Wall clock time and date at job start Tue Mar 31 2020 04:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86805 * 119.99731 * 2 1 4 4 H 1.48495 * 109.47251 * 270.00405 * 3 2 1 5 5 H 1.48504 * 109.47033 * 30.00542 * 3 2 1 6 6 H 1.48505 * 109.46730 * 150.00199 * 3 2 1 7 7 C 1.38812 * 120.00470 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00057 * 190.42357 * 7 2 1 9 9 N 1.36936 * 119.99769 * 10.41761 * 7 2 1 10 10 C 1.47355 * 121.30606 * 29.27349 * 9 7 2 11 11 C 1.53194 * 108.79678 * 129.73642 * 10 9 7 12 12 O 1.43140 * 109.74234 * 51.21315 * 11 10 9 13 13 C 1.42599 * 113.63615 * 298.30977 * 12 11 10 14 14 H 1.09008 * 108.96509 * 304.14670 * 13 12 11 15 15 C 1.52786 * 111.11469 * 183.60700 * 13 12 11 16 16 C 1.53365 * 108.81813 * 177.47208 * 15 13 12 17 17 N 1.46843 * 109.25013 * 53.83931 * 16 15 13 18 18 C 1.34778 * 120.41287 * 127.76448 * 17 16 15 19 19 O 1.21278 * 119.99610 * 176.36533 * 18 17 16 20 20 C 1.50701 * 119.99968 * 356.36292 * 18 17 16 21 21 C 1.53007 * 115.54741 * 62.95813 * 20 18 17 22 22 F 1.39902 * 109.46904 * 61.58161 * 21 20 18 23 23 F 1.39899 * 109.46767 * 181.58078 * 21 20 18 24 24 C 1.52994 * 117.49993 * 277.24953 * 20 18 17 25 25 C 1.52997 * 117.49807 * 208.62459 * 20 18 17 26 26 C 1.47135 * 119.17417 * 307.74933 * 17 16 15 27 27 C 1.46870 * 121.30577 * 209.25314 * 9 7 2 28 28 H 1.09001 * 110.20328 * 112.05243 * 27 9 7 29 29 H 0.96994 * 120.00043 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.58240 * 249.52737 * 10 9 7 31 31 H 1.08996 * 109.57896 * 9.94397 * 10 9 7 32 32 H 1.09000 * 109.42764 * 171.29749 * 11 10 9 33 33 H 1.09007 * 109.42601 * 291.18439 * 11 10 9 34 34 H 1.09003 * 109.58065 * 297.27274 * 15 13 12 35 35 H 1.09003 * 109.58153 * 57.67279 * 15 13 12 36 36 H 1.08993 * 109.51158 * 293.90417 * 16 15 13 37 37 H 1.09008 * 109.54192 * 173.78905 * 16 15 13 38 38 H 1.08998 * 109.47134 * 301.58229 * 21 20 18 39 39 H 1.08999 * 117.50011 * 359.97438 * 24 20 18 40 40 H 1.08999 * 117.50107 * 145.02210 * 24 20 18 41 41 H 1.09000 * 117.49945 * 214.98282 * 25 20 18 42 42 H 1.09001 * 117.50007 * 0.02562 * 25 20 18 43 43 H 1.09001 * 109.72118 * 293.56273 * 26 17 16 44 44 H 1.08998 * 109.72241 * 172.89935 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6527 0.7002 6 1 3.5478 1.4402 0.7000 7 6 2.0104 -1.2021 -0.0005 8 1 3.0770 -1.2098 0.1687 9 7 1.3427 -2.3781 -0.2155 10 6 0.1224 -2.4262 -1.0402 11 6 0.2722 -3.5423 -2.0788 12 8 0.6580 -4.7583 -1.4296 13 6 1.9152 -4.6758 -0.7617 14 1 2.6755 -4.3589 -1.4756 15 6 2.3115 -6.0258 -0.1661 16 6 3.6951 -5.8935 0.4822 17 7 3.6778 -4.7779 1.4368 18 6 4.0949 -4.9590 2.7055 19 8 4.1398 -4.0179 3.4693 20 6 4.5056 -6.3308 3.1751 21 6 5.7170 -6.9367 2.4634 22 9 6.8372 -6.1266 2.6781 23 9 5.9633 -8.2171 2.9703 24 6 3.3969 -7.2862 3.6209 25 6 4.3246 -6.6528 4.6598 26 6 3.1996 -3.4597 0.9910 27 6 1.8149 -3.6412 0.3665 28 1 1.1142 -3.9917 1.1243 29 1 -0.4850 0.8400 0.0004 30 1 -0.7397 -2.6311 -0.4055 31 1 -0.0134 -1.4710 -1.5474 32 1 -0.6783 -3.6906 -2.5912 33 1 1.0355 -3.2619 -2.8048 34 1 1.5817 -6.3210 0.5878 35 1 2.3483 -6.7767 -0.9554 36 1 4.4414 -5.7014 -0.2886 37 1 3.9422 -6.8170 1.0060 38 1 5.5152 -7.0018 1.3942 39 1 2.3704 -6.9223 3.5750 40 1 3.5302 -8.3466 3.4072 41 1 5.0682 -7.2966 5.1295 42 1 3.9080 -5.8726 5.2969 43 1 3.8866 -3.0505 0.2502 44 1 3.1330 -2.7847 1.8442 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074241019.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:00 Heat of formation + Delta-G solvation = -134.357631 kcal Electronic energy + Delta-G solvation = -30543.112224 eV Core-core repulsion = 26132.484738 eV Total energy + Delta-G solvation = -4410.627485 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.154 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.06823 -48.06517 -41.78694 -40.33152 -37.82954 -37.44537 -36.53700 -33.53163 -33.02392 -31.55610 -29.34076 -28.40237 -27.02678 -25.59503 -24.37768 -23.63069 -23.39029 -22.33275 -21.38744 -20.29527 -18.99878 -18.71241 -18.30377 -18.18875 -17.56118 -17.11248 -16.89941 -16.72178 -16.37414 -16.12587 -15.66204 -15.45158 -15.35598 -14.94501 -14.71375 -14.70119 -14.59342 -14.38348 -14.20414 -13.96094 -13.68736 -13.43433 -13.00816 -12.89777 -12.82440 -12.65673 -12.56312 -12.42533 -12.32558 -12.08758 -11.95638 -11.77975 -11.76514 -11.43250 -11.26895 -11.02602 -10.74376 -10.55798 -9.83141 -8.73503 -7.93396 -5.45619 1.25721 1.42287 1.44112 1.52075 1.64885 2.23325 2.43400 2.67883 2.84724 3.06006 3.13712 3.22742 3.34203 3.43409 3.59125 3.79872 3.85816 3.96375 4.02556 4.09321 4.17510 4.21375 4.37956 4.43646 4.48521 4.53833 4.56039 4.59229 4.60827 4.77201 4.84558 4.85826 4.98262 5.06181 5.07661 5.12867 5.26321 5.37261 5.55000 5.59016 6.22186 6.24802 6.34083 6.93732 7.03415 7.69739 8.24914 9.11929 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.015300 B = 0.004107 C = 0.003550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1829.572824 B = 6815.425926 C = 7885.589674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.044 4.044 3 Si 0.965 3.035 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.274 1.274 7 C -0.261 4.261 8 H 0.073 0.927 9 N -0.606 5.606 10 C 0.146 3.854 11 C 0.052 3.948 12 O -0.390 6.390 13 C 0.079 3.921 14 H 0.057 0.943 15 C -0.113 4.113 16 C 0.098 3.902 17 N -0.601 5.601 18 C 0.550 3.450 19 O -0.576 6.576 20 C -0.245 4.245 21 C 0.304 3.696 22 F -0.214 7.214 23 F -0.192 7.192 24 C -0.106 4.106 25 C -0.136 4.136 26 C 0.139 3.861 27 C 0.135 3.865 28 H 0.008 0.992 29 H 0.251 0.749 30 H -0.004 1.004 31 H 0.072 0.928 32 H 0.108 0.892 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.124 0.876 38 H 0.157 0.843 39 H 0.107 0.893 40 H 0.150 0.850 41 H 0.127 0.873 42 H 0.093 0.907 43 H 0.074 0.926 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.547 -20.592 -0.477 22.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.240 4.240 3 Si 0.793 3.207 4 H -0.204 1.204 5 H -0.222 1.222 6 H -0.199 1.199 7 C -0.391 4.391 8 H 0.091 0.909 9 N -0.331 5.331 10 C 0.021 3.979 11 C -0.025 4.025 12 O -0.309 6.309 13 C 0.020 3.980 14 H 0.075 0.925 15 C -0.152 4.152 16 C -0.023 4.023 17 N -0.334 5.334 18 C 0.338 3.662 19 O -0.455 6.455 20 C -0.250 4.250 21 C 0.251 3.749 22 F -0.195 7.195 23 F -0.173 7.173 24 C -0.143 4.143 25 C -0.174 4.174 26 C 0.016 3.984 27 C 0.028 3.972 28 H 0.025 0.975 29 H 0.060 0.940 30 H 0.014 0.986 31 H 0.090 0.910 32 H 0.126 0.874 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.138 0.862 36 H 0.119 0.881 37 H 0.141 0.859 38 H 0.174 0.826 39 H 0.125 0.875 40 H 0.167 0.833 41 H 0.146 0.854 42 H 0.111 0.889 43 H 0.093 0.907 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 8.405 -20.117 -0.070 21.802 hybrid contribution 0.066 2.193 0.416 2.233 sum 8.471 -17.924 0.346 19.828 Atomic orbital electron populations 1.70124 1.06562 1.25928 1.55443 1.25858 0.96154 1.01395 1.00611 0.85302 0.77898 0.79632 0.77851 1.20369 1.22208 1.19872 1.19421 0.91355 0.84442 1.43857 0.90943 1.44273 1.29491 1.03190 1.56112 1.21327 0.87049 0.97833 0.91710 1.23176 1.00578 0.84615 0.94174 1.87744 1.38234 1.34545 1.70421 1.22542 0.85914 0.96401 0.93167 0.92463 1.21859 0.96492 0.95287 1.01533 1.22337 0.98044 0.89414 0.92534 1.48250 1.62761 1.11733 1.10610 1.19635 0.76427 0.88851 0.81250 1.90713 1.55438 1.43930 1.55390 1.22430 1.02656 0.96035 1.03839 1.21581 0.80108 0.73258 1.00003 1.93006 1.55774 1.74103 1.96652 1.92994 1.94724 1.39540 1.90007 1.23335 0.94050 0.98869 0.98059 1.23125 1.03113 1.02747 0.88379 1.21331 0.94424 0.83709 0.98934 1.21429 0.93424 0.88254 0.94096 0.97475 0.93951 0.98589 0.91021 0.87363 0.93233 0.90881 0.86192 0.88138 0.85852 0.82594 0.87470 0.83256 0.85445 0.88876 0.90749 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.13 11.00 21.65 0.24 -54.89 16 2 C -0.04 -2.48 5.09 84.86 0.43 -2.04 16 3 Si 0.97 45.26 29.57 68.60 2.03 47.29 16 4 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 5 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 6 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.26 -14.16 8.85 84.03 0.74 -13.42 16 8 H 0.07 3.83 6.30 -2.91 -0.02 3.81 16 9 N -0.61 -30.25 3.04 -673.91 -2.05 -32.30 16 10 C 0.15 7.04 5.39 86.28 0.47 7.51 16 11 C 0.05 1.93 6.95 72.05 0.50 2.43 16 12 O -0.39 -13.83 10.49 -148.98 -1.56 -15.39 16 13 C 0.08 2.53 2.48 30.66 0.08 2.61 16 14 H 0.06 1.82 8.13 -2.38 -0.02 1.80 16 15 C -0.11 -2.33 5.82 30.65 0.18 -2.15 16 16 C 0.10 1.69 5.31 86.44 0.46 2.15 16 17 N -0.60 -17.28 2.98 -818.64 -2.44 -19.72 16 18 C 0.55 17.05 6.93 87.66 0.61 17.65 16 19 O -0.58 -24.19 16.05 -3.02 -0.05 -24.24 16 20 C -0.25 -5.04 1.17 -52.93 -0.06 -5.10 16 21 C 0.30 5.00 4.86 71.98 0.35 5.35 16 22 F -0.21 -5.10 17.26 44.97 0.78 -4.32 16 23 F -0.19 -2.88 15.91 44.97 0.72 -2.17 16 24 C -0.11 -1.51 9.41 30.59 0.29 -1.22 16 25 C -0.14 -2.61 9.49 30.59 0.29 -2.32 16 26 C 0.14 5.38 4.49 86.25 0.39 5.76 16 27 C 0.14 5.60 3.02 45.05 0.14 5.74 16 28 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 30 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 31 H 0.07 3.81 6.20 -2.39 -0.01 3.79 16 32 H 0.11 3.40 8.14 -2.39 -0.02 3.39 16 33 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 34 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.10 1.34 8.14 -2.39 -0.02 1.33 16 37 H 0.12 1.23 4.40 -2.38 -0.01 1.22 16 38 H 0.16 1.46 5.42 -2.39 -0.01 1.45 16 39 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.15 1.14 7.73 -2.39 -0.02 1.12 16 41 H 0.13 1.97 7.83 -2.39 -0.02 1.96 16 42 H 0.09 2.20 7.95 -2.39 -0.02 2.18 16 43 H 0.07 2.85 7.36 -2.39 -0.02 2.84 16 44 H 0.06 2.81 6.84 -2.39 -0.02 2.79 16 Total: -1.00 -75.27 348.49 3.54 -71.73 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: 1.03 Total: 11.06 kcal Atomic # 6 Polarization: 18.10 SS G_CDS: 4.85 Total: 22.95 kcal Atomic # 7 Polarization: -102.66 SS G_CDS: -4.25 Total: -106.91 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -1.61 Total: -39.63 kcal Atomic # 9 Polarization: -7.98 SS G_CDS: 1.49 Total: -6.49 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -75.27 3.54 -71.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074241019.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.627 kcal (2) G-P(sol) polarization free energy of solvation -75.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds