Wall clock time and date at job start Tue Mar 31 2020 05:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35457 * 126.38622 * 2 1 4 4 N 1.33186 * 108.62059 * 180.02562 * 3 2 1 5 5 C 1.32650 * 109.12481 * 0.02562 * 4 3 2 6 6 C 1.40658 * 132.14975 * 180.22708 * 5 4 3 7 7 C 1.38436 * 119.08787 * 180.24793 * 6 5 4 8 8 C 1.47654 * 120.37039 * 179.75855 * 7 6 5 9 9 O 1.21583 * 119.99911 * 359.72588 * 8 7 6 10 10 N 1.34780 * 120.00043 * 179.71995 * 8 7 6 11 11 C 1.46499 * 120.00063 * 180.02562 * 10 8 7 12 12 H 1.08994 * 110.88757 * 34.30080 * 11 10 8 13 13 C 1.54906 * 111.03405 * 270.39491 * 11 10 8 14 14 N 1.47428 * 104.83099 * 204.89986 * 13 11 10 15 15 C 1.36940 * 125.65193 * 204.17516 * 14 13 11 16 16 H 1.08000 * 119.99447 * 354.82751 * 15 14 13 17 17 C 1.38805 * 119.99928 * 174.83228 * 15 14 13 18 18 N 1.31613 * 120.00339 * 7.05872 * 17 15 14 19 19 Si 1.86802 * 119.99653 * 187.06713 * 17 15 14 20 20 H 1.48501 * 109.47520 * 94.98432 * 19 17 15 21 21 H 1.48501 * 109.46920 * 214.98541 * 19 17 15 22 22 H 1.48501 * 109.47223 * 334.98395 * 19 17 15 23 23 C 1.47022 * 108.69920 * 24.13106 * 14 13 11 24 24 C 1.54319 * 107.27625 * 358.94200 * 23 14 13 25 25 H 1.08999 * 110.72212 * 96.16387 * 24 23 14 26 26 O 1.42896 * 110.87316 * 219.37406 * 24 23 14 27 27 C 1.41779 * 119.25537 * 359.48267 * 7 6 5 28 28 C 1.34535 * 120.14952 * 0.27865 * 27 7 6 29 29 N 1.36433 * 126.39477 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47089 * 269.97473 * 1 2 3 31 31 H 1.09002 * 109.46714 * 29.97669 * 1 2 3 32 32 H 1.09001 * 109.46647 * 149.96957 * 1 2 3 33 33 H 1.07997 * 125.68869 * 0.02562 * 3 2 1 34 34 H 1.07996 * 120.45408 * 359.97438 * 6 5 4 35 35 H 0.97006 * 119.99577 * 0.02562 * 10 8 7 36 36 H 1.08996 * 110.37044 * 323.74246 * 13 11 10 37 37 H 1.09006 * 110.36698 * 86.06589 * 13 11 10 38 38 H 0.97002 * 120.00203 * 179.97438 * 18 17 15 39 39 H 1.09003 * 109.88469 * 239.51953 * 23 14 13 40 40 H 1.09004 * 110.00750 * 118.42851 * 23 14 13 41 41 H 0.96697 * 113.99591 * 293.60538 * 26 24 23 42 42 H 1.07997 * 119.92426 * 180.24967 * 27 7 6 43 43 H 1.08007 * 119.52540 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3106 1.0905 0.0000 4 7 3.5789 0.6841 -0.0006 5 6 3.6104 -0.6420 -0.0015 6 6 4.6753 -1.5610 0.0018 7 6 4.3945 -2.9165 -0.0056 8 6 5.4906 -3.9059 -0.0078 9 8 6.6474 -3.5316 -0.0081 10 7 5.2087 -5.2239 -0.0092 11 6 6.2962 -6.2055 -0.0108 12 1 7.1485 -5.8422 0.5631 13 6 6.7150 -6.5690 -1.4572 14 7 7.3086 -7.9143 -1.3515 15 6 8.2153 -8.4574 -2.2223 16 1 8.4904 -7.9218 -3.1189 17 6 8.7806 -9.6961 -1.9526 18 7 8.3456 -10.4109 -0.9367 19 14 10.1590 -10.3484 -3.0314 20 1 11.4690 -10.0124 -2.4180 21 1 10.0344 -11.8229 -3.1560 22 1 10.0694 -9.7285 -4.3779 23 6 6.7667 -8.5759 -0.1556 24 6 5.8081 -7.5770 0.5261 25 1 4.7775 -7.7645 0.2247 26 8 5.9362 -7.6379 1.9480 27 6 3.0428 -3.3441 -0.0050 28 6 2.0477 -2.4388 -0.0031 29 7 2.3165 -1.0982 -0.0005 30 1 -0.3633 -0.0005 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8897 -0.5143 33 1 1.9782 2.1180 0.0004 34 1 5.6979 -1.2137 0.0055 35 1 4.2857 -5.5224 -0.0092 36 1 5.8430 -6.5894 -2.1109 37 1 7.4522 -5.8572 -1.8289 38 1 8.7404 -11.2767 -0.7485 39 1 7.5781 -8.8344 0.5249 40 1 6.2222 -9.4758 -0.4417 41 1 5.6444 -8.4753 2.3336 42 1 2.8114 -4.3990 -0.0066 43 1 1.0215 -2.7757 -0.0031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076996847.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:39 Heat of formation + Delta-G solvation = 40.960918 kcal Electronic energy + Delta-G solvation = -27370.265705 eV Core-core repulsion = 23417.929788 eV Total energy + Delta-G solvation = -3952.335916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.18506 -39.97893 -38.10979 -37.13715 -35.13067 -34.24837 -34.19485 -32.03972 -31.46074 -30.35700 -28.58977 -27.50449 -26.73494 -24.76547 -23.85205 -23.45860 -21.51765 -20.90789 -20.53965 -20.20855 -18.05176 -17.69550 -17.22792 -16.75322 -16.65483 -16.41517 -15.75144 -15.17311 -14.84895 -14.76883 -14.46651 -14.12421 -13.91450 -13.87372 -13.53172 -13.50666 -13.19546 -12.92168 -12.71369 -12.56006 -12.19951 -12.12145 -12.04332 -11.60483 -11.30035 -11.05373 -10.92796 -10.83181 -10.43024 -10.20101 -10.02891 -9.94611 -9.89825 -9.39134 -9.19362 -8.93671 -8.65170 -8.07049 -6.94677 -5.80671 -3.13892 0.21420 0.71477 2.17341 2.35074 2.79426 3.04067 3.38411 3.44228 3.45310 3.48360 3.90168 4.10021 4.20405 4.38070 4.45221 4.55359 4.58674 4.63879 4.89295 5.01998 5.04834 5.14373 5.16103 5.32844 5.38153 5.44734 5.52071 5.61507 5.67502 5.74190 5.77393 6.01681 6.05755 6.07795 6.25333 6.42633 6.58060 6.65815 6.80810 7.25779 7.44478 7.49794 7.54845 7.70820 8.06005 8.13610 8.23909 9.11776 9.72094 10.34954 11.31594 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.026154 B = 0.002323 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.325773 B =12050.061312 C =12462.240612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.064 4.064 3 C 0.034 3.966 4 N -0.476 5.476 5 C 0.208 3.792 6 C 0.000 4.000 7 C -0.120 4.120 8 C 0.562 3.438 9 O -0.526 6.526 10 N -0.706 5.706 11 C 0.138 3.862 12 H 0.107 0.893 13 C 0.130 3.870 14 N -0.600 5.600 15 C -0.230 4.230 16 H 0.081 0.919 17 C -0.006 4.006 18 N -0.922 5.922 19 Si 0.914 3.086 20 H -0.287 1.287 21 H -0.291 1.291 22 H -0.280 1.280 23 C 0.153 3.847 24 C 0.069 3.931 25 H 0.057 0.943 26 O -0.563 6.563 27 C -0.113 4.113 28 C 0.047 3.953 29 N -0.352 5.352 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.183 0.817 34 H 0.167 0.833 35 H 0.396 0.604 36 H 0.024 0.976 37 H 0.053 0.947 38 H 0.254 0.746 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.377 0.623 42 H 0.155 0.845 43 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.207 15.626 4.178 25.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.179 4.179 3 C -0.120 4.120 4 N -0.195 5.195 5 C -0.033 4.033 6 C -0.021 4.021 7 C -0.129 4.129 8 C 0.348 3.652 9 O -0.403 6.403 10 N -0.357 5.357 11 C 0.033 3.967 12 H 0.125 0.875 13 C 0.002 3.998 14 N -0.327 5.327 15 C -0.358 4.358 16 H 0.099 0.901 17 C -0.202 4.202 18 N -0.569 5.569 19 Si 0.744 3.256 20 H -0.214 1.214 21 H -0.217 1.217 22 H -0.205 1.205 23 C 0.027 3.973 24 C 0.009 3.991 25 H 0.075 0.925 26 O -0.368 6.368 27 C -0.134 4.134 28 C -0.074 4.074 29 N -0.025 5.025 30 H 0.092 0.908 31 H 0.104 0.896 32 H 0.084 0.916 33 H 0.200 0.800 34 H 0.184 0.816 35 H 0.231 0.769 36 H 0.041 0.959 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.224 0.776 42 H 0.172 0.828 43 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -18.359 16.780 4.070 25.203 hybrid contribution -0.776 -1.749 -0.468 1.970 sum -19.135 15.031 3.602 24.598 Atomic orbital electron populations 1.20203 0.86299 1.03641 1.02897 1.21357 0.94907 0.85267 1.16350 1.22395 0.87813 0.98759 1.03024 1.70689 1.21834 1.06104 1.20871 1.20714 0.83579 0.90928 1.08081 1.20730 0.98451 0.89431 0.93459 1.19993 0.93554 0.93593 1.05755 1.17816 0.88044 0.82309 0.77013 1.90836 1.20524 1.79769 1.49181 1.45792 1.10163 1.05315 1.74412 1.22328 0.89735 0.86178 0.98427 0.87513 1.21859 0.96705 0.88816 0.92383 1.44239 1.50021 1.10633 1.27838 1.19087 1.14934 1.00955 1.00809 0.90075 1.24835 0.99835 0.97140 0.98419 1.69925 1.43506 1.12865 1.30612 0.86073 0.82195 0.77858 0.79498 1.21442 1.21740 1.20529 1.21829 0.94648 0.91939 0.88885 1.23447 0.98518 0.96091 0.81065 0.92499 1.86473 1.89184 1.41054 1.20046 1.20836 0.90868 1.00205 1.01501 1.21381 1.01305 0.80206 1.04478 1.42724 1.08900 1.05742 1.45108 0.90770 0.89576 0.91610 0.80037 0.81561 0.76922 0.95859 0.92919 0.93612 0.91906 0.93433 0.77616 0.82792 0.81595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.32 10.30 36.01 0.37 0.05 16 2 C -0.06 -0.55 7.02 -81.54 -0.57 -1.12 16 3 C 0.03 0.33 11.75 -17.96 -0.21 0.12 16 4 N -0.48 -6.27 11.31 -12.80 -0.14 -6.41 16 5 C 0.21 2.63 7.79 -155.96 -1.22 1.42 16 6 C 0.00 0.01 9.70 -38.60 -0.37 -0.37 16 7 C -0.12 -1.43 5.90 -104.63 -0.62 -2.04 16 8 C 0.56 8.47 7.77 -12.41 -0.10 8.38 16 9 O -0.53 -10.09 16.05 5.29 0.08 -10.00 16 10 N -0.71 -9.91 5.17 -52.73 -0.27 -10.18 16 11 C 0.14 2.51 3.09 -65.78 -0.20 2.31 16 12 H 0.11 2.26 7.63 -51.93 -0.40 1.86 16 13 C 0.13 2.71 6.93 -2.53 -0.02 2.69 16 14 N -0.60 -15.07 3.39 -170.07 -0.58 -15.65 16 15 C -0.23 -6.36 10.27 -15.06 -0.15 -6.51 16 16 H 0.08 2.18 7.84 -52.49 -0.41 1.77 16 17 C -0.01 -0.17 5.48 -17.44 -0.10 -0.26 16 18 N -0.92 -26.42 10.36 55.49 0.57 -25.84 16 19 Si 0.91 21.96 29.56 -169.99 -5.02 16.94 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C 0.15 3.52 5.16 -3.07 -0.02 3.50 16 24 C 0.07 1.21 3.96 -24.90 -0.10 1.11 16 25 H 0.06 0.85 8.00 -51.93 -0.42 0.43 16 26 O -0.56 -9.28 13.40 -35.23 -0.47 -9.75 16 27 C -0.11 -0.94 9.48 -39.54 -0.37 -1.32 16 28 C 0.05 0.36 10.80 -16.68 -0.18 0.18 16 29 N -0.35 -3.55 2.94 -58.54 -0.17 -3.72 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.24 8.12 -51.93 -0.42 -0.19 16 33 H 0.18 1.16 8.06 -52.49 -0.42 0.73 16 34 H 0.17 2.17 7.67 -52.49 -0.40 1.77 16 35 H 0.40 4.12 6.60 -40.82 -0.27 3.85 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 39 H 0.06 1.65 7.22 -51.93 -0.37 1.27 16 40 H 0.05 1.18 7.61 -51.93 -0.40 0.78 16 41 H 0.38 4.63 9.12 45.56 0.42 5.05 16 42 H 0.15 0.83 6.46 -52.49 -0.34 0.49 16 43 H 0.17 0.64 8.04 -52.48 -0.42 0.22 16 LS Contribution 362.15 15.07 5.46 5.46 Total: -1.00 -36.05 362.15 -9.08 -45.13 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -4.68 Total: 5.89 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: -3.86 Total: 8.13 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: -0.59 Total: -61.80 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.39 Total: -19.75 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.05 -9.08 -45.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076996847.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.095 kcal (2) G-P(sol) polarization free energy of solvation -36.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.134 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds