Wall clock time and date at job start Tue Mar 31 2020 05:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40390 * 120.22352 * 2 1 4 4 C 1.35027 * 120.44290 * 179.97438 * 3 2 1 5 5 N 1.36528 * 120.59893 * 359.97438 * 4 3 2 6 6 C 1.36247 * 132.78216 * 179.97438 * 5 4 3 7 7 N 1.30180 * 109.82124 * 179.77358 * 6 5 4 8 8 C 1.34890 * 109.73565 * 0.41442 * 7 6 5 9 9 C 1.46279 * 126.49771 * 179.86273 * 8 7 6 10 10 O 1.21780 * 119.99835 * 179.68337 * 9 8 7 11 11 N 1.34779 * 120.00094 * 359.68061 * 9 8 7 12 12 C 1.46506 * 119.99755 * 180.02562 * 11 9 8 13 13 H 1.09003 * 110.64136 * 31.86134 * 12 11 9 14 14 C 1.54334 * 110.99950 * 268.78147 * 12 11 9 15 15 N 1.47021 * 107.26217 * 219.60246 * 14 12 11 16 16 C 1.36942 * 125.64753 * 178.85322 * 15 14 12 17 17 H 1.07999 * 119.99808 * 344.53778 * 16 15 14 18 18 C 1.38811 * 119.99896 * 164.54046 * 16 15 14 19 19 N 1.31619 * 119.99999 * 350.13813 * 18 16 15 20 20 Si 1.86796 * 119.99714 * 169.86832 * 18 16 15 21 21 H 1.48502 * 109.47237 * 265.42801 * 20 18 16 22 22 H 1.48494 * 109.47395 * 25.43286 * 20 18 16 23 23 H 1.48503 * 109.47346 * 145.43375 * 20 18 16 24 24 C 1.47428 * 108.70435 * 358.59014 * 15 14 12 25 25 C 1.54907 * 104.83347 * 24.35359 * 24 15 14 26 26 H 1.08998 * 110.99967 * 81.06533 * 25 24 15 27 27 O 1.42894 * 111.00446 * 204.87959 * 25 24 15 28 28 C 1.37274 * 120.03193 * 0.02562 * 5 4 3 29 29 C 1.36334 * 120.21947 * 179.97438 * 2 1 3 30 30 H 1.08999 * 109.46815 * 90.00497 * 1 2 3 31 31 H 1.09000 * 109.47149 * 210.00335 * 1 2 3 32 32 H 1.09000 * 109.46871 * 330.00068 * 1 2 3 33 33 H 1.08004 * 119.77398 * 359.97438 * 3 2 1 34 34 H 1.08006 * 119.70115 * 180.02562 * 4 3 2 35 35 H 1.08001 * 125.08907 * 359.97438 * 6 5 4 36 36 H 0.96990 * 119.99982 * 0.02562 * 11 9 8 37 37 H 1.08998 * 109.99077 * 100.13440 * 14 12 11 38 38 H 1.08996 * 109.78145 * 338.95929 * 14 12 11 39 39 H 0.97008 * 119.99465 * 179.72105 * 19 18 16 40 40 H 1.08993 * 110.36798 * 143.19699 * 24 15 14 41 41 H 1.09007 * 110.36022 * 265.51517 * 24 15 14 42 42 H 0.96695 * 114.00229 * 298.54685 * 27 25 24 43 43 H 1.08001 * 120.40487 * 0.05994 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2137 1.2131 0.0000 4 6 3.5639 1.2182 0.0005 5 7 4.2634 0.0457 0.0016 6 6 5.5963 -0.2367 0.0018 7 7 5.7742 -1.5262 0.0078 8 6 4.5788 -2.1511 0.0026 9 6 4.3524 -3.5962 0.0038 10 8 3.2162 -4.0345 0.0044 11 7 5.4012 -4.4427 0.0042 12 6 5.1744 -5.8901 0.0048 13 1 4.2590 -6.1358 -0.5335 14 6 5.1190 -6.4406 1.4456 15 7 5.8228 -7.7314 1.4468 16 6 6.0167 -8.5337 2.5395 17 1 5.8684 -8.1377 3.5333 18 6 6.4038 -9.8559 2.3698 19 7 6.3971 -10.3946 1.1689 20 14 6.9415 -10.8682 3.8447 21 1 8.4201 -10.8128 3.9707 22 1 6.3188 -10.3188 5.0758 23 1 6.5131 -12.2781 3.6602 24 6 6.2798 -8.0219 0.0756 25 6 6.3889 -6.6362 -0.6081 26 1 7.3243 -6.1429 -0.3442 27 8 6.2569 -6.7529 -2.0262 28 6 3.5947 -1.1531 0.0016 29 6 2.1932 -1.1781 0.0005 30 1 -0.3633 -0.0001 -1.0277 31 1 -0.3633 -0.8899 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 1.6736 2.1484 -0.0004 34 1 4.0955 2.1584 0.0009 35 1 6.3868 0.4991 0.0008 36 1 6.3061 -4.0936 0.0041 37 1 4.0823 -6.5835 1.7503 38 1 5.6151 -5.7472 2.1247 39 1 6.6716 -11.3174 1.0499 40 1 7.2529 -8.5126 0.0960 41 1 5.5509 -8.6447 -0.4432 42 1 6.9415 -7.2947 -2.4417 43 1 1.6634 -2.1192 0.0000 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077266035.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:31 Heat of formation + Delta-G solvation = 4.144874 kcal Electronic energy + Delta-G solvation = -27570.463020 eV Core-core repulsion = 23616.530641 eV Total energy + Delta-G solvation = -3953.932380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.86563 -40.88993 -39.33962 -38.74582 -36.71986 -35.55035 -35.03991 -33.63965 -32.22749 -30.87352 -30.09405 -28.96604 -27.79817 -26.37158 -24.80256 -23.99556 -22.95460 -22.53065 -21.76701 -21.24726 -19.42038 -18.95868 -18.36688 -17.64948 -17.49517 -17.23750 -17.09651 -16.69225 -16.15857 -15.91686 -15.63646 -15.40659 -15.38875 -15.02702 -14.83906 -14.56154 -14.36447 -14.05761 -13.89350 -13.43205 -13.23045 -13.08619 -12.96213 -12.88471 -12.74701 -12.66708 -12.49038 -12.09667 -11.94386 -11.65915 -11.57121 -11.44602 -11.27294 -10.93091 -10.75646 -10.36510 -10.20330 -8.94193 -8.53915 -7.94418 -5.34560 -0.40267 0.08613 1.24388 1.45592 1.46699 1.48075 1.57601 2.12407 2.25919 2.45998 2.54192 3.02491 3.25034 3.33778 3.42160 3.58631 3.69263 3.74860 3.81711 3.84289 4.00059 4.12930 4.14085 4.24747 4.40077 4.52748 4.53057 4.68758 4.79040 4.81127 4.83695 4.91049 5.00874 5.15350 5.21787 5.24382 5.38546 5.43043 5.45092 5.54901 5.56335 6.10385 6.13558 6.39656 6.71651 6.82368 6.99147 7.19354 7.63259 8.31115 9.17498 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.020283 B = 0.002541 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.110565 B =11017.832831 C =11329.455823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.048 4.048 3 C -0.138 4.138 4 C 0.069 3.931 5 N -0.371 5.371 6 C 0.159 3.841 7 N -0.446 5.446 8 C -0.122 4.122 9 C 0.600 3.400 10 O -0.585 6.585 11 N -0.693 5.693 12 C 0.157 3.843 13 H 0.078 0.922 14 C 0.132 3.868 15 N -0.615 5.615 16 C -0.254 4.254 17 H 0.078 0.922 18 C -0.056 4.056 19 N -0.944 5.944 20 Si 0.984 3.016 21 H -0.281 1.281 22 H -0.269 1.269 23 H -0.292 1.292 24 C 0.160 3.840 25 C 0.092 3.908 26 H 0.086 0.914 27 O -0.567 6.567 28 C 0.084 3.916 29 C -0.134 4.134 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.198 0.802 34 H 0.225 0.775 35 H 0.268 0.732 36 H 0.414 0.586 37 H 0.014 0.986 38 H 0.038 0.962 39 H 0.253 0.747 40 H 0.047 0.953 41 H 0.010 0.990 42 H 0.397 0.603 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.891 31.418 -5.002 32.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.052 4.052 3 C -0.157 4.157 4 C -0.051 4.051 5 N -0.042 5.042 6 C -0.118 4.118 7 N -0.160 5.160 8 C -0.252 4.252 9 C 0.390 3.610 10 O -0.466 6.466 11 N -0.343 5.343 12 C 0.051 3.949 13 H 0.097 0.903 14 C 0.006 3.994 15 N -0.343 5.343 16 C -0.383 4.383 17 H 0.096 0.904 18 C -0.251 4.251 19 N -0.591 5.591 20 Si 0.812 3.188 21 H -0.207 1.207 22 H -0.194 1.194 23 H -0.218 1.218 24 C 0.034 3.966 25 C 0.031 3.969 26 H 0.104 0.896 27 O -0.374 6.374 28 C -0.030 4.030 29 C -0.153 4.153 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.119 0.881 33 H 0.215 0.785 34 H 0.241 0.759 35 H 0.283 0.717 36 H 0.251 0.749 37 H 0.032 0.968 38 H 0.056 0.944 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.028 0.972 42 H 0.248 0.752 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.222 30.900 -4.858 31.712 hybrid contribution 0.341 -1.366 0.553 1.512 sum -4.881 29.534 -4.305 30.243 Atomic orbital electron populations 1.20926 0.87930 1.04472 1.03945 1.20449 0.98641 0.91902 0.94209 1.21397 0.92560 0.99882 1.01902 1.22740 0.93626 0.88823 0.99958 1.43282 1.08653 1.06407 1.45822 1.25996 0.83237 0.93738 1.08862 1.69913 1.25436 1.06184 1.14459 1.20017 0.89340 0.92364 1.23485 1.16944 0.84244 0.84713 0.75099 1.90761 1.23518 1.78755 1.53551 1.45498 1.09803 1.04825 1.74157 1.21547 0.98720 0.79451 0.95192 0.90346 1.21671 0.94985 0.88048 0.94721 1.44527 1.63897 1.20036 1.05801 1.19392 1.41139 0.91575 0.86192 0.90412 1.25804 1.02139 0.97174 0.99956 1.70135 1.52995 1.13594 1.22388 0.84988 0.78055 0.77323 0.78476 1.20703 1.19401 1.21820 1.21766 0.98093 0.92261 0.84445 1.23219 0.96641 0.95979 0.81032 0.89604 1.86402 1.57343 1.74950 1.18727 1.19320 0.93625 0.86077 1.03999 1.20575 0.89646 1.00663 1.04457 0.89301 0.91767 0.88087 0.78504 0.75873 0.71680 0.74924 0.96771 0.94384 0.93835 0.93434 0.97178 0.75243 0.85168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.10 10.03 71.24 0.71 -0.38 16 2 C -0.05 -0.70 5.89 -19.78 -0.12 -0.82 16 3 C -0.14 -0.99 9.67 22.05 0.21 -0.78 16 4 C 0.07 0.52 10.95 83.22 0.91 1.43 16 5 N -0.37 -6.49 2.94 -350.65 -1.03 -7.52 16 6 C 0.16 2.77 12.73 179.97 2.29 5.06 16 7 N -0.45 -12.32 10.90 -187.25 -2.04 -14.36 16 8 C -0.12 -4.04 7.05 41.23 0.29 -3.75 16 9 C 0.60 24.01 7.77 86.33 0.67 24.68 16 10 O -0.58 -26.77 15.40 -4.60 -0.07 -26.84 16 11 N -0.69 -26.49 5.11 -441.15 -2.26 -28.74 16 12 C 0.16 6.82 3.04 46.18 0.14 6.97 16 13 H 0.08 3.80 7.55 -2.39 -0.02 3.79 16 14 C 0.13 6.47 7.01 86.73 0.61 7.08 16 15 N -0.61 -33.98 3.39 -691.97 -2.35 -36.32 16 16 C -0.25 -14.95 10.21 84.03 0.86 -14.10 16 17 H 0.08 4.43 7.85 -2.91 -0.02 4.41 16 18 C -0.06 -3.28 5.38 84.86 0.46 -2.82 16 19 N -0.94 -57.46 10.92 21.65 0.24 -57.23 16 20 Si 0.98 46.44 29.57 68.60 2.03 48.47 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 24 C 0.16 8.20 5.09 86.85 0.44 8.64 16 25 C 0.09 3.74 4.06 31.99 0.13 3.87 16 26 H 0.09 3.14 8.01 -2.39 -0.02 3.12 16 27 O -0.57 -20.83 13.47 -148.98 -2.01 -22.84 16 28 C 0.08 2.32 6.72 39.23 0.26 2.58 16 29 C -0.13 -3.32 9.38 22.30 0.21 -3.11 16 30 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.78 8.08 -2.39 -0.02 0.76 16 32 H 0.10 0.39 8.10 -2.39 -0.02 0.37 16 33 H 0.20 -0.36 8.06 -2.91 -0.02 -0.38 16 34 H 0.22 -0.78 8.06 -2.91 -0.02 -0.80 16 35 H 0.27 1.43 8.06 -2.91 -0.02 1.41 16 36 H 0.41 14.11 8.26 -92.72 -0.77 13.35 16 37 H 0.01 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.04 1.80 8.03 -2.39 -0.02 1.78 16 39 H 0.25 14.76 8.31 -92.70 -0.77 13.99 16 40 H 0.05 2.56 7.31 -2.39 -0.02 2.55 16 41 H 0.01 0.58 7.95 -2.38 -0.02 0.57 16 42 H 0.40 10.91 9.11 -74.06 -0.67 10.24 16 43 H 0.13 3.88 7.17 -2.91 -0.02 3.86 16 Total: -1.00 -87.26 364.20 0.22 -87.04 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: -0.38 Total: 23.80 kcal Atomic # 6 Polarization: 26.46 SS G_CDS: 8.08 Total: 34.54 kcal Atomic # 7 Polarization: -136.73 SS G_CDS: -7.44 Total: -144.17 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -2.08 Total: -49.68 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -87.26 0.22 -87.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077266035.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.188 kcal (2) G-P(sol) polarization free energy of solvation -87.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds