Wall clock time and date at job start Tue Mar 31 2020 05:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35457 * 126.38622 * 2 1 4 4 N 1.33186 * 108.62059 * 180.02562 * 3 2 1 5 5 C 1.32650 * 109.12481 * 0.02562 * 4 3 2 6 6 C 1.40658 * 132.14975 * 180.22708 * 5 4 3 7 7 C 1.38436 * 119.08787 * 180.24793 * 6 5 4 8 8 C 1.47654 * 120.37039 * 179.75855 * 7 6 5 9 9 O 1.21583 * 119.99911 * 359.72588 * 8 7 6 10 10 N 1.34780 * 120.00043 * 179.71995 * 8 7 6 11 11 C 1.46499 * 120.00063 * 180.02562 * 10 8 7 12 12 H 1.08994 * 110.88757 * 34.30080 * 11 10 8 13 13 C 1.54906 * 111.03405 * 270.39491 * 11 10 8 14 14 N 1.47428 * 104.83099 * 204.89986 * 13 11 10 15 15 C 1.36940 * 125.65193 * 204.17516 * 14 13 11 16 16 H 1.08000 * 119.99447 * 354.82751 * 15 14 13 17 17 C 1.38805 * 119.99928 * 174.83228 * 15 14 13 18 18 N 1.31613 * 120.00339 * 7.05872 * 17 15 14 19 19 Si 1.86802 * 119.99653 * 187.06713 * 17 15 14 20 20 H 1.48501 * 109.47520 * 94.98432 * 19 17 15 21 21 H 1.48501 * 109.46920 * 214.98541 * 19 17 15 22 22 H 1.48501 * 109.47223 * 334.98395 * 19 17 15 23 23 C 1.47022 * 108.69920 * 24.13106 * 14 13 11 24 24 C 1.54319 * 107.27625 * 358.94200 * 23 14 13 25 25 H 1.08999 * 110.72212 * 96.16387 * 24 23 14 26 26 O 1.42896 * 110.87316 * 219.37406 * 24 23 14 27 27 C 1.41779 * 119.25537 * 359.48267 * 7 6 5 28 28 C 1.34535 * 120.14952 * 0.27865 * 27 7 6 29 29 N 1.36433 * 126.39477 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47089 * 269.97473 * 1 2 3 31 31 H 1.09002 * 109.46714 * 29.97669 * 1 2 3 32 32 H 1.09001 * 109.46647 * 149.96957 * 1 2 3 33 33 H 1.07997 * 125.68869 * 0.02562 * 3 2 1 34 34 H 1.07996 * 120.45408 * 359.97438 * 6 5 4 35 35 H 0.97006 * 119.99577 * 0.02562 * 10 8 7 36 36 H 1.08996 * 110.37044 * 323.74246 * 13 11 10 37 37 H 1.09006 * 110.36698 * 86.06589 * 13 11 10 38 38 H 0.97002 * 120.00203 * 179.97438 * 18 17 15 39 39 H 1.09003 * 109.88469 * 239.51953 * 23 14 13 40 40 H 1.09004 * 110.00750 * 118.42851 * 23 14 13 41 41 H 0.96697 * 113.99591 * 293.60538 * 26 24 23 42 42 H 1.07997 * 119.92426 * 180.24967 * 27 7 6 43 43 H 1.08007 * 119.52540 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3106 1.0905 0.0000 4 7 3.5789 0.6841 -0.0006 5 6 3.6104 -0.6420 -0.0015 6 6 4.6753 -1.5610 0.0018 7 6 4.3945 -2.9165 -0.0056 8 6 5.4906 -3.9059 -0.0078 9 8 6.6474 -3.5316 -0.0081 10 7 5.2087 -5.2239 -0.0092 11 6 6.2962 -6.2055 -0.0108 12 1 7.1485 -5.8422 0.5631 13 6 6.7150 -6.5690 -1.4572 14 7 7.3086 -7.9143 -1.3515 15 6 8.2153 -8.4574 -2.2223 16 1 8.4904 -7.9218 -3.1189 17 6 8.7806 -9.6961 -1.9526 18 7 8.3456 -10.4109 -0.9367 19 14 10.1590 -10.3484 -3.0314 20 1 11.4690 -10.0124 -2.4180 21 1 10.0344 -11.8229 -3.1560 22 1 10.0694 -9.7285 -4.3779 23 6 6.7667 -8.5759 -0.1556 24 6 5.8081 -7.5770 0.5261 25 1 4.7775 -7.7645 0.2247 26 8 5.9362 -7.6379 1.9480 27 6 3.0428 -3.3441 -0.0050 28 6 2.0477 -2.4388 -0.0031 29 7 2.3165 -1.0982 -0.0005 30 1 -0.3633 -0.0005 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8897 -0.5143 33 1 1.9782 2.1180 0.0004 34 1 5.6979 -1.2137 0.0055 35 1 4.2857 -5.5224 -0.0092 36 1 5.8430 -6.5894 -2.1109 37 1 7.4522 -5.8572 -1.8289 38 1 8.7404 -11.2767 -0.7485 39 1 7.5781 -8.8344 0.5249 40 1 6.2222 -9.4758 -0.4417 41 1 5.6444 -8.4753 2.3336 42 1 2.8114 -4.3990 -0.0066 43 1 1.0215 -2.7757 -0.0031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001076996847.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:38 Heat of formation + Delta-G solvation = 13.408508 kcal Electronic energy + Delta-G solvation = -27371.460467 eV Core-core repulsion = 23417.929788 eV Total energy + Delta-G solvation = -3953.530678 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.91988 -41.24685 -39.55780 -38.03597 -36.67454 -35.70696 -35.01273 -33.71365 -32.33813 -31.09018 -30.25483 -28.94937 -27.73423 -26.40843 -24.89542 -24.29770 -22.48341 -22.17244 -22.00605 -21.60683 -19.28592 -18.88069 -18.39544 -18.19185 -17.65477 -17.19670 -17.13924 -16.56794 -16.09233 -15.92162 -15.78549 -15.64484 -15.03170 -14.60358 -14.54723 -14.46750 -14.30195 -14.12464 -13.84675 -13.74245 -13.30896 -13.21177 -13.17185 -12.86452 -12.85219 -12.77634 -12.75022 -12.08904 -11.91747 -11.89652 -11.54854 -11.35518 -11.18557 -10.89698 -10.76417 -10.27566 -9.90752 -8.97139 -8.79373 -7.91217 -5.26454 -0.64908 0.01399 1.44669 1.47849 1.51384 1.53549 1.55707 1.84054 1.89994 2.46209 2.53855 3.11715 3.14909 3.29984 3.39507 3.50720 3.53827 3.68501 3.87346 3.92937 4.05597 4.07372 4.17195 4.33978 4.35923 4.45302 4.50679 4.55003 4.74548 4.81705 4.82871 4.91211 4.97750 5.04601 5.13519 5.33254 5.36817 5.39942 5.47179 5.57289 5.66852 5.99768 6.13247 6.41956 6.75561 6.88899 7.04032 7.08793 7.68657 8.30911 9.18971 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.026154 B = 0.002323 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.325773 B =12050.061312 C =12462.240612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.048 4.048 3 C 0.012 3.988 4 N -0.516 5.516 5 C 0.178 3.822 6 C -0.021 4.021 7 C -0.119 4.119 8 C 0.562 3.438 9 O -0.577 6.577 10 N -0.687 5.687 11 C 0.152 3.848 12 H 0.072 0.928 13 C 0.130 3.870 14 N -0.622 5.622 15 C -0.248 4.248 16 H 0.080 0.920 17 C -0.059 4.059 18 N -0.945 5.945 19 Si 0.977 3.023 20 H -0.291 1.291 21 H -0.289 1.289 22 H -0.268 1.268 23 C 0.159 3.841 24 C 0.094 3.906 25 H 0.102 0.898 26 O -0.569 6.569 27 C -0.117 4.117 28 C 0.061 3.939 29 N -0.356 5.356 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.208 0.792 34 H 0.144 0.856 35 H 0.419 0.581 36 H 0.047 0.953 37 H 0.032 0.968 38 H 0.250 0.750 39 H 0.021 0.979 40 H 0.028 0.972 41 H 0.397 0.603 42 H 0.191 0.809 43 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.416 15.789 4.038 29.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.163 4.163 3 C -0.141 4.141 4 N -0.237 5.237 5 C -0.063 4.063 6 C -0.043 4.043 7 C -0.128 4.128 8 C 0.350 3.650 9 O -0.457 6.457 10 N -0.339 5.339 11 C 0.046 3.954 12 H 0.090 0.910 13 C 0.003 3.997 14 N -0.350 5.350 15 C -0.376 4.376 16 H 0.098 0.902 17 C -0.253 4.253 18 N -0.593 5.593 19 Si 0.805 3.195 20 H -0.218 1.218 21 H -0.216 1.216 22 H -0.193 1.193 23 C 0.033 3.967 24 C 0.033 3.967 25 H 0.120 0.880 26 O -0.377 6.377 27 C -0.138 4.138 28 C -0.059 4.059 29 N -0.029 5.029 30 H 0.107 0.893 31 H 0.121 0.879 32 H 0.101 0.899 33 H 0.225 0.775 34 H 0.162 0.838 35 H 0.258 0.742 36 H 0.065 0.935 37 H 0.050 0.950 38 H 0.059 0.941 39 H 0.039 0.961 40 H 0.046 0.954 41 H 0.248 0.752 42 H 0.208 0.792 43 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -22.632 16.945 3.939 28.546 hybrid contribution 0.461 -1.682 -0.405 1.790 sum -22.171 15.263 3.534 27.148 Atomic orbital electron populations 1.20414 0.82753 1.05375 1.04294 1.22111 0.96687 0.84260 1.13227 1.23011 0.87022 1.00695 1.03323 1.70610 1.24122 1.06972 1.21981 1.20574 0.84730 0.90919 1.10042 1.20582 0.97971 0.90362 0.95356 1.19752 0.94331 0.92070 1.06642 1.18316 0.88175 0.82840 0.75658 1.90815 1.22975 1.80563 1.51364 1.45447 1.10312 1.04259 1.73873 1.21785 0.90138 0.87420 0.96086 0.91025 1.21950 0.96649 0.86524 0.94542 1.44502 1.50106 1.12376 1.27991 1.19413 1.15636 1.01189 1.01391 0.90176 1.25631 1.02021 0.97596 1.00044 1.70115 1.44362 1.12865 1.31970 0.85091 0.78965 0.77091 0.78372 1.21774 1.21565 1.19291 1.21653 0.94214 0.93002 0.87826 1.23140 0.99026 0.93260 0.81248 0.88005 1.86442 1.89511 1.42644 1.19097 1.21142 0.88795 1.02251 1.01575 1.22175 1.03312 0.78799 1.01604 1.42990 1.08061 1.07130 1.44729 0.89328 0.87870 0.89901 0.77531 0.83831 0.74176 0.93537 0.94971 0.94088 0.96099 0.95417 0.75242 0.79218 0.76720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.28 10.30 71.24 0.73 0.45 16 2 C -0.05 -0.68 7.02 41.20 0.29 -0.39 16 3 C 0.01 0.22 11.75 83.84 0.99 1.21 16 4 N -0.52 -13.88 11.31 -194.40 -2.20 -16.07 16 5 C 0.18 4.52 7.79 133.97 1.04 5.56 16 6 C -0.02 -0.57 9.70 22.91 0.22 -0.35 16 7 C -0.12 -2.76 5.90 -19.87 -0.12 -2.88 16 8 C 0.56 16.98 7.77 86.73 0.67 17.65 16 9 O -0.58 -23.38 16.05 -3.98 -0.06 -23.44 16 10 N -0.69 -18.09 5.17 -439.00 -2.27 -20.36 16 11 C 0.15 5.48 3.09 46.38 0.14 5.63 16 12 H 0.07 3.14 7.63 -2.39 -0.02 3.12 16 13 C 0.13 5.45 6.93 86.85 0.60 6.06 16 14 N -0.62 -31.88 3.39 -691.99 -2.35 -34.23 16 15 C -0.25 -13.99 10.27 84.03 0.86 -13.13 16 16 H 0.08 4.40 7.84 -2.91 -0.02 4.38 16 17 C -0.06 -3.36 5.48 84.86 0.46 -2.90 16 18 N -0.94 -55.53 10.36 21.65 0.22 -55.30 16 19 Si 0.98 45.86 29.56 68.60 2.03 47.89 16 20 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 21 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 23 C 0.16 7.43 5.16 86.73 0.45 7.88 16 24 C 0.09 3.13 3.96 31.78 0.13 3.25 16 25 H 0.10 2.59 8.00 -2.39 -0.02 2.57 16 26 O -0.57 -17.77 13.40 -148.98 -2.00 -19.77 16 27 C -0.12 -1.53 9.48 22.30 0.21 -1.32 16 28 C 0.06 0.66 10.80 83.08 0.90 1.56 16 29 N -0.36 -6.27 2.94 -339.13 -1.00 -7.27 16 30 H 0.09 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.10 0.11 8.14 -2.39 -0.02 0.10 16 32 H 0.08 0.10 8.12 -2.39 -0.02 0.09 16 33 H 0.21 2.29 8.06 -2.91 -0.02 2.26 16 34 H 0.14 4.30 7.67 -2.91 -0.02 4.27 16 35 H 0.42 7.06 6.60 -92.70 -0.61 6.45 16 36 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.03 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.25 14.23 8.31 -92.71 -0.77 13.46 16 39 H 0.02 1.14 7.22 -2.39 -0.02 1.12 16 40 H 0.03 1.39 7.61 -2.39 -0.02 1.37 16 41 H 0.40 8.89 9.12 -74.06 -0.68 8.21 16 42 H 0.19 0.98 6.46 -2.91 -0.02 0.96 16 43 H 0.22 0.17 8.04 -2.91 -0.02 0.15 16 Total: -1.00 -85.11 362.15 -0.25 -85.36 By element: Atomic # 1 Polarization: 15.12 SS G_CDS: -0.22 Total: 14.90 kcal Atomic # 6 Polarization: 20.71 SS G_CDS: 7.59 Total: 28.29 kcal Atomic # 7 Polarization: -125.64 SS G_CDS: -7.59 Total: -133.23 kcal Atomic # 8 Polarization: -41.15 SS G_CDS: -2.06 Total: -43.21 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -85.11 -0.25 -85.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076996847.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.771 kcal (2) G-P(sol) polarization free energy of solvation -85.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds