Wall clock time and date at job start Tue Mar 31 2020 05:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40175 * 120.19975 * 2 1 4 4 C 1.35255 * 120.12795 * 180.02562 * 3 2 1 5 5 N 1.35950 * 120.64010 * 359.97438 * 4 3 2 6 6 C 1.36584 * 120.66765 * 359.97438 * 5 4 3 7 7 C 1.36289 * 120.19387 * 180.02562 * 2 1 3 8 8 N 1.33198 * 108.60575 * 180.02562 * 6 5 4 9 9 C 1.32331 * 109.81839 * 359.72099 * 8 6 5 10 10 C 1.38292 * 132.39593 * 180.02562 * 5 4 3 11 11 C 1.41815 * 126.79017 * 359.97438 * 10 5 4 12 12 O 1.21781 * 119.99499 * 355.26209 * 11 10 5 13 13 N 1.34769 * 120.00295 * 175.26474 * 11 10 5 14 14 C 1.46504 * 120.00303 * 185.05022 * 13 11 10 15 15 H 1.09002 * 110.88361 * 31.11262 * 14 13 11 16 16 C 1.54911 * 110.99959 * 267.19489 * 14 13 11 17 17 N 1.47426 * 104.82997 * 204.90956 * 16 14 13 18 18 C 1.36932 * 125.64965 * 204.16880 * 17 16 14 19 19 H 1.08003 * 120.00057 * 359.97438 * 18 17 16 20 20 C 1.38814 * 120.00071 * 179.97438 * 18 17 16 21 21 N 1.31618 * 119.99940 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00043 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.46786 * 0.02562 * 22 20 18 24 24 H 1.48492 * 109.46944 * 120.00630 * 22 20 18 25 25 H 1.48504 * 109.47051 * 240.00702 * 22 20 18 26 26 C 1.47024 * 108.70029 * 24.13181 * 17 16 14 27 27 C 1.54318 * 107.27243 * 358.93630 * 26 17 16 28 28 H 1.09007 * 110.72029 * 96.17206 * 27 26 17 29 29 O 1.42897 * 110.87376 * 219.37510 * 27 26 17 30 30 H 1.08997 * 109.47389 * 269.98034 * 1 2 3 31 31 H 1.08993 * 109.47144 * 29.98033 * 1 2 3 32 32 H 1.08999 * 109.47184 * 149.97949 * 1 2 3 33 33 H 1.07999 * 119.93199 * 0.02562 * 3 2 1 34 34 H 1.08003 * 119.67943 * 180.02562 * 4 3 2 35 35 H 1.08005 * 120.31162 * 0.02562 * 7 2 1 36 36 H 1.08002 * 125.89433 * 180.29384 * 9 8 6 37 37 H 0.97000 * 120.00277 * 5.04294 * 13 11 10 38 38 H 1.08996 * 110.36949 * 323.74775 * 16 14 13 39 39 H 1.08997 * 110.36900 * 86.07699 * 16 14 13 40 40 H 0.96999 * 120.00399 * 179.97438 * 21 20 18 41 41 H 1.08995 * 109.87902 * 239.51730 * 26 17 16 42 42 H 1.08998 * 109.88371 * 118.35581 * 26 17 16 43 43 H 0.96702 * 113.99966 * 293.60982 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2121 1.2115 0.0000 4 6 3.5646 1.2098 -0.0005 5 7 4.2560 0.0392 -0.0005 6 6 3.5988 -1.1581 0.0005 7 6 2.1924 -1.1780 -0.0005 8 7 4.5009 -2.1381 0.0008 9 6 5.7207 -1.6250 -0.0060 10 6 5.6096 -0.2442 -0.0005 11 6 6.6737 0.6933 -0.0010 12 8 6.4356 1.8844 -0.0886 13 7 7.9482 0.2661 0.0954 14 6 9.0398 1.2370 0.2064 15 1 8.7088 2.1360 0.7262 16 6 9.6194 1.5824 -1.1881 17 7 11.0009 2.0239 -0.9237 18 6 11.7439 2.8458 -1.7283 19 1 11.3225 3.2275 -2.6466 20 6 13.0388 3.1884 -1.3639 21 7 13.5526 2.7228 -0.2452 22 14 14.0522 4.3101 -2.4613 23 1 13.2509 4.6943 -3.6511 24 1 14.4319 5.5306 -1.7056 25 1 15.2791 3.5974 -2.8995 26 6 11.4484 1.4363 0.3476 27 6 10.2725 0.6099 0.9094 28 1 10.3766 -0.4413 0.6404 29 8 10.1764 0.7599 2.3273 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3633 0.8901 -0.5135 32 1 -0.3633 -0.8898 -0.5141 33 1 1.6742 2.1480 0.0004 34 1 4.1006 2.1475 -0.0001 35 1 1.6607 -2.1181 -0.0014 36 1 6.6436 -2.1860 -0.0120 37 1 8.1429 -0.6841 0.0914 38 1 9.6190 0.7003 -1.8283 39 1 9.0458 2.3867 -1.6487 40 1 14.4576 2.9618 0.0093 41 1 11.7137 2.2277 1.0486 42 1 12.3076 0.7883 0.1744 43 1 10.9228 0.3843 2.8140 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077044989.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:48 Heat of formation + Delta-G solvation = 36.680817 kcal Electronic energy + Delta-G solvation = -27589.398297 eV Core-core repulsion = 23636.876781 eV Total energy + Delta-G solvation = -3952.521515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.14479 -39.64916 -38.12917 -37.72451 -35.10294 -34.62909 -33.98370 -31.95584 -31.03787 -30.29592 -28.66552 -27.65910 -26.62607 -24.53345 -23.97534 -23.41135 -21.70475 -20.92292 -20.49545 -20.19876 -18.40026 -17.24031 -17.00742 -16.94585 -16.44459 -16.39140 -15.65153 -15.37659 -14.94635 -14.66063 -14.54700 -14.20514 -14.06244 -13.87108 -13.83232 -13.19440 -12.95512 -12.70153 -12.50541 -12.48147 -12.13282 -12.08380 -12.03399 -11.56921 -11.27262 -10.93033 -10.88295 -10.83779 -10.60842 -10.14882 -9.94339 -9.91901 -9.85928 -9.36110 -9.19916 -8.91626 -8.66002 -8.07321 -6.92762 -5.77591 -3.12094 0.41778 0.55552 2.08880 2.14491 3.15983 3.35879 3.37735 3.40953 3.44779 3.46923 3.79087 4.21366 4.32306 4.41722 4.46603 4.60661 4.72022 4.81127 4.89768 5.08398 5.11930 5.17303 5.23031 5.35158 5.42501 5.52969 5.56165 5.63365 5.65314 5.80004 5.87529 6.04228 6.10116 6.15622 6.19124 6.47226 6.59850 6.67711 6.85017 7.31285 7.42411 7.45462 7.61440 7.72690 8.10399 8.15695 8.27985 9.13881 9.73855 10.36694 11.34263 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.024343 B = 0.002468 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.937910 B =11343.445644 C =11924.190825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.054 4.054 3 C -0.146 4.146 4 C 0.083 3.917 5 N -0.325 5.325 6 C 0.246 3.754 7 C -0.098 4.098 8 N -0.498 5.498 9 C 0.107 3.893 10 C -0.138 4.138 11 C 0.597 3.403 12 O -0.552 6.552 13 N -0.702 5.702 14 C 0.142 3.858 15 H 0.106 0.894 16 C 0.130 3.870 17 N -0.600 5.600 18 C -0.227 4.227 19 H 0.081 0.919 20 C -0.008 4.008 21 N -0.924 5.924 22 Si 0.915 3.085 23 H -0.279 1.279 24 H -0.290 1.290 25 H -0.290 1.290 26 C 0.154 3.846 27 C 0.068 3.932 28 H 0.059 0.941 29 O -0.563 6.563 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.156 0.844 34 H 0.179 0.821 35 H 0.154 0.846 36 H 0.191 0.809 37 H 0.398 0.602 38 H 0.025 0.975 39 H 0.051 0.949 40 H 0.253 0.747 41 H 0.061 0.939 42 H 0.050 0.950 43 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.005 -9.200 2.961 24.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.061 4.061 3 C -0.167 4.167 4 C -0.042 4.042 5 N 0.006 4.994 6 C 0.006 3.994 7 C -0.118 4.118 8 N -0.217 5.217 9 C -0.054 4.054 10 C -0.252 4.252 11 C 0.386 3.614 12 O -0.432 6.432 13 N -0.352 5.352 14 C 0.037 3.963 15 H 0.124 0.876 16 C 0.003 3.997 17 N -0.328 5.328 18 C -0.355 4.355 19 H 0.099 0.901 20 C -0.204 4.204 21 N -0.571 5.571 22 Si 0.745 3.255 23 H -0.204 1.204 24 H -0.217 1.217 25 H -0.217 1.217 26 C 0.028 3.972 27 C 0.008 3.992 28 H 0.076 0.924 29 O -0.368 6.368 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.173 0.827 34 H 0.197 0.803 35 H 0.172 0.828 36 H 0.208 0.792 37 H 0.233 0.767 38 H 0.043 0.957 39 H 0.069 0.931 40 H 0.063 0.937 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -23.642 -8.727 2.755 25.352 hybrid contribution 1.605 0.654 -0.389 1.776 sum -22.038 -8.073 2.367 23.589 Atomic orbital electron populations 1.20801 0.89357 1.03636 1.03113 1.19885 0.97262 0.92013 0.96893 1.20866 0.91895 0.99553 1.04358 1.22113 0.93031 0.89800 0.99222 1.42410 1.06460 1.07658 1.42882 1.21057 0.94514 0.80285 1.03572 1.20128 0.87973 0.99804 1.03890 1.70503 0.98994 1.28727 1.23433 1.23189 0.96636 0.89377 0.96171 1.19908 0.82706 0.96252 1.26367 1.15367 0.82073 0.86996 0.76992 1.90823 1.84359 1.16810 1.51239 1.45546 1.05192 1.10288 1.74210 1.22284 0.84259 0.92112 0.97622 0.87620 1.21851 0.87148 0.97822 0.92915 1.44256 1.09518 1.56350 1.22674 1.19134 0.94336 1.20722 1.01334 0.90085 1.24822 0.97254 1.00631 0.97735 1.69927 1.15629 1.48356 1.23230 0.85991 0.80011 0.79987 0.79464 1.20423 1.21667 1.21703 1.21822 0.91450 0.95645 0.88276 1.23470 0.96712 0.98195 0.80819 0.92351 1.86466 1.48644 1.83834 1.17850 0.90289 0.90735 0.90769 0.82685 0.80343 0.82839 0.79199 0.76737 0.95729 0.93095 0.93685 0.92070 0.93215 0.77608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.45 10.02 36.01 0.36 -0.09 16 2 C -0.05 -0.40 5.88 -104.60 -0.62 -1.01 16 3 C -0.15 -1.16 9.68 -39.92 -0.39 -1.55 16 4 C 0.08 0.93 10.51 -16.79 -0.18 0.76 16 5 N -0.32 -4.32 2.96 -60.15 -0.18 -4.50 16 6 C 0.25 3.08 7.77 -156.06 -1.21 1.87 16 7 C -0.10 -0.89 9.75 -39.37 -0.38 -1.28 16 8 N -0.50 -6.66 11.25 -12.27 -0.14 -6.79 16 9 C 0.11 1.31 11.32 -17.23 -0.20 1.11 16 10 C -0.14 -1.96 6.83 -83.48 -0.57 -2.53 16 11 C 0.60 9.72 7.59 -14.90 -0.11 9.61 16 12 O -0.55 -10.70 15.05 5.12 0.08 -10.62 16 13 N -0.70 -10.62 5.17 -54.55 -0.28 -10.90 16 14 C 0.14 2.67 3.11 -65.78 -0.20 2.46 16 15 H 0.11 2.28 7.61 -51.93 -0.40 1.88 16 16 C 0.13 2.77 6.93 -2.53 -0.02 2.75 16 17 N -0.60 -15.29 3.39 -170.08 -0.58 -15.86 16 18 C -0.23 -6.34 10.28 -15.06 -0.15 -6.49 16 19 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 20 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 21 N -0.92 -26.70 10.31 55.49 0.57 -26.12 16 22 Si 0.92 22.08 29.55 -169.99 -5.02 17.06 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 C 0.15 3.61 5.15 -3.07 -0.02 3.59 16 27 C 0.07 1.24 3.97 -24.90 -0.10 1.14 16 28 H 0.06 0.92 8.00 -51.93 -0.42 0.50 16 29 O -0.56 -9.63 13.40 -35.23 -0.47 -10.10 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.23 8.09 -51.93 -0.42 -0.19 16 32 H 0.07 0.24 8.08 -51.93 -0.42 -0.18 16 33 H 0.16 0.76 8.06 -52.49 -0.42 0.33 16 34 H 0.18 2.10 6.81 -52.48 -0.36 1.74 16 35 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 36 H 0.19 1.63 7.37 -52.49 -0.39 1.24 16 37 H 0.40 4.71 7.36 -40.82 -0.30 4.40 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 41 H 0.06 1.63 7.30 -51.93 -0.38 1.25 16 42 H 0.05 1.25 7.51 -51.93 -0.39 0.86 16 43 H 0.38 4.86 9.12 45.56 0.42 5.28 16 LS Contribution 360.63 15.07 5.43 5.43 Total: -1.00 -35.72 360.63 -9.18 -44.90 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -4.71 Total: 7.51 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: -3.88 Total: 10.01 kcal Atomic # 7 Polarization: -63.58 SS G_CDS: -0.60 Total: -64.19 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.40 Total: -20.72 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -35.72 -9.18 -44.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077044989.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.578 kcal (2) G-P(sol) polarization free energy of solvation -35.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds