Wall clock time and date at job start Tue Mar 31 2020 04:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86801 * 119.99739 * 2 1 4 4 H 1.48493 * 109.46920 * 239.99793 * 3 2 1 5 5 H 1.48499 * 109.47150 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46883 * 120.00135 * 3 2 1 7 7 C 1.38809 * 119.99820 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99623 * 162.91388 * 7 2 1 9 9 N 1.36941 * 120.00212 * 342.63241 * 7 2 1 10 10 C 1.47171 * 121.22323 * 334.58277 * 9 7 2 11 11 C 1.52800 * 108.92954 * 230.90566 * 10 9 7 12 12 O 1.43074 * 109.52025 * 308.66287 * 11 10 9 13 13 C 1.42694 * 113.87046 * 61.50963 * 12 11 10 14 14 H 1.08998 * 108.38195 * 55.27481 * 13 12 11 15 15 C 1.52691 * 109.79865 * 175.29747 * 13 12 11 16 16 C 1.53158 * 110.64770 * 62.26958 * 15 13 12 17 17 N 1.46984 * 108.44756 * 54.00989 * 16 15 13 18 18 C 1.34774 * 120.72057 * 125.48029 * 17 16 15 19 19 O 1.21280 * 119.99991 * 182.46940 * 18 17 16 20 20 C 1.50703 * 119.99895 * 2.47488 * 18 17 16 21 21 C 1.52994 * 115.55014 * 58.54704 * 20 18 17 22 22 F 1.39902 * 109.47540 * 54.53475 * 21 20 18 23 23 F 1.39903 * 109.47068 * 174.53686 * 21 20 18 24 24 C 1.53003 * 117.49628 * 272.83408 * 20 18 17 25 25 C 1.53000 * 59.99955 * 252.51501 * 24 20 18 26 26 C 1.46793 * 118.55502 * 305.46076 * 17 16 15 27 27 C 1.47588 * 121.22330 * 154.86717 * 9 7 2 28 28 H 1.09000 * 110.31375 * 7.68228 * 27 9 7 29 29 H 0.96997 * 119.99921 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.60027 * 350.73012 * 10 9 7 31 31 H 1.09001 * 109.59723 * 111.19759 * 10 9 7 32 32 H 1.08992 * 109.55304 * 188.57514 * 11 10 9 33 33 H 1.09008 * 109.33420 * 68.60759 * 11 10 9 34 34 H 1.09007 * 109.39476 * 301.65586 * 15 13 12 35 35 H 1.08993 * 108.52323 * 182.33378 * 15 13 12 36 36 H 1.09006 * 109.63984 * 294.32086 * 16 15 13 37 37 H 1.09002 * 109.63997 * 173.70023 * 16 15 13 38 38 H 1.09004 * 109.47322 * 294.53514 * 21 20 18 39 39 H 1.08995 * 117.49579 * 0.02562 * 24 20 18 40 40 H 1.08996 * 117.49151 * 145.02317 * 24 20 18 41 41 H 1.09005 * 117.49889 * 252.51215 * 25 24 20 42 42 H 1.08996 * 117.49952 * 107.49321 * 25 24 20 43 43 H 1.09004 * 109.52706 * 294.39272 * 26 17 16 44 44 H 1.09000 * 109.57681 * 174.23328 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6964 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0545 -1.2226 -0.2754 9 7 1.3724 -2.3612 0.3529 10 6 0.1947 -2.3453 1.2354 11 6 0.4130 -3.3435 2.3715 12 8 0.7904 -4.6118 1.8276 13 6 2.0108 -4.5832 1.0887 14 1 2.7917 -4.1752 1.7303 15 6 2.3843 -5.9979 0.6521 16 6 1.3144 -6.5760 -0.2789 17 7 1.1084 -5.6368 -1.3906 18 6 1.2184 -6.0485 -2.6692 19 8 1.0900 -5.2531 -3.5756 20 6 1.5007 -7.4975 -2.9725 21 6 0.4779 -8.4969 -2.4289 22 9 -0.8008 -8.1441 -2.8735 23 9 0.7926 -9.7813 -2.8857 24 6 2.9654 -7.9377 -3.0158 25 6 2.1626 -7.8225 -4.3131 26 6 0.7799 -4.2407 -1.0779 27 6 1.8444 -3.6728 -0.1320 28 1 2.7947 -3.5634 -0.6545 29 1 -0.4850 0.8400 0.0004 30 1 0.0612 -1.3457 1.6491 31 1 -0.6913 -2.6299 0.6678 32 1 -0.5085 -3.4528 2.9431 33 1 1.2051 -2.9783 3.0254 34 1 2.4815 -6.6344 1.5317 35 1 3.3384 -5.9576 0.1267 36 1 0.3814 -6.7042 0.2701 37 1 1.6486 -7.5375 -0.6687 38 1 0.5002 -8.4833 -1.3391 39 1 3.7246 -7.1794 -2.8245 40 1 3.2005 -8.9396 -2.6567 41 1 1.8695 -8.7487 -4.8076 42 1 2.3937 -6.9884 -4.9756 43 1 -0.1969 -4.1953 -0.5961 44 1 0.7601 -3.6554 -1.9973 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074241020.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:04 Heat of formation + Delta-G solvation = -113.304885 kcal Electronic energy + Delta-G solvation = -30685.813795 eV Core-core repulsion = 26276.099226 eV Total energy + Delta-G solvation = -4409.714570 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.154 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.19832 -47.18011 -40.46146 -38.95887 -36.63900 -35.87640 -34.69625 -31.86822 -31.57268 -29.74192 -28.08740 -27.19542 -25.46065 -23.96543 -23.01098 -22.86382 -22.33155 -21.35863 -19.44519 -18.52548 -17.89116 -17.41450 -17.31163 -16.96445 -16.06186 -15.70219 -15.49907 -15.26832 -15.03842 -14.59352 -14.42984 -14.14025 -13.94632 -13.85950 -13.55758 -13.43389 -13.30423 -12.97805 -12.66398 -12.55748 -12.38264 -12.13570 -11.82048 -11.75646 -11.43686 -11.12329 -11.05054 -10.85613 -10.81466 -10.70688 -10.59132 -10.30941 -10.24439 -10.03409 -9.70889 -9.65660 -9.06541 -8.65355 -8.34931 -6.82653 -5.90072 -3.33519 2.49824 2.96683 3.13526 3.33193 3.39040 3.39574 3.59522 3.93033 4.10440 4.24428 4.33529 4.38597 4.40193 4.73047 4.87479 4.95242 5.03949 5.19765 5.24218 5.29221 5.31888 5.33878 5.51535 5.61932 5.66803 5.68655 5.83961 5.90986 5.97145 6.00114 6.08993 6.22483 6.30442 6.37338 6.56397 6.67340 6.84733 7.03677 7.43837 7.58178 7.66118 7.82614 8.24027 8.29580 9.04157 9.66018 10.22422 11.17535 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.018414 B = 0.003813 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.211913 B = 7341.891945 C = 7941.378043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.007 3.993 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.289 1.289 6 H -0.283 1.283 7 C -0.258 4.258 8 H 0.069 0.931 9 N -0.584 5.584 10 C 0.136 3.864 11 C 0.040 3.960 12 O -0.389 6.389 13 C 0.081 3.919 14 H 0.056 0.944 15 C -0.121 4.121 16 C 0.106 3.894 17 N -0.599 5.599 18 C 0.553 3.447 19 O -0.525 6.525 20 C -0.232 4.232 21 C 0.300 3.700 22 F -0.194 7.194 23 F -0.200 7.200 24 C -0.137 4.137 25 C -0.127 4.127 26 C 0.107 3.893 27 C 0.134 3.866 28 H 0.073 0.927 29 H 0.257 0.743 30 H 0.097 0.903 31 H 0.028 0.972 32 H 0.081 0.919 33 H 0.041 0.959 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.123 0.877 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.115 0.885 43 H 0.071 0.929 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.328 -18.138 0.706 18.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.193 4.193 3 Si 0.736 3.264 4 H -0.207 1.207 5 H -0.215 1.215 6 H -0.210 1.210 7 C -0.387 4.387 8 H 0.087 0.913 9 N -0.306 5.306 10 C 0.010 3.990 11 C -0.038 4.038 12 O -0.308 6.308 13 C 0.022 3.978 14 H 0.074 0.926 15 C -0.159 4.159 16 C -0.017 4.017 17 N -0.332 5.332 18 C 0.339 3.661 19 O -0.401 6.401 20 C -0.237 4.237 21 C 0.247 3.753 22 F -0.175 7.175 23 F -0.181 7.181 24 C -0.174 4.174 25 C -0.165 4.165 26 C -0.016 4.016 27 C 0.026 3.974 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.115 0.885 31 H 0.046 0.954 32 H 0.099 0.901 33 H 0.059 0.941 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.140 0.860 39 H 0.129 0.871 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.133 0.867 43 H 0.089 0.911 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.990 -17.661 0.228 18.108 hybrid contribution 0.292 1.116 -0.012 1.154 sum 4.282 -16.545 0.216 17.091 Atomic orbital electron populations 1.70014 1.05258 1.25946 1.53076 1.25032 0.95333 0.98482 1.00409 0.86312 0.78912 0.83026 0.78188 1.20747 1.21504 1.20957 1.19125 0.92706 0.84270 1.42580 0.91339 1.44283 1.33322 1.00385 1.52602 1.21406 0.88955 0.98924 0.89682 1.23253 0.98869 0.84745 0.96951 1.87733 1.41000 1.31656 1.70440 1.22327 0.87229 0.94416 0.93847 0.92622 1.21793 0.98517 0.96267 0.99347 1.21840 1.00061 0.91771 0.88055 1.48228 1.68658 1.11796 1.04481 1.18888 0.77306 0.86984 0.82945 1.90726 1.49897 1.54523 1.44931 1.22561 0.97599 0.95086 1.08426 1.21373 0.78475 0.77336 0.98151 1.93037 1.40932 1.91831 1.91701 1.92972 1.92817 1.40808 1.91497 1.23128 0.89646 1.03490 1.01124 1.23069 0.99498 1.04198 0.89700 1.22405 0.99972 0.78246 1.01000 1.21584 0.96606 0.87160 0.92095 0.90839 0.93332 0.88463 0.95366 0.90065 0.94106 0.90158 0.90452 0.90253 0.90478 0.85981 0.87104 0.86961 0.87152 0.86712 0.91098 0.89079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.29 11.11 55.49 0.62 -24.67 16 2 C 0.01 0.18 4.95 -17.43 -0.09 0.10 16 3 Si 0.91 21.22 29.59 -169.99 -5.03 16.19 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.26 -6.82 9.70 -15.06 -0.15 -6.97 16 8 H 0.07 1.79 7.89 -52.49 -0.41 1.37 16 9 N -0.58 -13.89 2.71 -164.13 -0.45 -14.34 16 10 C 0.14 3.08 4.95 -3.78 -0.02 3.06 16 11 C 0.04 0.73 6.96 37.05 0.26 0.99 16 12 O -0.39 -6.84 9.71 -35.23 -0.34 -7.18 16 13 C 0.08 1.34 2.82 -26.79 -0.08 1.27 16 14 H 0.06 0.96 8.11 -51.93 -0.42 0.53 16 15 C -0.12 -1.45 5.75 -26.81 -0.15 -1.60 16 16 C 0.11 1.25 5.16 -3.70 -0.02 1.23 16 17 N -0.60 -9.45 2.96 -172.77 -0.51 -9.96 16 18 C 0.55 9.03 6.86 -10.99 -0.08 8.96 16 19 O -0.53 -10.89 15.95 5.56 0.09 -10.80 16 20 C -0.23 -2.77 1.23 -155.66 -0.19 -2.96 16 21 C 0.30 3.27 4.88 37.15 0.18 3.45 16 22 F -0.19 -2.72 17.14 2.25 0.04 -2.68 16 23 F -0.20 -2.07 15.92 2.25 0.04 -2.04 16 24 C -0.14 -1.20 9.45 -26.73 -0.25 -1.45 16 25 C -0.13 -1.35 9.46 -26.73 -0.25 -1.60 16 26 C 0.11 2.12 5.67 -3.72 -0.02 2.10 16 27 C 0.13 2.67 2.96 -67.08 -0.20 2.48 16 28 H 0.07 1.51 7.99 -51.93 -0.42 1.09 16 29 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 30 H 0.10 2.45 6.08 -51.93 -0.32 2.13 16 31 H 0.03 0.69 7.21 -51.93 -0.37 0.31 16 32 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.04 0.75 8.13 -51.92 -0.42 0.33 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.08 0.96 8.00 -51.93 -0.42 0.55 16 37 H 0.08 0.67 4.48 -51.93 -0.23 0.44 16 38 H 0.12 1.02 5.44 -51.93 -0.28 0.73 16 39 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.11 0.73 7.94 -51.93 -0.41 0.32 16 41 H 0.11 1.02 7.62 -51.93 -0.40 0.62 16 42 H 0.11 1.35 7.88 -51.93 -0.41 0.94 16 43 H 0.07 1.51 6.69 -51.93 -0.35 1.16 16 44 H 0.09 2.13 7.00 -51.93 -0.36 1.76 16 LS Contribution 348.52 15.07 5.25 5.25 Total: -1.00 -31.32 348.52 -7.40 -38.71 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -6.05 Total: 2.46 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -1.05 Total: 9.05 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: -0.34 Total: -48.97 kcal Atomic # 8 Polarization: -17.73 SS G_CDS: -0.25 Total: -17.98 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.07 Total: -4.72 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.32 -7.40 -38.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074241020.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.591 kcal (2) G-P(sol) polarization free energy of solvation -31.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds