Wall clock time and date at job start Tue Mar 31 2020 06:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36090 * 126.30462 * 2 1 4 4 N 1.30067 * 110.13094 * 179.97438 * 3 2 1 5 5 C 1.35864 * 109.55910 * 359.97438 * 4 3 2 6 6 C 1.39407 * 133.52450 * 180.02562 * 5 4 3 7 7 C 1.39116 * 119.51462 * 179.97438 * 6 5 4 8 8 C 1.47680 * 119.90664 * 179.97438 * 7 6 5 9 9 O 1.21577 * 120.00077 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00435 * 180.02562 * 8 7 6 11 11 C 1.46500 * 120.00200 * 180.02562 * 10 8 7 12 12 H 1.09002 * 110.88857 * 34.29247 * 11 10 8 13 13 C 1.54915 * 111.03417 * 270.38731 * 11 10 8 14 14 N 1.47418 * 104.83107 * 204.89999 * 13 11 10 15 15 C 1.36939 * 125.65017 * 204.17029 * 14 13 11 16 16 H 1.07998 * 119.99534 * 359.97438 * 15 14 13 17 17 C 1.38807 * 120.00342 * 179.97438 * 15 14 13 18 18 N 1.31620 * 119.99981 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00118 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47103 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46701 * 120.00103 * 19 17 15 22 22 H 1.48494 * 109.47419 * 240.00108 * 19 17 15 23 23 C 1.47029 * 108.70495 * 24.13113 * 14 13 11 24 24 C 1.54327 * 107.26790 * 358.93814 * 23 14 13 25 25 H 1.09001 * 110.71543 * 96.16961 * 24 23 14 26 26 O 1.42897 * 110.86707 * 219.37089 * 24 23 14 27 27 C 1.40134 * 120.19246 * 0.25435 * 7 6 5 28 28 C 1.36433 * 120.45640 * 359.48014 * 27 7 6 29 29 C 1.37803 * 126.30482 * 179.97438 * 2 1 3 30 30 H 1.09007 * 109.46881 * 89.97645 * 1 2 3 31 31 H 1.08992 * 109.47033 * 209.97671 * 1 2 3 32 32 H 1.08997 * 109.46845 * 329.98152 * 1 2 3 33 33 H 1.08004 * 124.93718 * 0.02562 * 3 2 1 34 34 H 1.08010 * 120.24157 * 359.97438 * 6 5 4 35 35 H 0.97001 * 119.99748 * 359.97438 * 10 8 7 36 36 H 1.08995 * 110.36257 * 323.74273 * 13 11 10 37 37 H 1.08997 * 110.36405 * 86.05992 * 13 11 10 38 38 H 0.96998 * 120.00328 * 179.97438 * 18 17 15 39 39 H 1.08993 * 109.88066 * 239.51797 * 23 14 13 40 40 H 1.08996 * 110.00664 * 118.42784 * 23 14 13 41 41 H 0.96693 * 114.00497 * 293.61342 * 26 24 23 42 42 H 1.08001 * 119.77121 * 179.72571 * 27 7 6 43 43 H 1.08001 * 119.92633 * 180.25429 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2708 1.0967 0.0000 4 7 3.5199 0.7344 0.0005 5 6 3.6002 -0.6218 0.0015 6 6 4.6659 -1.5205 0.0028 7 6 4.4094 -2.8878 0.0041 8 6 5.5319 -3.8476 0.0050 9 8 6.6781 -3.4424 0.0041 10 7 5.2857 -5.1726 0.0057 11 6 6.3992 -6.1246 0.0071 12 1 7.2409 -5.7373 0.5812 13 6 6.8291 -6.4795 -1.4383 14 7 7.4586 -7.8080 -1.3293 15 6 8.3804 -8.3282 -2.1982 16 1 8.7036 -7.7509 -3.0518 17 6 8.8994 -9.5973 -1.9819 18 7 8.5051 -10.3010 -0.9418 19 14 10.1573 -10.3065 -3.1668 20 1 10.4311 -9.3229 -4.2452 21 1 11.4155 -10.6010 -2.4350 22 1 9.6259 -11.5589 -3.7618 23 6 6.9336 -8.4818 -0.1326 24 6 5.9477 -7.5077 0.5462 25 1 4.9229 -7.7235 0.2442 26 8 6.0760 -7.5624 1.9683 27 6 3.0890 -3.3572 -0.0013 28 6 2.0435 -2.4807 0.0028 29 6 2.2809 -1.1105 0.0005 30 1 -0.3633 0.0004 -1.0277 31 1 -0.3633 -0.8901 0.5134 32 1 -0.3633 0.8898 0.5141 33 1 1.9234 2.1194 0.0004 34 1 5.6833 -1.1579 0.0029 35 1 4.3711 -5.4959 0.0060 36 1 5.9587 -6.5246 -2.0927 37 1 7.5472 -5.7488 -1.8106 38 1 8.8674 -11.1880 -0.7908 39 1 7.7509 -8.7170 0.5490 40 1 6.4139 -9.3966 -0.4175 41 1 5.8066 -8.4065 2.3554 42 1 2.8977 -4.4201 -0.0048 43 1 1.0293 -2.8518 0.0027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077260558.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:02:51 Heat of formation + Delta-G solvation = 2.554699 kcal Electronic energy + Delta-G solvation = -27309.735768 eV Core-core repulsion = 23355.734433 eV Total energy + Delta-G solvation = -3954.001335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.17505 -41.18634 -39.54267 -37.90339 -36.67162 -35.67912 -35.21582 -33.67104 -31.73999 -30.88637 -29.95475 -28.73685 -27.86337 -26.45818 -24.79731 -23.82937 -22.44129 -21.98819 -21.70164 -21.53705 -19.30501 -18.84325 -18.22250 -18.14034 -17.63474 -17.20485 -16.79380 -16.65859 -16.04450 -16.02017 -15.72038 -15.18687 -15.09012 -14.88286 -14.52008 -14.44995 -14.28671 -14.04726 -13.96733 -13.75094 -13.35748 -13.19314 -13.16410 -12.77764 -12.74370 -12.60849 -12.58059 -12.05761 -11.89289 -11.53683 -11.39527 -11.25791 -11.01910 -10.86823 -10.77531 -10.24165 -9.47120 -9.20198 -8.96621 -7.89000 -5.26008 -0.22576 0.04407 1.45395 1.47228 1.57402 1.68732 1.69756 1.93266 1.96243 2.47497 2.84804 3.13180 3.24159 3.32255 3.54307 3.56180 3.69052 3.88877 3.91941 4.00230 4.06733 4.18509 4.25325 4.33406 4.40975 4.46872 4.52409 4.56930 4.65177 4.79907 4.83161 4.96236 5.04295 5.25022 5.29159 5.35029 5.37577 5.42724 5.45728 5.67050 5.70171 6.13764 6.17568 6.50782 6.82435 6.89754 7.05068 7.17996 7.69001 8.31447 9.20930 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.025971 B = 0.002304 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.870812 B =12148.486998 C =12535.898275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.491 5.491 3 C 0.273 3.727 4 N -0.543 5.543 5 C 0.005 3.995 6 C -0.021 4.021 7 C -0.149 4.149 8 C 0.560 3.440 9 O -0.586 6.586 10 N -0.691 5.691 11 C 0.152 3.848 12 H 0.069 0.931 13 C 0.131 3.869 14 N -0.622 5.622 15 C -0.246 4.246 16 H 0.080 0.920 17 C -0.062 4.062 18 N -0.948 5.948 19 Si 0.981 3.019 20 H -0.269 1.269 21 H -0.293 1.293 22 H -0.286 1.286 23 C 0.161 3.839 24 C 0.093 3.907 25 H 0.101 0.899 26 O -0.569 6.569 27 C -0.069 4.069 28 C -0.100 4.100 29 C 0.062 3.938 30 H 0.089 0.911 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.262 0.738 34 H 0.115 0.885 35 H 0.417 0.583 36 H 0.046 0.954 37 H 0.030 0.970 38 H 0.250 0.750 39 H 0.020 0.980 40 H 0.030 0.970 41 H 0.397 0.603 42 H 0.165 0.835 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.672 18.601 4.071 32.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.179 5.179 3 C -0.012 4.012 4 N -0.262 5.262 5 C -0.112 4.112 6 C -0.042 4.042 7 C -0.155 4.155 8 C 0.349 3.651 9 O -0.467 6.467 10 N -0.343 5.343 11 C 0.046 3.954 12 H 0.088 0.912 13 C 0.004 3.996 14 N -0.350 5.350 15 C -0.375 4.375 16 H 0.098 0.902 17 C -0.255 4.255 18 N -0.596 5.596 19 Si 0.809 3.191 20 H -0.194 1.194 21 H -0.220 1.220 22 H -0.212 1.212 23 C 0.035 3.965 24 C 0.033 3.967 25 H 0.118 0.882 26 O -0.377 6.377 27 C -0.089 4.089 28 C -0.120 4.120 29 C -0.050 4.050 30 H 0.108 0.892 31 H 0.115 0.885 32 H 0.136 0.864 33 H 0.277 0.723 34 H 0.133 0.867 35 H 0.256 0.744 36 H 0.064 0.936 37 H 0.049 0.951 38 H 0.059 0.941 39 H 0.038 0.962 40 H 0.048 0.952 41 H 0.247 0.753 42 H 0.183 0.817 43 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -25.016 19.838 3.966 32.173 hybrid contribution 0.330 -1.700 -0.454 1.790 sum -24.687 18.138 3.512 30.834 Atomic orbital electron populations 1.22432 0.72570 1.06874 1.05172 1.45657 1.09186 1.04246 1.58835 1.26331 0.83999 0.95231 0.95688 1.70443 1.21151 1.10806 1.23788 1.19020 0.92937 0.90905 1.08333 1.20296 0.97925 0.91000 0.94947 1.19411 0.93772 0.92052 1.10216 1.18589 0.88611 0.82761 0.75148 1.90776 1.24542 1.79432 1.51907 1.45486 1.10020 1.04519 1.74303 1.21764 0.89692 0.87987 0.96005 0.91230 1.21936 0.96262 0.86819 0.94603 1.44525 1.48469 1.14042 1.27943 1.19466 1.15466 0.98665 1.03873 0.90239 1.25649 1.02345 0.97405 1.00132 1.70127 1.47365 1.11917 1.30218 0.84979 0.78045 0.78046 0.78049 1.19352 1.21964 1.21211 1.21635 0.94137 0.93025 0.87688 1.23148 0.98982 0.93360 0.81242 0.88170 1.86443 1.90535 1.41626 1.19064 1.20998 0.89341 1.01413 0.97123 1.19946 1.01323 0.87515 1.03204 1.19294 0.90662 0.90975 1.04100 0.89213 0.88496 0.86421 0.72268 0.86682 0.74357 0.93611 0.95117 0.94103 0.96216 0.95203 0.75277 0.81738 0.81240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.00 11.17 127.77 1.43 1.43 16 2 N -0.49 -5.38 3.20 -543.47 -1.74 -7.12 16 3 C 0.27 3.55 12.50 180.05 2.25 5.80 16 4 N -0.54 -13.24 11.28 -192.08 -2.17 -15.41 16 5 C 0.01 0.14 7.22 39.40 0.28 0.42 16 6 C -0.02 -0.63 9.64 22.76 0.22 -0.42 16 7 C -0.15 -4.04 5.87 -20.11 -0.12 -4.15 16 8 C 0.56 19.06 7.76 86.74 0.67 19.74 16 9 O -0.59 -25.91 16.01 -3.96 -0.06 -25.98 16 10 N -0.69 -20.63 5.17 -438.97 -2.27 -22.90 16 11 C 0.15 5.89 3.09 46.38 0.14 6.04 16 12 H 0.07 3.24 7.63 -2.39 -0.02 3.22 16 13 C 0.13 5.78 6.93 86.86 0.60 6.38 16 14 N -0.62 -32.98 3.39 -692.00 -2.35 -35.33 16 15 C -0.25 -14.24 10.28 84.03 0.86 -13.37 16 16 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 17 C -0.06 -3.58 5.49 84.86 0.47 -3.11 16 18 N -0.95 -56.62 10.31 21.65 0.22 -56.40 16 19 Si 0.98 46.56 29.55 68.60 2.03 48.59 16 20 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 21 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 22 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 23 C 0.16 7.81 5.15 86.73 0.45 8.25 16 24 C 0.09 3.32 3.96 31.78 0.13 3.44 16 25 H 0.10 2.79 8.00 -2.39 -0.02 2.78 16 26 O -0.57 -18.91 13.40 -148.98 -2.00 -20.90 16 27 C -0.07 -1.19 9.47 22.31 0.21 -0.98 16 28 C -0.10 -1.38 9.97 22.05 0.22 -1.16 16 29 C 0.06 1.12 6.87 39.00 0.27 1.39 16 30 H 0.09 -0.16 8.14 -2.38 -0.02 -0.18 16 31 H 0.10 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.12 -0.60 8.14 -2.39 -0.02 -0.62 16 33 H 0.26 0.42 8.06 -2.91 -0.02 0.40 16 34 H 0.12 3.97 7.63 -2.91 -0.02 3.95 16 35 H 0.42 8.65 6.54 -92.71 -0.61 8.05 16 36 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 39 H 0.02 1.10 7.30 -2.39 -0.02 1.09 16 40 H 0.03 1.54 7.51 -2.39 -0.02 1.53 16 41 H 0.40 9.56 9.12 -74.06 -0.68 8.88 16 42 H 0.17 1.75 6.36 -2.91 -0.02 1.73 16 43 H 0.17 0.91 8.06 -2.91 -0.02 0.89 16 Total: -1.00 -89.67 362.04 -0.46 -90.13 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -0.21 Total: 15.62 kcal Atomic # 6 Polarization: 21.61 SS G_CDS: 8.08 Total: 29.69 kcal Atomic # 7 Polarization: -128.85 SS G_CDS: -8.30 Total: -137.15 kcal Atomic # 8 Polarization: -44.82 SS G_CDS: -2.06 Total: -46.88 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -89.67 -0.46 -90.13 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077260558.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.687 kcal (2) G-P(sol) polarization free energy of solvation -89.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds