 23 F -0.179 7.179 24 C -0.173 4.173 25 C -0.163 4.163 26 C 0.003 3.997 27 C 0.030 3.970 28 H 0.054 0.946 29 H 0.066 0.934 30 H 0.046 0.954 31 H 0.116 0.884 32 H 0.100 0.900 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.140 0.860 39 H 0.130 0.870 40 H 0.132 0.868 41 H 0.128 0.872 42 H 0.133 0.867 43 H 0.093 0.907 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.875 -16.563 1.354 17.984 hybrid contribution 0.564 1.128 -0.104 1.266 sum 7.439 -15.435 1.250 17.179 Atomic orbital electron populations 1.69965 1.05299 1.25737 1.53643 1.25144 0.95425 0.98461 0.99977 0.86242 0.79211 0.83348 0.77720 1.21305 1.21536 1.20191 1.19136 0.91025 0.83400 1.45341 0.91085 1.43991 1.29459 1.02312 1.55415 1.21475 0.88251 0.97199 0.91368 1.23360 0.98777 0.86073 0.95701 1.87733 1.37313 1.35296 1.70511 1.22430 0.86413 0.94786 0.94733 0.92939 1.21824 0.96032 0.97582 1.00682 1.21911 0.98072 0.89531 0.92464 1.48209 1.63588 1.12179 1.09799 1.18891 0.77559 0.87627 0.81790 1.90740 1.53078 1.41581 1.53880 1.22530 1.00492 0.97868 1.02959 1.21352 0.81692 0.73618 0.98652 1.93037 1.54688 1.73330 1.96471 1.92979 1.94880 1.40230 1.89854 1.23169 0.95250 0.97868 1.01044 1.23061 1.01824 1.02640 0.88791 1.21842 0.95011 0.81840 1.01004 1.21280 0.93692 0.88838 0.93197 0.94572 0.93405 0.95415 0.88385 0.90041 0.94124 0.90615 0.90023 0.90755 0.89744 0.86045 0.86997 0.86781 0.87171 0.86699 0.90662 0.87833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.46 11.00 55.49 0.61 -24.85 16 2 C 0.01 0.25 5.09 -17.43 -0.09 0.16 16 3 Si 0.91 21.37 29.57 -169.99 -5.03 16.34 16 4 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.26 -6.81 8.85 -15.06 -0.13 -6.94 16 8 H 0.07 1.82 6.30 -52.49 -0.33 1.49 16 9 N -0.59 -14.18 3.04 -164.36 -0.50 -14.68 16 10 C 0.14 3.31 5.39 -3.47 -0.02 3.30 16 11 C 0.04 0.73 6.95 37.26 0.26 0.99 16 12 O -0.39 -7.31 10.49 -35.23 -0.37 -7.68 16 13 C 0.08 1.30 2.48 -26.63 -0.07 1.23 16 14 H 0.05 0.91 8.13 -51.92 -0.42 0.49 16 15 C -0.12 -1.52 5.82 -26.65 -0.16 -1.67 16 16 C 0.10 1.12 5.31 -3.67 -0.02 1.10 16 17 N -0.60 -9.03 2.98 -172.68 -0.51 -9.55 16 18 C 0.56 8.70 6.93 -10.98 -0.08 8.62 16 19 O -0.52 -10.36 16.05 5.56 0.09 -10.27 16 20 C -0.23 -2.68 1.17 -155.66 -0.18 -2.87 16 21 C 0.30 3.05 4.86 37.16 0.18 3.23 16 22 F -0.19 -2.52 17.26 2.25 0.04 -2.49 16 23 F -0.20 -1.94 15.91 2.25 0.04 -1.90 16 24 C -0.14 -1.20 9.41 -26.73 -0.25 -1.45 16 25 C -0.13 -1.30 9.49 -26.73 -0.25 -1.56 16 26 C 0.12 2.34 4.49 -3.70 -0.02 2.32 16 27 C 0.14 2.81 3.02 -67.53 -0.20 2.60 16 28 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.10 2.49 6.20 -51.93 -0.32 2.17 16 32 H 0.08 1.36 8.14 -51.93 -0.42 0.93 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.67 4.40 -51.92 -0.23 0.45 16 38 H 0.12 0.91 5.42 -51.93 -0.28 0.63 16 39 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.11 0.76 7.73 -51.93 -0.40 0.36 16 41 H 0.11 0.98 7.83 -51.93 -0.41 0.58 16 42 H 0.11 1.32 7.95 -51.93 -0.41 0.91 16 43 H 0.08 1.42 7.36 -51.93 -0.38 1.04 16 44 H 0.10 2.29 6.84 -51.93 -0.35 1.94 16 LS Contribution 348.49 15.07 5.25 5.25 Total: -1.00 -31.68 348.49 -7.47 -39.15 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -6.06 Total: 1.61 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -1.03 Total: 9.07 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: -0.40 Total: -49.07 kcal Atomic # 8 Polarization: -17.68 SS G_CDS: -0.28 Total: -17.96 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.07 Total: -4.39 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.03 Total: 16.34 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.68 -7.47 -39.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074241019.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.180 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds