Wall clock time and date at job start Tue Mar 31 2020 04:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99711 * 2 1 4 4 H 1.48500 * 109.46882 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47271 * 300.00026 * 3 2 1 6 6 H 1.48498 * 109.46948 * 60.00492 * 3 2 1 7 7 C 1.38805 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99749 * 221.48488 * 7 2 1 9 9 N 1.36935 * 120.00309 * 41.49381 * 7 2 1 10 10 C 1.49266 * 122.54109 * 50.17524 * 9 7 2 11 11 C 1.53229 * 109.26508 * 128.72636 * 10 9 7 12 12 O 1.43081 * 109.44502 * 51.65267 * 11 10 9 13 13 C 1.42687 * 113.87291 * 298.34991 * 12 11 10 14 14 H 1.08998 * 108.92748 * 304.41056 * 13 12 11 15 15 C 1.52504 * 110.62303 * 185.35355 * 13 12 11 16 16 C 1.52817 * 108.98765 * 300.15610 * 15 13 12 17 17 N 1.46971 * 107.93843 * 303.61245 * 16 15 13 18 18 C 1.34782 * 120.71919 * 236.15330 * 17 16 15 19 19 O 1.21286 * 119.99869 * 6.67388 * 18 17 16 20 20 C 1.50700 * 120.00189 * 186.67009 * 18 17 16 21 21 C 1.52994 * 115.54994 * 69.55600 * 20 18 17 22 22 F 1.39894 * 109.47431 * 306.64510 * 21 20 18 23 23 F 1.39904 * 109.46853 * 66.64357 * 21 20 18 24 24 C 1.53009 * 117.49657 * 283.88941 * 20 18 17 25 25 C 1.52999 * 117.49809 * 215.23151 * 20 18 17 26 26 C 1.46792 * 118.56403 * 55.87661 * 17 16 15 27 27 C 1.47603 * 121.21993 * 229.17192 * 9 7 2 28 28 H 1.09000 * 110.31339 * 353.28494 * 27 9 7 29 29 H 0.97004 * 120.00117 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.26121 * 8.82323 * 10 9 7 31 31 H 1.09007 * 109.50468 * 248.77609 * 10 9 7 32 32 H 1.08996 * 109.47450 * 291.66492 * 11 10 9 33 33 H 1.08998 * 109.48134 * 171.64881 * 11 10 9 34 34 H 1.09012 * 109.41389 * 58.80230 * 15 13 12 35 35 H 1.08996 * 109.41706 * 178.66509 * 15 13 12 36 36 H 1.09005 * 108.56732 * 184.82742 * 16 15 13 37 37 H 1.09007 * 111.20079 * 63.91525 * 16 15 13 38 38 H 1.09000 * 109.47089 * 186.64097 * 21 20 18 39 39 H 1.09003 * 117.49571 * 0.02562 * 24 20 18 40 40 H 1.08997 * 117.49362 * 145.02157 * 24 20 18 41 41 H 1.08997 * 117.49867 * 214.97738 * 25 20 18 42 42 H 1.08999 * 117.50004 * 359.97438 * 25 20 18 43 43 H 1.09004 * 109.51664 * 65.87822 * 26 17 16 44 44 H 1.08998 * 109.52336 * 186.05353 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2125 6 1 1.8914 2.3964 1.2126 7 6 2.0102 -1.2021 -0.0005 8 1 2.8870 -1.3197 0.6190 9 7 1.5833 -2.2389 -0.7867 10 6 1.2771 -2.0727 -2.2381 11 6 2.0283 -3.1416 -3.0388 12 8 1.7615 -4.4311 -2.4792 13 6 2.1968 -4.5755 -1.1280 14 1 3.2591 -4.3383 -1.0715 15 6 1.9975 -6.0099 -0.6498 16 6 0.5136 -6.3631 -0.7421 17 7 -0.2368 -5.3748 0.0453 18 6 -1.0562 -5.7666 1.0413 19 8 -1.0893 -6.9318 1.3763 20 6 -1.9310 -4.7568 1.7385 21 6 -3.0774 -4.1869 0.9010 22 9 -2.5700 -3.6782 -0.2993 23 9 -4.0014 -5.2004 0.6243 24 6 -1.2637 -3.8235 2.7508 25 6 -2.1785 -4.9509 3.2358 26 6 -0.0700 -3.9514 -0.2722 27 6 1.4217 -3.5993 -0.2374 28 1 1.7964 -3.6415 0.7853 29 1 -0.4850 0.8401 0.0004 30 1 1.5962 -1.0820 -2.5618 31 1 0.2045 -2.1820 -2.3987 32 1 3.0989 -2.9417 -2.9968 33 1 1.6950 -3.1197 -4.0764 34 1 2.5575 -6.6877 -1.2943 35 1 2.3576 -6.1036 0.3746 36 1 0.3665 -7.3569 -0.3190 37 1 0.1681 -6.3469 -1.7758 38 1 -3.5698 -3.3877 1.4551 39 1 -0.1920 -3.9395 2.9121 40 1 -1.6419 -2.8036 2.8203 41 1 -3.1580 -4.6723 3.6243 42 1 -1.7089 -5.8092 3.7165 43 1 -0.4685 -3.7510 -1.2668 44 1 -0.6037 -3.3492 0.4630 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074241022.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:09 Heat of formation + Delta-G solvation = -115.425805 kcal Electronic energy + Delta-G solvation = -31576.026721 eV Core-core repulsion = 27166.220181 eV Total energy + Delta-G solvation = -4409.806540 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 330.154 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -48.76048 -46.76048 -40.23957 -38.81006 -36.64484 -35.53380 -34.47243 -31.88690 -31.63501 -29.67392 -27.45763 -27.18172 -25.18460 -23.92018 -22.95669 -22.64589 -22.48962 -20.98630 -19.36565 -18.10578 -17.65275 -17.08341 -16.92818 -16.84074 -15.96054 -15.48389 -15.33481 -15.09978 -14.94750 -14.54506 -14.39350 -14.11657 -13.67681 -13.58720 -13.44779 -13.22824 -13.03972 -12.69048 -12.46147 -12.28955 -12.14341 -11.97424 -11.61279 -11.57693 -11.44232 -11.22664 -11.02650 -10.79988 -10.68628 -10.54249 -10.53826 -10.31964 -10.26692 -10.11268 -9.70484 -9.43153 -9.04796 -8.35287 -8.20051 -6.73950 -5.97759 -3.58589 2.71902 3.18531 3.22117 3.35519 3.40860 3.55445 3.81309 4.23076 4.28970 4.32842 4.59410 4.64028 4.66775 4.91177 5.10911 5.17484 5.25203 5.31330 5.39862 5.53531 5.59216 5.65131 5.72600 5.78986 5.90512 5.91565 5.96701 6.00141 6.06572 6.08688 6.21026 6.23710 6.33322 6.39431 6.63385 6.70520 6.83547 6.98209 7.04430 7.70830 7.79234 7.81338 8.35298 8.44376 8.88181 9.52749 10.35664 10.85177 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.011953 B = 0.005858 C = 0.004649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.023466 B = 4778.624685 C = 6020.910483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.054 3.946 3 Si 0.867 3.133 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.288 1.288 7 C -0.300 4.300 8 H 0.055 0.945 9 N -0.573 5.573 10 C 0.120 3.880 11 C 0.047 3.953 12 O -0.384 6.384 13 C 0.078 3.922 14 H 0.050 0.950 15 C -0.121 4.121 16 C 0.118 3.882 17 N -0.595 5.595 18 C 0.555 3.445 19 O -0.549 6.549 20 C -0.227 4.227 21 C 0.309 3.691 22 F -0.185 7.185 23 F -0.203 7.203 24 C -0.129 4.129 25 C -0.130 4.130 26 C 0.106 3.894 27 C 0.129 3.871 28 H 0.072 0.928 29 H 0.256 0.744 30 H 0.064 0.936 31 H 0.034 0.966 32 H 0.044 0.956 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.116 0.884 41 H 0.107 0.893 42 H 0.111 0.889 43 H 0.069 0.931 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.511 -6.819 1.549 7.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.154 4.154 3 Si 0.693 3.307 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.215 1.215 7 C -0.428 4.428 8 H 0.073 0.927 9 N -0.297 5.297 10 C -0.005 4.005 11 C -0.031 4.031 12 O -0.303 6.303 13 C 0.019 3.981 14 H 0.068 0.932 15 C -0.160 4.160 16 C -0.004 4.004 17 N -0.327 5.327 18 C 0.341 3.659 19 O -0.427 6.427 20 C -0.231 4.231 21 C 0.255 3.745 22 F -0.166 7.166 23 F -0.184 7.184 24 C -0.166 4.166 25 C -0.167 4.167 26 C -0.018 4.018 27 C 0.021 3.979 28 H 0.090 0.910 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.100 0.900 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.095 0.905 38 H 0.135 0.865 39 H 0.129 0.871 40 H 0.134 0.866 41 H 0.125 0.875 42 H 0.129 0.871 43 H 0.088 0.912 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.778 -7.419 1.576 8.078 hybrid contribution 0.418 1.371 -0.297 1.464 sum -2.360 -6.048 1.279 6.617 Atomic orbital electron populations 1.70438 1.06544 1.26665 1.43200 1.25309 0.94024 0.99685 0.96396 0.86904 0.81505 0.84697 0.77556 1.19586 1.21126 1.21481 1.18529 1.06938 0.90763 1.26552 0.92734 1.44433 1.78838 1.03478 1.02922 1.21953 0.97064 0.96633 0.84889 1.23106 0.99191 0.84190 0.96635 1.87746 1.83065 1.32870 1.26658 1.22286 0.97637 0.94694 0.83510 0.93235 1.21758 0.96654 0.95962 1.01590 1.21476 0.90555 0.92539 0.95847 1.48260 1.42630 1.09200 1.32610 1.19041 0.79703 0.87469 0.79678 1.90633 1.68382 1.18628 1.65060 1.22409 1.01483 1.05265 0.93986 1.21082 0.84728 0.86173 0.82555 1.93088 1.87543 1.87197 1.48734 1.92992 1.67404 1.63366 1.94646 1.23181 1.00446 0.96039 0.96910 1.23046 1.01953 1.01310 0.90428 1.22665 0.99277 0.77424 1.02422 1.21777 0.92275 0.87413 0.96407 0.90976 0.93398 0.91787 0.94801 0.93805 0.90035 0.90704 0.90269 0.89871 0.90544 0.86518 0.87106 0.86568 0.87457 0.87113 0.91247 0.88840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -21.73 13.90 55.49 0.77 -20.96 16 2 C 0.05 1.37 4.89 -17.43 -0.09 1.28 16 3 Si 0.87 19.49 29.69 -169.99 -5.05 14.44 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 6 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.30 -7.55 9.22 -15.06 -0.14 -7.69 16 8 H 0.06 1.42 8.06 -52.48 -0.42 1.00 16 9 N -0.57 -13.03 2.70 -162.14 -0.44 -13.47 16 10 C 0.12 2.52 5.98 -2.39 -0.01 2.50 16 11 C 0.05 0.83 6.99 37.28 0.26 1.09 16 12 O -0.38 -7.03 9.51 -35.23 -0.33 -7.37 16 13 C 0.08 1.38 2.72 -26.89 -0.07 1.31 16 14 H 0.05 0.90 8.13 -51.93 -0.42 0.48 16 15 C -0.12 -1.82 5.84 -27.08 -0.16 -1.98 16 16 C 0.12 1.92 6.21 -3.88 -0.02 1.89 16 17 N -0.60 -10.64 2.92 -172.99 -0.50 -11.15 16 18 C 0.55 10.05 6.80 -10.98 -0.07 9.97 16 19 O -0.55 -11.07 16.24 5.55 0.09 -10.98 16 20 C -0.23 -3.48 1.07 -155.66 -0.17 -3.64 16 21 C 0.31 4.63 5.07 37.15 0.19 4.82 16 22 F -0.18 -3.35 13.49 2.25 0.03 -3.32 16 23 F -0.20 -3.27 17.32 2.25 0.04 -3.23 16 24 C -0.13 -1.73 8.67 -26.69 -0.23 -1.96 16 25 C -0.13 -1.57 9.79 -26.69 -0.26 -1.84 16 26 C 0.11 2.05 3.67 -3.72 -0.01 2.04 16 27 C 0.13 2.59 2.96 -67.07 -0.20 2.39 16 28 H 0.07 1.50 7.99 -51.93 -0.42 1.09 16 29 H 0.26 6.41 8.31 -40.82 -0.34 6.07 16 30 H 0.06 1.39 7.87 -51.93 -0.41 0.98 16 31 H 0.03 0.76 7.16 -51.93 -0.37 0.39 16 32 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 35 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.08 1.33 7.01 -51.93 -0.36 0.97 16 37 H 0.08 1.26 7.89 -51.93 -0.41 0.85 16 38 H 0.12 1.34 8.08 -51.93 -0.42 0.92 16 39 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 40 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 41 H 0.11 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.11 1.38 8.07 -51.93 -0.42 0.96 16 43 H 0.07 1.50 6.04 -51.93 -0.31 1.19 16 44 H 0.09 1.92 4.49 -51.93 -0.23 1.68 16 LS Contribution 353.05 15.07 5.32 5.32 Total: -1.00 -29.28 353.05 -7.36 -36.63 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -6.29 Total: 3.87 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: -0.99 Total: 10.19 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: -0.17 Total: -45.57 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.24 Total: -18.34 kcal Atomic # 9 Polarization: -6.62 SS G_CDS: 0.07 Total: -6.55 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.05 Total: 14.44 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.28 -7.36 -36.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074241022.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.791 kcal (2) G-P(sol) polarization free energy of solvation -29.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds