Wall clock time and date at job start Tue Mar 31 2020 06:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36117 * 126.31039 * 2 1 4 4 N 1.30096 * 110.04072 * 179.97438 * 3 2 1 5 5 C 1.35856 * 109.53540 * 359.97438 * 4 3 2 6 6 C 1.39711 * 133.50580 * 179.97438 * 5 4 3 7 7 C 1.37839 * 120.11030 * 180.02562 * 6 5 4 8 8 C 1.38340 * 120.72185 * 359.71745 * 7 6 5 9 9 C 1.39394 * 120.27944 * 0.56540 * 8 7 6 10 10 C 1.47536 * 120.24606 * 179.71598 * 9 8 7 11 11 O 1.21590 * 119.99968 * 172.61591 * 10 9 8 12 12 N 1.34777 * 119.99597 * 352.62112 * 10 9 8 13 13 C 1.46502 * 119.99328 * 179.72494 * 12 10 9 14 14 H 1.08993 * 110.64164 * 36.96376 * 13 12 10 15 15 C 1.54328 * 110.71863 * 273.81548 * 13 12 10 16 16 N 1.47019 * 107.26987 * 219.44467 * 15 13 12 17 17 C 1.36937 * 125.64391 * 178.97988 * 16 15 13 18 18 H 1.07999 * 120.00369 * 0.02562 * 17 16 15 19 19 C 1.38820 * 119.99693 * 180.02562 * 17 16 15 20 20 N 1.31609 * 120.00113 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99662 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47486 * 89.99633 * 21 19 17 23 23 H 1.48510 * 109.46698 * 209.99598 * 21 19 17 24 24 H 1.48507 * 109.47176 * 329.99167 * 21 19 17 25 25 C 1.47418 * 108.70793 * 358.94493 * 16 15 13 26 26 C 1.54911 * 104.83059 * 24.12501 * 25 16 15 27 27 H 1.09001 * 111.00633 * 81.06411 * 26 25 16 28 28 O 1.42900 * 111.00903 * 204.91484 * 26 25 16 29 29 C 1.37522 * 126.30929 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.46814 * 252.76050 * 1 2 3 31 31 H 1.08998 * 109.47061 * 12.76126 * 1 2 3 32 32 H 1.09000 * 109.47156 * 132.76414 * 1 2 3 33 33 H 1.07991 * 124.98108 * 0.02562 * 3 2 1 34 34 H 1.08002 * 119.94962 * 359.97438 * 6 5 4 35 35 H 1.07999 * 119.63892 * 180.02562 * 7 6 5 36 36 H 1.07993 * 119.85596 * 180.28308 * 8 7 6 37 37 H 0.96996 * 120.00076 * 359.97438 * 12 10 9 38 38 H 1.08992 * 109.88330 * 338.86914 * 15 13 12 39 39 H 1.08999 * 109.87782 * 99.87919 * 15 13 12 40 40 H 0.97000 * 120.00243 * 180.02562 * 20 19 17 41 41 H 1.08998 * 110.36831 * 142.96007 * 25 16 15 42 42 H 1.08997 * 110.37153 * 265.29136 * 25 16 15 43 43 H 0.96701 * 114.00206 * 292.20019 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2710 1.0969 0.0000 4 7 3.5199 0.7324 0.0005 5 6 3.5973 -0.6240 0.0015 6 6 4.6638 -1.5265 0.0019 7 6 4.4214 -2.8834 0.0024 8 6 3.1264 -3.3700 0.0084 9 6 2.0450 -2.4903 0.0021 10 6 0.6642 -3.0101 0.0021 11 8 -0.2729 -2.2463 0.1320 12 7 0.4417 -4.3316 -0.1417 13 6 -0.9291 -4.8483 -0.1356 14 1 -1.6030 -4.1559 -0.6401 15 6 -1.4042 -5.1189 1.3076 16 7 -2.1831 -6.3656 1.2841 17 6 -2.7648 -6.9637 2.3700 18 1 -2.6697 -6.5163 3.3484 19 6 -3.4767 -8.1451 2.2132 20 7 -3.5930 -8.6900 1.0209 21 14 -4.2708 -8.9605 3.6945 22 1 -5.6518 -8.4416 3.8641 23 1 -4.3164 -10.4301 3.4852 24 1 -3.4753 -8.6583 4.9116 25 6 -2.2349 -6.8648 -0.1020 26 6 -0.9889 -6.2537 -0.7903 27 1 -0.0931 -6.8304 -0.5600 28 8 -1.1816 -6.1531 -2.2027 29 6 2.2793 -1.1082 0.0005 30 1 -0.3633 -0.3046 0.9816 31 1 -0.3633 1.0023 -0.2270 32 1 -0.3633 -0.6978 -0.7545 33 1 1.9247 2.1197 0.0004 34 1 5.6799 -1.1605 0.0010 35 1 5.2515 -3.5743 0.0032 36 1 2.9525 -4.4358 0.0133 37 1 1.1893 -4.9408 -0.2456 38 1 -0.5432 -5.2319 1.9662 39 1 -2.0291 -4.2952 1.6526 40 1 -4.0907 -9.5153 0.9113 41 1 -2.1801 -7.9533 -0.1155 42 1 -3.1456 -6.5238 -0.5943 43 1 -1.2253 -7.0064 -2.6555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077257829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:49 Heat of formation + Delta-G solvation = 44.380132 kcal Electronic energy + Delta-G solvation = -28198.316879 eV Core-core repulsion = 24246.129231 eV Total energy + Delta-G solvation = -3952.187648 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.37269 -39.80963 -37.96407 -37.28770 -35.16069 -34.33429 -33.97111 -31.95799 -30.82209 -29.62612 -28.38711 -27.17275 -26.84410 -24.79672 -23.89919 -22.30946 -22.03117 -20.78855 -20.18255 -19.79876 -17.80330 -17.57928 -17.01556 -16.87446 -16.66774 -16.08515 -15.63299 -15.40832 -14.97366 -14.74390 -14.44223 -14.08054 -13.95446 -13.69740 -13.39648 -13.24254 -12.97536 -12.54369 -12.43626 -12.22348 -12.02433 -11.83437 -11.61620 -11.50721 -11.28051 -11.03614 -10.87875 -10.53136 -10.46324 -10.22690 -9.98779 -9.80067 -9.63032 -9.31576 -8.84631 -8.77300 -8.58016 -8.23853 -6.98134 -5.77638 -3.20233 0.42200 1.30272 2.32290 2.57423 3.08135 3.18696 3.34432 3.39753 3.41300 3.75970 4.05169 4.33332 4.38523 4.53730 4.64098 4.71207 4.78616 5.07816 5.14915 5.17823 5.28351 5.36183 5.45217 5.50457 5.54559 5.58472 5.73507 5.79340 5.94302 5.99792 6.11155 6.15704 6.17219 6.31024 6.41371 6.56858 6.59612 6.84017 6.97681 7.24786 7.46360 7.57372 7.65806 7.66762 8.02666 8.19121 8.28147 9.08412 9.68836 10.30729 11.26641 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.019533 B = 0.002827 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.107281 B = 9901.308715 C =10110.854150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.478 5.478 3 C 0.256 3.744 4 N -0.499 5.499 5 C 0.033 3.967 6 C -0.039 4.039 7 C -0.139 4.139 8 C -0.065 4.065 9 C -0.122 4.122 10 C 0.557 3.443 11 O -0.544 6.544 12 N -0.705 5.705 13 C 0.143 3.857 14 H 0.100 0.900 15 C 0.131 3.869 16 N -0.600 5.600 17 C -0.224 4.224 18 H 0.080 0.920 19 C -0.010 4.010 20 N -0.924 5.924 21 Si 0.918 3.082 22 H -0.288 1.288 23 H -0.289 1.289 24 H -0.280 1.280 25 C 0.130 3.870 26 C 0.067 3.933 27 H 0.062 0.938 28 O -0.566 6.566 29 C 0.097 3.903 30 H 0.083 0.917 31 H 0.068 0.932 32 H 0.109 0.891 33 H 0.214 0.786 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.397 0.603 38 H 0.030 0.970 39 H 0.034 0.966 40 H 0.254 0.746 41 H 0.113 0.887 42 H 0.026 0.974 43 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.962 12.423 -5.347 19.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.165 5.165 3 C -0.030 4.030 4 N -0.218 5.218 5 C -0.086 4.086 6 C -0.058 4.058 7 C -0.159 4.159 8 C -0.085 4.085 9 C -0.129 4.129 10 C 0.345 3.655 11 O -0.424 6.424 12 N -0.354 5.354 13 C 0.039 3.961 14 H 0.118 0.882 15 C 0.004 3.996 16 N -0.327 5.327 17 C -0.352 4.352 18 H 0.098 0.902 19 C -0.205 4.205 20 N -0.573 5.573 21 Si 0.748 3.252 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.206 1.206 25 C 0.004 3.996 26 C 0.007 3.993 27 H 0.080 0.920 28 O -0.371 6.371 29 C -0.016 4.016 30 H 0.102 0.898 31 H 0.086 0.914 32 H 0.127 0.873 33 H 0.231 0.769 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.152 0.848 37 H 0.233 0.767 38 H 0.048 0.952 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.131 0.869 42 H 0.044 0.956 43 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 13.683 13.946 -5.063 20.183 hybrid contribution -0.915 -1.726 0.635 2.054 sum 12.768 12.220 -4.429 18.220 Atomic orbital electron populations 1.22521 0.74021 1.02239 1.06407 1.45363 1.08598 1.04878 1.57700 1.25415 0.85194 0.93587 0.98813 1.70506 1.18414 1.10429 1.22477 1.19048 0.91797 0.90513 1.07208 1.20434 0.97514 0.91424 0.96475 1.20816 0.96709 0.94776 1.03625 1.21157 0.91671 0.98978 0.96727 1.18880 0.93732 0.89936 1.10305 1.18248 0.88599 0.82382 0.76232 1.90781 1.45371 1.55363 1.50901 1.45965 1.09384 1.07285 1.72774 1.22042 0.82118 0.94900 0.97080 0.88160 1.21609 0.94975 0.90354 0.92656 1.44282 1.61234 1.22733 1.04497 1.19106 1.25747 1.03512 0.86826 0.90201 1.24799 1.00519 0.98033 0.97168 1.69723 1.46037 1.21204 1.20289 0.86023 0.79284 0.78529 0.81360 1.21502 1.21566 1.20599 1.22550 0.91525 1.02067 0.83458 1.23639 1.00205 0.94895 0.80588 0.91999 1.86408 1.96307 1.34752 1.19619 1.18606 0.91200 0.88314 1.03527 0.89820 0.91360 0.87312 0.76924 0.84935 0.84586 0.84814 0.76715 0.95216 0.94852 0.93552 0.86903 0.95634 0.77478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.00 9.12 59.85 0.55 1.54 16 2 N -0.48 -5.92 3.19 -122.94 -0.39 -6.32 16 3 C 0.26 2.73 12.47 -89.72 -1.12 1.61 16 4 N -0.50 -6.55 11.28 -12.05 -0.14 -6.69 16 5 C 0.03 0.44 7.22 -84.72 -0.61 -0.17 16 6 C -0.04 -0.41 10.09 -39.18 -0.40 -0.81 16 7 C -0.14 -1.27 9.99 -39.69 -0.40 -1.67 16 8 C -0.07 -0.68 9.51 -39.11 -0.37 -1.05 16 9 C -0.12 -1.64 5.88 -104.94 -0.62 -2.26 16 10 C 0.56 8.48 7.74 -12.47 -0.10 8.38 16 11 O -0.54 -9.24 10.52 5.29 0.06 -9.18 16 12 N -0.70 -10.35 5.08 -53.07 -0.27 -10.62 16 13 C 0.14 2.58 2.97 -66.09 -0.20 2.39 16 14 H 0.10 1.99 7.70 -51.93 -0.40 1.59 16 15 C 0.13 2.76 6.99 -3.06 -0.02 2.74 16 16 N -0.60 -14.94 3.39 -170.08 -0.58 -15.52 16 17 C -0.22 -6.09 10.27 -15.06 -0.15 -6.25 16 18 H 0.08 2.12 7.83 -52.49 -0.41 1.71 16 19 C -0.01 -0.27 5.49 -17.43 -0.10 -0.36 16 20 N -0.92 -25.86 10.09 55.49 0.56 -25.30 16 21 Si 0.92 21.53 29.55 -169.99 -5.02 16.51 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.81 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C 0.13 2.99 5.62 -2.53 -0.01 2.98 16 26 C 0.07 1.20 4.04 -24.58 -0.10 1.10 16 27 H 0.06 1.02 8.00 -51.93 -0.42 0.61 16 28 O -0.57 -9.28 13.47 -35.23 -0.47 -9.75 16 29 C 0.10 1.35 6.78 -83.76 -0.57 0.78 16 30 H 0.08 1.05 7.30 -51.92 -0.38 0.67 16 31 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 32 H 0.11 1.45 5.88 -52.06 -0.31 1.15 16 33 H 0.21 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 35 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 36 H 0.13 1.08 6.46 -52.49 -0.34 0.74 16 37 H 0.40 4.78 6.60 -40.82 -0.27 4.51 16 38 H 0.03 0.62 8.03 -51.93 -0.42 0.20 16 39 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.11 2.86 5.87 -51.93 -0.30 2.55 16 42 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.38 4.67 9.12 45.56 0.42 5.08 16 LS Contribution 351.74 15.07 5.30 5.30 Total: -1.00 -33.81 351.74 -9.67 -43.47 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -4.50 Total: 9.13 kcal Atomic # 6 Polarization: 13.16 SS G_CDS: -4.21 Total: 8.95 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: -0.82 Total: -64.43 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.42 Total: -18.93 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -33.81 -9.67 -43.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077257829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.855 kcal (2) G-P(sol) polarization free energy of solvation -33.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds