Wall clock time and date at job start Tue Mar 31 2020 06:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36117 * 126.31039 * 2 1 4 4 N 1.30096 * 110.04072 * 179.97438 * 3 2 1 5 5 C 1.35856 * 109.53540 * 359.97438 * 4 3 2 6 6 C 1.39711 * 133.50580 * 179.97438 * 5 4 3 7 7 C 1.37839 * 120.11030 * 180.02562 * 6 5 4 8 8 C 1.38340 * 120.72185 * 359.71745 * 7 6 5 9 9 C 1.39394 * 120.27944 * 0.56540 * 8 7 6 10 10 C 1.47536 * 120.24606 * 179.71598 * 9 8 7 11 11 O 1.21590 * 119.99968 * 172.61591 * 10 9 8 12 12 N 1.34777 * 119.99597 * 352.62112 * 10 9 8 13 13 C 1.46502 * 119.99328 * 179.72494 * 12 10 9 14 14 H 1.08993 * 110.64164 * 36.96376 * 13 12 10 15 15 C 1.54328 * 110.71863 * 273.81548 * 13 12 10 16 16 N 1.47019 * 107.26987 * 219.44467 * 15 13 12 17 17 C 1.36937 * 125.64391 * 178.97988 * 16 15 13 18 18 H 1.07999 * 120.00369 * 0.02562 * 17 16 15 19 19 C 1.38820 * 119.99693 * 180.02562 * 17 16 15 20 20 N 1.31609 * 120.00113 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 119.99662 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47486 * 89.99633 * 21 19 17 23 23 H 1.48510 * 109.46698 * 209.99598 * 21 19 17 24 24 H 1.48507 * 109.47176 * 329.99167 * 21 19 17 25 25 C 1.47418 * 108.70793 * 358.94493 * 16 15 13 26 26 C 1.54911 * 104.83059 * 24.12501 * 25 16 15 27 27 H 1.09001 * 111.00633 * 81.06411 * 26 25 16 28 28 O 1.42900 * 111.00903 * 204.91484 * 26 25 16 29 29 C 1.37522 * 126.30929 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.46814 * 252.76050 * 1 2 3 31 31 H 1.08998 * 109.47061 * 12.76126 * 1 2 3 32 32 H 1.09000 * 109.47156 * 132.76414 * 1 2 3 33 33 H 1.07991 * 124.98108 * 0.02562 * 3 2 1 34 34 H 1.08002 * 119.94962 * 359.97438 * 6 5 4 35 35 H 1.07999 * 119.63892 * 180.02562 * 7 6 5 36 36 H 1.07993 * 119.85596 * 180.28308 * 8 7 6 37 37 H 0.96996 * 120.00076 * 359.97438 * 12 10 9 38 38 H 1.08992 * 109.88330 * 338.86914 * 15 13 12 39 39 H 1.08999 * 109.87782 * 99.87919 * 15 13 12 40 40 H 0.97000 * 120.00243 * 180.02562 * 20 19 17 41 41 H 1.08998 * 110.36831 * 142.96007 * 25 16 15 42 42 H 1.08997 * 110.37153 * 265.29136 * 25 16 15 43 43 H 0.96701 * 114.00206 * 292.20019 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2710 1.0969 0.0000 4 7 3.5199 0.7324 0.0005 5 6 3.5973 -0.6240 0.0015 6 6 4.6638 -1.5265 0.0019 7 6 4.4214 -2.8834 0.0024 8 6 3.1264 -3.3700 0.0084 9 6 2.0450 -2.4903 0.0021 10 6 0.6642 -3.0101 0.0021 11 8 -0.2729 -2.2463 0.1320 12 7 0.4417 -4.3316 -0.1417 13 6 -0.9291 -4.8483 -0.1356 14 1 -1.6030 -4.1559 -0.6401 15 6 -1.4042 -5.1189 1.3076 16 7 -2.1831 -6.3656 1.2841 17 6 -2.7648 -6.9637 2.3700 18 1 -2.6697 -6.5163 3.3484 19 6 -3.4767 -8.1451 2.2132 20 7 -3.5930 -8.6900 1.0209 21 14 -4.2708 -8.9605 3.6945 22 1 -5.6518 -8.4416 3.8641 23 1 -4.3164 -10.4301 3.4852 24 1 -3.4753 -8.6583 4.9116 25 6 -2.2349 -6.8648 -0.1020 26 6 -0.9889 -6.2537 -0.7903 27 1 -0.0931 -6.8304 -0.5600 28 8 -1.1816 -6.1531 -2.2027 29 6 2.2793 -1.1082 0.0005 30 1 -0.3633 -0.3046 0.9816 31 1 -0.3633 1.0023 -0.2270 32 1 -0.3633 -0.6978 -0.7545 33 1 1.9247 2.1197 0.0004 34 1 5.6799 -1.1605 0.0010 35 1 5.2515 -3.5743 0.0032 36 1 2.9525 -4.4358 0.0133 37 1 1.1893 -4.9408 -0.2456 38 1 -0.5432 -5.2319 1.9662 39 1 -2.0291 -4.2952 1.6526 40 1 -4.0907 -9.5153 0.9113 41 1 -2.1801 -7.9533 -0.1155 42 1 -3.1456 -6.5238 -0.5943 43 1 -1.2253 -7.0064 -2.6555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077257829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:48 Heat of formation + Delta-G solvation = 19.906782 kcal Electronic energy + Delta-G solvation = -28199.378123 eV Core-core repulsion = 24246.129231 eV Total energy + Delta-G solvation = -3953.248892 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.23788 -41.07093 -39.42867 -38.17270 -36.70294 -35.71890 -34.94121 -33.72908 -31.87538 -30.56597 -30.00543 -28.72181 -27.84218 -26.49951 -24.99917 -23.15152 -23.12368 -22.42997 -21.71348 -20.90680 -19.17615 -18.74292 -18.50718 -18.06438 -17.64848 -17.24516 -16.99916 -16.51583 -16.26787 -15.93890 -15.76064 -15.50082 -15.17135 -14.88617 -14.70997 -14.48063 -14.17665 -14.01152 -13.79251 -13.46110 -13.22844 -13.07798 -12.98585 -12.86770 -12.73480 -12.63691 -12.39124 -12.06665 -11.94262 -11.46443 -11.44634 -11.40563 -11.04622 -10.78946 -10.59586 -10.15775 -9.42867 -9.12659 -8.98673 -7.83376 -5.29575 -0.45163 0.45271 1.40411 1.47122 1.48542 1.57246 1.74626 1.96577 2.08354 2.45959 2.85785 3.05761 3.25809 3.28576 3.52835 3.60370 3.73155 3.87067 3.95274 3.98594 4.03994 4.17371 4.32293 4.35442 4.40513 4.47003 4.55454 4.58343 4.71703 4.80091 4.84594 4.98550 5.12932 5.27720 5.36526 5.37297 5.42941 5.43883 5.48794 5.66907 5.78973 6.16026 6.20033 6.44972 6.79975 6.85347 7.03669 7.13249 7.67651 8.29502 9.18229 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.019533 B = 0.002827 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.107281 B = 9901.308715 C =10110.854150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.488 5.488 3 C 0.262 3.738 4 N -0.526 5.526 5 C 0.009 3.991 6 C -0.041 4.041 7 C -0.129 4.129 8 C -0.056 4.056 9 C -0.148 4.148 10 C 0.553 3.447 11 O -0.567 6.567 12 N -0.695 5.695 13 C 0.160 3.840 14 H 0.079 0.921 15 C 0.133 3.867 16 N -0.618 5.618 17 C -0.245 4.245 18 H 0.080 0.920 19 C -0.059 4.059 20 N -0.945 5.945 21 Si 0.982 3.018 22 H -0.289 1.289 23 H -0.288 1.288 24 H -0.270 1.270 25 C 0.134 3.866 26 C 0.092 3.908 27 H 0.089 0.911 28 O -0.568 6.568 29 C 0.067 3.933 30 H 0.063 0.937 31 H 0.107 0.893 32 H 0.084 0.916 33 H 0.257 0.743 34 H 0.153 0.847 35 H 0.175 0.825 36 H 0.159 0.841 37 H 0.413 0.587 38 H 0.038 0.962 39 H 0.015 0.985 40 H 0.251 0.749 41 H 0.091 0.909 42 H -0.009 1.009 43 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.204 12.521 -5.348 21.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.175 5.175 3 C -0.023 4.023 4 N -0.246 5.246 5 C -0.109 4.109 6 C -0.061 4.061 7 C -0.149 4.149 8 C -0.076 4.076 9 C -0.154 4.154 10 C 0.343 3.657 11 O -0.449 6.449 12 N -0.346 5.346 13 C 0.054 3.946 14 H 0.098 0.902 15 C 0.007 3.993 16 N -0.346 5.346 17 C -0.374 4.374 18 H 0.097 0.903 19 C -0.252 4.252 20 N -0.594 5.594 21 Si 0.810 3.190 22 H -0.217 1.217 23 H -0.214 1.214 24 H -0.194 1.194 25 C 0.008 3.992 26 C 0.031 3.969 27 H 0.106 0.894 28 O -0.376 6.376 29 C -0.046 4.046 30 H 0.082 0.918 31 H 0.125 0.875 32 H 0.102 0.898 33 H 0.272 0.728 34 H 0.171 0.829 35 H 0.193 0.807 36 H 0.177 0.823 37 H 0.251 0.749 38 H 0.056 0.944 39 H 0.033 0.967 40 H 0.061 0.939 41 H 0.109 0.891 42 H 0.009 0.991 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 15.970 14.041 -5.084 21.864 hybrid contribution -1.585 -1.695 0.610 2.399 sum 14.386 12.346 -4.474 19.478 Atomic orbital electron populations 1.22342 0.73830 1.03756 1.04363 1.45537 1.08832 1.05150 1.58030 1.26276 0.84488 0.94761 0.96784 1.70500 1.19656 1.10540 1.23898 1.19499 0.92331 0.91019 1.08018 1.20857 0.97942 0.91869 0.95420 1.21244 0.97220 0.94777 1.01624 1.21549 0.91477 0.99861 0.94697 1.18855 0.93104 0.90358 1.13059 1.18668 0.89449 0.82110 0.75473 1.90797 1.46436 1.55931 1.51769 1.45704 1.08275 1.07571 1.73028 1.21536 0.83633 0.94652 0.94735 0.90245 1.21649 0.94395 0.88332 0.94951 1.44526 1.61438 1.23956 1.04673 1.19428 1.26298 1.03976 0.87673 0.90252 1.25604 1.01179 0.98609 0.99811 1.69943 1.46377 1.21242 1.21857 0.85034 0.78080 0.77243 0.78662 1.21657 1.21444 1.19444 1.22371 0.92764 1.00920 0.83184 1.23245 0.98378 0.94229 0.81008 0.89355 1.86384 1.96156 1.36552 1.18464 1.18977 0.92037 0.88979 1.04579 0.91843 0.87509 0.89795 0.72767 0.82922 0.80718 0.82314 0.74881 0.94437 0.96682 0.93942 0.89096 0.99055 0.75187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 2.21 9.12 127.77 1.16 3.38 16 2 N -0.49 -11.91 3.19 -542.86 -1.73 -13.64 16 3 C 0.26 5.25 12.47 180.03 2.25 7.49 16 4 N -0.53 -13.27 11.28 -192.04 -2.17 -15.43 16 5 C 0.01 0.24 7.22 39.41 0.28 0.52 16 6 C -0.04 -0.79 10.09 22.53 0.23 -0.56 16 7 C -0.13 -1.92 9.99 22.20 0.22 -1.70 16 8 C -0.06 -1.02 9.51 22.57 0.21 -0.81 16 9 C -0.15 -3.82 5.88 -20.07 -0.12 -3.94 16 10 C 0.55 16.77 7.74 86.70 0.67 17.44 16 11 O -0.57 -19.92 10.52 -4.00 -0.04 -19.96 16 12 N -0.69 -19.67 5.08 -440.07 -2.24 -21.91 16 13 C 0.16 5.78 2.97 46.18 0.14 5.92 16 14 H 0.08 3.23 7.70 -2.39 -0.02 3.21 16 15 C 0.13 5.72 6.99 86.73 0.61 6.32 16 16 N -0.62 -31.45 3.39 -692.01 -2.35 -33.80 16 17 C -0.25 -13.57 10.27 84.04 0.86 -12.70 16 18 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 19 C -0.06 -3.25 5.49 84.87 0.47 -2.78 16 20 N -0.95 -53.87 10.09 21.65 0.22 -53.65 16 21 Si 0.98 44.48 29.55 68.60 2.03 46.51 16 22 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 23 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 24 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 25 C 0.13 6.30 5.62 86.86 0.49 6.78 16 26 C 0.09 3.22 4.04 31.99 0.13 3.35 16 27 H 0.09 2.69 8.00 -2.39 -0.02 2.67 16 28 O -0.57 -17.82 13.47 -148.98 -2.01 -19.83 16 29 C 0.07 1.85 6.78 39.25 0.27 2.11 16 30 H 0.06 1.67 7.30 -2.38 -0.02 1.65 16 31 H 0.11 1.49 8.10 -2.39 -0.02 1.47 16 32 H 0.08 2.34 5.88 -4.53 -0.03 2.31 16 33 H 0.26 2.31 8.06 -2.92 -0.02 2.29 16 34 H 0.15 2.18 8.06 -2.91 -0.02 2.15 16 35 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 36 H 0.16 1.98 6.46 -2.91 -0.02 1.96 16 37 H 0.41 8.92 6.60 -92.71 -0.61 8.31 16 38 H 0.04 1.55 8.03 -2.39 -0.02 1.53 16 39 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 40 H 0.25 13.84 8.31 -92.71 -0.77 13.07 16 41 H 0.09 4.71 5.87 -2.39 -0.01 4.70 16 42 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 43 H 0.40 9.09 9.12 -74.06 -0.68 8.41 16 Total: -1.00 -76.38 351.74 -0.64 -77.02 By element: Atomic # 1 Polarization: 24.09 SS G_CDS: -0.22 Total: 23.86 kcal Atomic # 6 Polarization: 22.96 SS G_CDS: 7.87 Total: 30.83 kcal Atomic # 7 Polarization: -130.16 SS G_CDS: -8.27 Total: -138.43 kcal Atomic # 8 Polarization: -37.74 SS G_CDS: -2.05 Total: -39.79 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -76.38 -0.64 -77.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077257829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.926 kcal (2) G-P(sol) polarization free energy of solvation -76.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.019 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds