Wall clock time and date at job start Tue Mar 31 2020 06:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36090 * 126.30462 * 2 1 4 4 N 1.30067 * 110.13094 * 179.97438 * 3 2 1 5 5 C 1.35864 * 109.55910 * 359.97438 * 4 3 2 6 6 C 1.39407 * 133.52450 * 180.02562 * 5 4 3 7 7 C 1.39116 * 119.51462 * 179.97438 * 6 5 4 8 8 C 1.47680 * 119.90664 * 179.97438 * 7 6 5 9 9 O 1.21577 * 120.00077 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00435 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00200 * 180.02562 * 10 8 7 12 12 H 1.09002 * 110.88857 * 34.29247 * 11 10 8 13 13 C 1.54915 * 111.03417 * 270.38731 * 11 10 8 14 14 N 1.47418 * 104.83107 * 204.89999 * 13 11 10 15 15 C 1.36939 * 125.65017 * 204.17029 * 14 13 11 16 16 H 1.07998 * 119.99534 * 359.97438 * 15 14 13 17 17 C 1.38807 * 120.00342 * 179.97438 * 15 14 13 18 18 N 1.31620 * 119.99981 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00118 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47103 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46701 * 120.00103 * 19 17 15 22 22 H 1.48494 * 109.47419 * 240.00108 * 19 17 15 23 23 C 1.47029 * 108.70495 * 24.13113 * 14 13 11 24 24 C 1.54327 * 107.26790 * 358.93814 * 23 14 13 25 25 H 1.09001 * 110.71543 * 96.16961 * 24 23 14 26 26 O 1.42897 * 110.86707 * 219.37089 * 24 23 14 27 27 C 1.40134 * 120.19246 * 0.25435 * 7 6 5 28 28 C 1.36433 * 120.45640 * 359.48014 * 27 7 6 29 29 C 1.37803 * 126.30482 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.46881 * 89.97645 * 1 2 3 31 31 H 1.08992 * 109.47033 * 209.97671 * 1 2 3 32 32 H 1.08997 * 109.46845 * 329.98152 * 1 2 3 33 33 H 1.08004 * 124.93718 * 0.02562 * 3 2 1 34 34 H 1.08010 * 120.24157 * 359.97438 * 6 5 4 35 35 H 0.97001 * 119.99748 * 359.97438 * 10 8 7 36 36 H 1.08995 * 110.36257 * 323.74273 * 13 11 10 37 37 H 1.08997 * 110.36405 * 86.05992 * 13 11 10 38 38 H 0.96998 * 120.00328 * 179.97438 * 18 17 15 39 39 H 1.08993 * 109.88066 * 239.51797 * 23 14 13 40 40 H 1.08996 * 110.00664 * 118.42784 * 23 14 13 41 41 H 0.96693 * 114.00497 * 293.61342 * 26 24 23 42 42 H 1.08001 * 119.77121 * 179.72571 * 27 7 6 43 43 H 1.08001 * 119.92633 * 180.25429 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2708 1.0967 0.0000 4 7 3.5199 0.7344 0.0005 5 6 3.6002 -0.6218 0.0015 6 6 4.6659 -1.5205 0.0028 7 6 4.4094 -2.8878 0.0041 8 6 5.5319 -3.8476 0.0050 9 8 6.6781 -3.4424 0.0041 10 7 5.2857 -5.1726 0.0057 11 6 6.3992 -6.1246 0.0071 12 1 7.2409 -5.7373 0.5812 13 6 6.8291 -6.4795 -1.4383 14 7 7.4586 -7.8080 -1.3293 15 6 8.3804 -8.3282 -2.1982 16 1 8.7036 -7.7509 -3.0518 17 6 8.8994 -9.5973 -1.9819 18 7 8.5051 -10.3010 -0.9418 19 14 10.1573 -10.3065 -3.1668 20 1 10.4311 -9.3229 -4.2452 21 1 11.4155 -10.6010 -2.4350 22 1 9.6259 -11.5589 -3.7618 23 6 6.9336 -8.4818 -0.1326 24 6 5.9477 -7.5077 0.5462 25 1 4.9229 -7.7235 0.2442 26 8 6.0760 -7.5624 1.9683 27 6 3.0890 -3.3572 -0.0013 28 6 2.0435 -2.4807 0.0028 29 6 2.2809 -1.1105 0.0005 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3633 -0.8901 0.5134 32 1 -0.3633 0.8898 0.5141 33 1 1.9234 2.1194 0.0004 34 1 5.6833 -1.1579 0.0029 35 1 4.3711 -5.4959 0.0060 36 1 5.9587 -6.5246 -2.0927 37 1 7.5472 -5.7488 -1.8106 38 1 8.8674 -11.1880 -0.7908 39 1 7.7509 -8.7170 0.5490 40 1 6.4139 -9.3966 -0.4175 41 1 5.8066 -8.4065 2.3554 42 1 2.8977 -4.4201 -0.0048 43 1 1.0293 -2.8518 0.0027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077260558.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:51 Heat of formation + Delta-G solvation = 31.682335 kcal Electronic energy + Delta-G solvation = -27308.472699 eV Core-core repulsion = 23355.734433 eV Total energy + Delta-G solvation = -3952.738266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.47637 -39.84287 -38.03599 -36.91121 -35.05225 -34.68028 -34.03499 -31.77140 -30.86529 -29.86860 -28.31820 -27.54249 -26.91710 -24.70296 -23.65600 -23.02804 -21.03726 -20.80482 -20.44569 -20.10065 -18.06861 -17.51072 -17.19716 -16.72366 -16.55612 -16.22475 -15.76697 -15.18970 -14.66154 -14.51518 -14.37160 -14.14324 -13.90595 -13.88653 -13.65063 -13.40547 -13.11492 -12.91084 -12.64597 -12.47243 -12.06419 -11.84492 -11.78262 -11.44719 -11.23095 -10.86480 -10.81087 -10.73418 -10.29228 -10.11942 -9.88540 -9.82506 -9.82109 -9.30437 -8.85379 -8.68013 -8.59082 -8.41834 -6.88992 -5.74338 -3.08574 0.66592 0.83925 2.18751 2.42110 2.99862 3.25774 3.40808 3.46769 3.49222 3.82041 3.96537 4.15466 4.17449 4.45851 4.57008 4.61759 4.64677 4.75692 4.85391 5.01371 5.06547 5.08199 5.22543 5.39630 5.46189 5.59682 5.68976 5.76604 5.83905 6.02873 6.10314 6.13773 6.15243 6.18809 6.44910 6.55769 6.66786 6.71008 6.92832 7.34365 7.49184 7.50547 7.71293 7.77331 8.13488 8.19507 8.43719 9.17423 9.77416 10.40447 11.37599 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.025971 B = 0.002304 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.870812 B =12148.486998 C =12535.898275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.497 5.497 3 C 0.255 3.745 4 N -0.486 5.486 5 C 0.034 3.966 6 C 0.007 3.993 7 C -0.140 4.140 8 C 0.561 3.439 9 O -0.533 6.533 10 N -0.710 5.710 11 C 0.139 3.861 12 H 0.105 0.895 13 C 0.130 3.870 14 N -0.600 5.600 15 C -0.226 4.226 16 H 0.082 0.918 17 C -0.009 4.009 18 N -0.924 5.924 19 Si 0.915 3.085 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.291 1.291 23 C 0.154 3.846 24 C 0.068 3.932 25 H 0.057 0.943 26 O -0.563 6.563 27 C -0.067 4.067 28 C -0.118 4.118 29 C 0.065 3.935 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.089 0.911 33 H 0.215 0.785 34 H 0.146 0.854 35 H 0.395 0.605 36 H 0.024 0.976 37 H 0.052 0.948 38 H 0.252 0.748 39 H 0.061 0.939 40 H 0.049 0.951 41 H 0.376 0.624 42 H 0.135 0.865 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.190 17.900 4.227 28.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.188 5.188 3 C -0.030 4.030 4 N -0.204 5.204 5 C -0.084 4.084 6 C -0.013 4.013 7 C -0.145 4.145 8 C 0.348 3.652 9 O -0.411 6.411 10 N -0.360 5.360 11 C 0.034 3.966 12 H 0.123 0.877 13 C 0.002 3.998 14 N -0.328 5.328 15 C -0.354 4.354 16 H 0.099 0.901 17 C -0.205 4.205 18 N -0.572 5.572 19 Si 0.745 3.255 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.218 1.218 23 C 0.028 3.972 24 C 0.008 3.992 25 H 0.075 0.925 26 O -0.367 6.367 27 C -0.088 4.088 28 C -0.138 4.138 29 C -0.046 4.046 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.108 0.892 33 H 0.232 0.768 34 H 0.164 0.836 35 H 0.230 0.770 36 H 0.042 0.958 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.223 0.777 42 H 0.152 0.848 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -20.437 19.130 4.112 28.294 hybrid contribution -0.960 -1.649 -0.527 1.979 sum -21.397 17.481 3.585 27.862 Atomic orbital electron populations 1.22006 0.75888 1.04801 1.03645 1.45309 1.07431 1.05554 1.60489 1.25401 0.85088 0.93387 0.99161 1.70491 1.18232 1.10812 1.20843 1.18900 0.91893 0.90269 1.07321 1.20424 0.98535 0.89918 0.92446 1.19670 0.93356 0.93355 1.08151 1.18028 0.88392 0.82250 0.76538 1.90804 1.22102 1.78607 1.49552 1.45803 1.09968 1.05467 1.74807 1.22277 0.89294 0.86817 0.98223 0.87658 1.21858 0.96369 0.88987 0.92558 1.44257 1.48387 1.12458 1.27693 1.19145 1.14660 0.98262 1.03322 0.90060 1.24818 1.00347 0.96998 0.98341 1.69931 1.46465 1.11938 1.28895 0.85990 0.80799 0.78748 0.79917 1.20404 1.21675 1.21760 1.21810 0.94489 0.92133 0.88758 1.23457 0.98601 0.96124 0.80992 0.92524 1.86474 1.90261 1.39945 1.20054 1.20744 0.90981 0.99606 0.97438 1.19526 0.99775 0.88519 1.06025 1.19044 0.91228 0.89529 1.04755 0.90554 0.89663 0.89209 0.76847 0.83643 0.76951 0.95802 0.93004 0.93730 0.92092 0.93305 0.77710 0.84760 0.85531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.20 11.17 59.85 0.67 0.87 16 2 N -0.50 -3.63 3.20 -123.13 -0.39 -4.03 16 3 C 0.26 2.00 12.50 -89.77 -1.12 0.87 16 4 N -0.49 -5.96 11.28 -12.06 -0.14 -6.09 16 5 C 0.03 0.44 7.22 -84.72 -0.61 -0.17 16 6 C 0.01 0.10 9.64 -38.82 -0.37 -0.28 16 7 C -0.14 -1.87 5.87 -105.00 -0.62 -2.49 16 8 C 0.56 9.27 7.76 -12.41 -0.10 9.17 16 9 O -0.53 -10.96 16.01 5.30 0.08 -10.88 16 10 N -0.71 -10.89 5.17 -52.72 -0.27 -11.17 16 11 C 0.14 2.67 3.09 -65.78 -0.20 2.47 16 12 H 0.11 2.33 7.63 -51.93 -0.40 1.94 16 13 C 0.13 2.82 6.93 -2.53 -0.02 2.80 16 14 N -0.60 -15.50 3.39 -170.08 -0.58 -16.08 16 15 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 16 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 17 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 18 N -0.92 -26.93 10.31 55.49 0.57 -26.36 16 19 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 C 0.15 3.65 5.15 -3.06 -0.02 3.64 16 24 C 0.07 1.26 3.96 -24.90 -0.10 1.16 16 25 H 0.06 0.90 8.00 -51.93 -0.42 0.48 16 26 O -0.56 -9.72 13.40 -35.23 -0.47 -10.20 16 27 C -0.07 -0.68 9.47 -39.52 -0.37 -1.05 16 28 C -0.12 -1.05 9.97 -39.93 -0.40 -1.44 16 29 C 0.06 0.67 6.87 -83.95 -0.58 0.09 16 30 H 0.08 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 32 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 33 H 0.22 0.62 8.06 -52.48 -0.42 0.19 16 34 H 0.15 2.16 7.63 -52.48 -0.40 1.76 16 35 H 0.40 4.70 6.54 -40.82 -0.27 4.43 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.06 1.64 7.30 -51.93 -0.38 1.26 16 40 H 0.05 1.24 7.51 -51.93 -0.39 0.85 16 41 H 0.38 4.89 9.12 45.56 0.42 5.30 16 42 H 0.13 1.01 6.36 -52.49 -0.33 0.68 16 43 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 LS Contribution 362.04 15.07 5.46 5.46 Total: -1.00 -37.69 362.04 -9.52 -47.21 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -4.67 Total: 6.10 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: -4.09 Total: 8.76 kcal Atomic # 7 Polarization: -62.92 SS G_CDS: -0.81 Total: -63.73 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: -0.39 Total: -21.07 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.69 -9.52 -47.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077260558.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.896 kcal (2) G-P(sol) polarization free energy of solvation -37.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds