Wall clock time and date at job start Tue Mar 31 2020 05:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.40157 * 120.29625 * 2 1 4 4 C 1.35186 * 120.31977 * 180.02562 * 3 2 1 5 5 N 1.36237 * 120.70698 * 359.97302 * 4 3 2 6 6 N 1.40019 * 132.01535 * 179.97438 * 5 4 3 7 7 C 1.30742 * 109.60472 * 180.02562 * 6 5 4 8 8 C 1.40553 * 108.74243 * 359.97438 * 7 6 5 9 9 C 1.46571 * 126.57407 * 179.97438 * 8 7 6 10 10 O 1.21719 * 119.99515 * 179.97438 * 9 8 7 11 11 N 1.34775 * 120.00258 * 359.97438 * 9 8 7 12 12 C 1.46504 * 119.99910 * 179.97438 * 11 9 8 13 13 H 1.08998 * 110.88216 * 31.12595 * 12 11 9 14 14 C 1.54908 * 111.00385 * 267.20101 * 12 11 9 15 15 N 1.47429 * 104.82734 * 204.91803 * 14 12 11 16 16 C 1.36941 * 125.64566 * 204.17684 * 15 14 12 17 17 H 1.08002 * 119.99900 * 359.96491 * 16 15 14 18 18 C 1.38805 * 119.99845 * 179.97438 * 16 15 14 19 19 N 1.31623 * 120.00458 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99966 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47243 * 89.99955 * 20 18 16 22 22 H 1.48499 * 109.47304 * 209.99899 * 20 18 16 23 23 H 1.48502 * 109.47191 * 329.99911 * 20 18 16 24 24 C 1.47020 * 108.70669 * 24.12554 * 15 14 12 25 25 C 1.54328 * 107.26713 * 358.94397 * 24 15 14 26 26 H 1.08999 * 110.72279 * 96.17051 * 25 24 15 27 27 O 1.42903 * 110.86829 * 219.36713 * 25 24 15 28 28 C 1.36574 * 120.07897 * 359.74390 * 5 4 3 29 29 C 1.36451 * 120.29445 * 180.02562 * 2 1 3 30 30 H 1.08995 * 109.47047 * 269.98048 * 1 2 3 31 31 H 1.09003 * 109.46909 * 29.98175 * 1 2 3 32 32 H 1.09000 * 109.46884 * 149.97957 * 1 2 3 33 33 H 1.07997 * 119.83795 * 0.02562 * 3 2 1 34 34 H 1.08001 * 119.64475 * 179.97438 * 4 3 2 35 35 H 1.08001 * 125.62458 * 179.97438 * 7 6 5 36 36 H 0.96993 * 120.00137 * 0.02562 * 11 9 8 37 37 H 1.08997 * 110.36591 * 323.75411 * 14 12 11 38 38 H 1.08999 * 110.36603 * 86.08010 * 14 12 11 39 39 H 0.97001 * 120.00342 * 180.02562 * 19 18 16 40 40 H 1.08995 * 109.88845 * 239.52592 * 24 15 14 41 41 H 1.09000 * 110.00938 * 118.42878 * 24 15 14 42 42 H 0.96704 * 114.00488 * 293.61638 * 27 25 24 43 43 H 1.08002 * 120.37098 * 359.94991 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2141 1.2102 0.0000 4 6 3.5660 1.2107 -0.0005 5 7 4.2621 0.0396 -0.0005 6 7 5.6353 -0.2344 -0.0014 7 6 5.8244 -1.5280 -0.0015 8 6 4.5728 -2.1675 0.0000 9 6 4.3306 -3.6130 -0.0002 10 8 3.1904 -4.0390 0.0017 11 7 5.3703 -4.4706 -0.0023 12 6 5.1281 -5.9154 -0.0019 13 1 4.2031 -6.1545 -0.5264 14 6 5.1090 -6.4748 1.4426 15 7 5.4730 -7.8964 1.3016 16 6 5.1505 -8.8940 2.1825 17 1 4.5816 -8.6660 3.0718 18 6 5.5549 -10.1981 1.9326 19 7 6.2479 -10.4761 0.8487 20 14 5.1156 -11.5588 3.1347 21 1 3.8097 -12.1541 2.7529 22 1 6.1664 -12.6076 3.1008 23 1 5.0214 -10.9966 4.5059 24 6 6.2385 -8.0660 0.0579 25 6 6.3297 -6.6808 -0.6164 26 1 7.2695 -6.1900 -0.3638 27 8 6.1856 -6.7941 -2.0336 28 6 3.5961 -1.1526 0.0053 29 6 2.1954 -1.1782 -0.0005 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6763 2.1467 0.0004 34 1 4.0998 2.1496 -0.0009 35 1 6.7841 -2.0234 -0.0025 36 1 6.2789 -4.1311 -0.0034 37 1 5.8414 -5.9551 2.0603 38 1 4.1122 -6.3793 1.8732 39 1 6.5302 -11.3875 0.6738 40 1 5.7250 -8.7660 -0.6011 41 1 7.2391 -8.4351 0.2832 42 1 6.9110 -7.2648 -2.4665 43 1 1.6663 -2.1197 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077171717.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:43 Heat of formation + Delta-G solvation = 50.236140 kcal Electronic energy + Delta-G solvation = -27561.869271 eV Core-core repulsion = 23609.935559 eV Total energy + Delta-G solvation = -3951.933712 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.38063 -39.37186 -37.98103 -37.52804 -35.01306 -33.96204 -33.79379 -31.68691 -31.60366 -29.82248 -28.37311 -27.53192 -26.72289 -24.54019 -23.91680 -22.68900 -22.19470 -20.53409 -20.29037 -19.93818 -18.12380 -17.17780 -16.95858 -16.67096 -16.31533 -16.04539 -15.66301 -15.36780 -14.90926 -14.59764 -14.32076 -13.99798 -13.87413 -13.81777 -13.61379 -13.07240 -12.93945 -12.63136 -12.40447 -12.27908 -12.13084 -11.99612 -11.78994 -11.44838 -11.20507 -11.09700 -10.85151 -10.79287 -10.54793 -10.13390 -9.85265 -9.79876 -9.70205 -9.63105 -9.26357 -8.75190 -8.58048 -7.84826 -6.87341 -5.72983 -3.07264 0.35530 0.72015 1.87386 2.04098 2.91349 3.40942 3.43760 3.47028 3.49069 3.68035 3.95433 4.18642 4.25646 4.48081 4.50606 4.68303 4.76339 4.86178 5.04583 5.08856 5.20714 5.24334 5.33953 5.35817 5.48113 5.53799 5.64108 5.68472 5.73895 5.88557 5.99560 6.08063 6.12606 6.20637 6.21133 6.51529 6.61745 6.69224 6.99232 7.19231 7.37059 7.50887 7.75660 7.86695 8.17149 8.21249 8.58817 9.18641 9.78773 10.42184 11.38790 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.019744 B = 0.002591 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.842448 B =10804.734865 C =11511.101686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.047 4.047 3 C -0.157 4.157 4 C 0.111 3.889 5 N -0.270 5.270 6 N -0.322 5.322 7 C 0.119 3.881 8 C -0.306 4.306 9 C 0.598 3.402 10 O -0.550 6.550 11 N -0.712 5.712 12 C 0.142 3.858 13 H 0.106 0.894 14 C 0.130 3.870 15 N -0.600 5.600 16 C -0.227 4.227 17 H 0.081 0.919 18 C -0.009 4.009 19 N -0.924 5.924 20 Si 0.915 3.085 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.154 3.846 25 C 0.068 3.932 26 H 0.057 0.943 27 O -0.563 6.563 28 C 0.166 3.834 29 C -0.107 4.107 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.157 0.843 34 H 0.172 0.828 35 H 0.199 0.801 36 H 0.394 0.606 37 H 0.024 0.976 38 H 0.050 0.950 39 H 0.253 0.747 40 H 0.060 0.940 41 H 0.048 0.952 42 H 0.375 0.625 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.342 24.919 -4.057 25.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.052 4.052 3 C -0.179 4.179 4 C -0.016 4.016 5 N -0.035 5.035 6 N -0.143 5.143 7 C -0.061 4.061 8 C -0.321 4.321 9 C 0.387 3.613 10 O -0.429 6.429 11 N -0.361 5.361 12 C 0.036 3.964 13 H 0.124 0.876 14 C 0.002 3.998 15 N -0.328 5.328 16 C -0.355 4.355 17 H 0.098 0.902 18 C -0.205 4.205 19 N -0.572 5.572 20 Si 0.745 3.255 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.028 3.972 25 C 0.008 3.992 26 H 0.074 0.926 27 O -0.367 6.367 28 C 0.045 3.955 29 C -0.127 4.127 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.175 0.825 34 H 0.189 0.811 35 H 0.215 0.785 36 H 0.228 0.772 37 H 0.042 0.958 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.222 0.778 43 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.934 25.809 -3.917 26.567 hybrid contribution 0.660 -1.636 0.514 1.837 sum -4.274 24.174 -3.403 24.783 Atomic orbital electron populations 1.20848 0.89410 1.03746 1.03270 1.20071 0.97446 0.92110 0.95562 1.20830 0.91837 0.99649 1.05539 1.21523 0.92025 0.88327 0.99687 1.46051 1.06388 1.05313 1.45710 1.77562 0.88089 1.17024 1.31610 1.24080 0.98778 0.90426 0.92813 1.19779 0.91343 0.93630 1.27360 1.16798 0.84892 0.83942 0.75716 1.90770 1.21771 1.78958 1.51384 1.45616 1.08534 1.06466 1.75520 1.22220 0.99332 0.77215 0.97589 0.87625 1.21858 0.98686 0.86380 0.92829 1.44249 1.63193 1.01843 1.23525 1.19094 1.29147 0.86413 1.00825 0.90155 1.24811 1.00344 0.97278 0.98019 1.69926 1.42158 1.18814 1.26316 0.86072 0.77561 0.81698 0.80158 1.21509 1.21676 1.20644 1.21805 0.97264 0.90197 0.87907 1.23467 0.96101 0.98707 0.80953 0.92554 1.86479 1.50657 1.80020 1.19576 1.19289 0.93013 0.85613 0.97546 1.20805 0.90003 1.00358 1.01517 0.90123 0.90820 0.90444 0.82549 0.81115 0.78488 0.77249 0.95845 0.93169 0.93689 0.92149 0.93366 0.77781 0.82019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.64 10.03 36.01 0.36 -0.28 16 2 C -0.05 -0.38 5.89 -104.54 -0.62 -1.00 16 3 C -0.16 -1.00 9.67 -39.95 -0.39 -1.39 16 4 C 0.11 0.88 11.17 -16.68 -0.19 0.69 16 5 N -0.27 -3.19 3.86 -10.55 -0.04 -3.23 16 6 N -0.32 -4.04 12.57 30.75 0.39 -3.65 16 7 C 0.12 1.41 11.44 -17.14 -0.20 1.21 16 8 C -0.31 -4.39 6.17 -104.68 -0.65 -5.04 16 9 C 0.60 10.12 7.78 -12.90 -0.10 10.02 16 10 O -0.55 -11.11 15.34 5.17 0.08 -11.03 16 11 N -0.71 -11.22 5.19 -53.06 -0.28 -11.50 16 12 C 0.14 2.75 3.15 -65.78 -0.21 2.54 16 13 H 0.11 2.36 7.54 -51.93 -0.39 1.97 16 14 C 0.13 2.83 6.93 -2.53 -0.02 2.82 16 15 N -0.60 -15.57 3.39 -170.07 -0.58 -16.14 16 16 C -0.23 -6.40 10.28 -15.06 -0.15 -6.56 16 17 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 18 C -0.01 -0.24 5.49 -17.43 -0.10 -0.34 16 19 N -0.92 -27.02 10.31 55.49 0.57 -26.44 16 20 Si 0.91 22.27 29.55 -169.99 -5.02 17.25 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 C 0.15 3.69 5.15 -3.06 -0.02 3.67 16 25 C 0.07 1.27 3.97 -24.90 -0.10 1.17 16 26 H 0.06 0.92 8.00 -51.93 -0.42 0.50 16 27 O -0.56 -9.95 13.40 -35.23 -0.47 -10.42 16 28 C 0.17 2.23 6.76 -84.07 -0.57 1.66 16 29 C -0.11 -1.26 9.38 -39.53 -0.37 -1.63 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.27 8.10 -51.93 -0.42 -0.15 16 32 H 0.08 0.45 8.09 -51.93 -0.42 0.03 16 33 H 0.16 0.43 8.06 -52.49 -0.42 0.01 16 34 H 0.17 0.81 8.06 -52.49 -0.42 0.39 16 35 H 0.20 1.59 7.46 -52.49 -0.39 1.19 16 36 H 0.39 4.89 7.49 -40.82 -0.31 4.58 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 39 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 40 H 0.06 1.63 7.30 -51.93 -0.38 1.26 16 41 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 42 H 0.38 5.03 9.12 45.56 0.42 5.45 16 43 H 0.16 2.06 7.12 -52.49 -0.37 1.69 16 LS Contribution 362.59 15.07 5.46 5.46 Total: -1.00 -36.65 362.59 -7.92 -44.57 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -4.73 Total: 7.56 kcal Atomic # 6 Polarization: 10.88 SS G_CDS: -3.30 Total: 7.58 kcal Atomic # 7 Polarization: -61.04 SS G_CDS: 0.07 Total: -60.97 kcal Atomic # 8 Polarization: -21.06 SS G_CDS: -0.39 Total: -21.45 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.65 -7.92 -44.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077171717.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.804 kcal (2) G-P(sol) polarization free energy of solvation -36.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds