Wall clock time and date at job start Tue Mar 31 2020 04:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39062 * 119.35708 * 2 1 4 4 C 1.35709 * 122.67309 * 180.29613 * 3 2 1 5 5 C 1.41018 * 120.59379 * 359.75395 * 4 3 2 6 6 N 1.32138 * 134.69771 * 179.97438 * 5 4 3 7 7 N 1.39990 * 108.88581 * 180.02562 * 6 5 4 8 8 H 0.97000 * 125.06402 * 180.02562 * 7 6 5 9 9 C 1.34241 * 109.87085 * 359.97438 * 7 6 5 10 10 C 1.37567 * 107.93180 * 0.02562 * 9 7 6 11 11 C 1.38458 * 119.35776 * 179.77898 * 2 1 3 12 12 C 1.47304 * 120.74370 * 359.97438 * 11 2 1 13 13 O 1.21627 * 119.99836 * 269.72524 * 12 11 2 14 14 N 1.34770 * 119.99623 * 89.72282 * 12 11 2 15 15 C 1.46506 * 119.99803 * 180.02562 * 14 12 11 16 16 H 1.08997 * 110.91739 * 37.44409 * 15 14 12 17 17 C 1.54914 * 111.00108 * 273.54334 * 15 14 12 18 18 N 1.47424 * 104.83297 * 204.91524 * 17 15 14 19 19 C 1.36929 * 125.64830 * 204.09112 * 18 17 15 20 20 H 1.08004 * 120.00341 * 0.27955 * 19 18 17 21 21 C 1.38815 * 120.00031 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99916 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99958 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47093 * 60.00562 * 23 21 19 25 25 H 1.48495 * 109.47002 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47239 * 300.00281 * 23 21 19 27 27 C 1.47020 * 108.70055 * 24.35724 * 18 17 15 28 28 C 1.54336 * 107.26729 * 358.58390 * 27 18 17 29 29 H 1.09005 * 110.66569 * 96.52538 * 28 27 18 30 30 O 1.42898 * 110.84754 * 219.67265 * 28 27 18 31 31 H 1.09004 * 109.47476 * 270.21490 * 1 2 3 32 32 H 1.08997 * 109.47251 * 30.22200 * 1 2 3 33 33 H 1.09007 * 109.47268 * 150.22080 * 1 2 3 34 34 H 1.08002 * 118.65968 * 0.05047 * 3 2 1 35 35 H 1.07994 * 119.69980 * 179.77318 * 4 3 2 36 36 H 1.08006 * 126.03100 * 179.97438 * 9 7 6 37 37 H 0.96999 * 120.00449 * 0.02562 * 14 12 11 38 38 H 1.09000 * 110.36358 * 86.07730 * 17 15 14 39 39 H 1.08995 * 110.36625 * 323.75628 * 17 15 14 40 40 H 0.97000 * 120.00284 * 179.97438 * 22 21 19 41 41 H 1.08996 * 109.88473 * 118.13169 * 27 18 17 42 42 H 1.09004 * 109.88289 * 239.29419 * 27 18 17 43 43 H 0.96698 * 114.00088 * 293.68783 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2120 0.0000 4 6 3.5435 1.2905 -0.0059 5 6 4.3302 0.1202 -0.0072 6 7 5.6282 -0.1271 -0.0127 7 7 5.8255 -1.5130 -0.0114 8 1 6.6900 -1.9529 -0.0143 9 6 4.6399 -2.1426 -0.0045 10 6 3.6519 -1.1853 -0.0017 11 6 2.1858 -1.2068 0.0047 12 6 1.4515 -2.4837 0.0101 13 8 1.1532 -3.0091 1.0657 14 7 1.1103 -3.0698 -1.1545 15 6 0.3795 -4.3396 -1.1491 16 1 -0.3476 -4.3666 -0.3375 17 6 1.3540 -5.5406 -1.0619 18 7 0.6183 -6.6680 -1.6628 19 6 0.8466 -7.9945 -1.4114 20 1 1.6199 -8.2872 -0.7166 21 6 0.0799 -8.9630 -2.0448 22 7 -0.8661 -8.6061 -2.8874 23 14 0.3909 -10.7726 -1.7014 24 1 0.1884 -11.0440 -0.2555 25 1 -0.5537 -11.5969 -2.4972 26 1 1.7856 -11.1156 -2.0788 27 6 -0.3968 -6.1323 -2.5814 28 6 -0.3053 -4.5929 -2.5180 29 1 0.3087 -4.2102 -3.3332 30 8 -1.6071 -4.0044 -2.5487 31 1 -0.3634 0.0039 1.0277 32 1 -0.3633 0.8880 -0.5173 33 1 -0.3634 -0.8920 -0.5104 34 1 1.6167 2.1281 0.0008 35 1 4.0234 2.2580 -0.0093 36 1 4.4884 -3.2120 -0.0024 37 1 1.3485 -2.6509 -1.9964 38 1 1.5967 -5.7574 -0.0216 39 1 2.2617 -5.3346 -1.6290 40 1 -1.4016 -9.2828 -3.3304 41 1 -0.1968 -6.4760 -3.5962 42 1 -1.3891 -6.4561 -2.2671 43 1 -2.0779 -4.1342 -3.3833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077267017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:24 Heat of formation + Delta-G solvation = 43.124789 kcal Electronic energy + Delta-G solvation = -28101.153326 eV Core-core repulsion = 24148.911243 eV Total energy + Delta-G solvation = -3952.242084 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.44054 -39.73983 -38.05841 -37.17719 -35.09417 -34.04485 -32.90423 -31.75649 -31.12534 -30.21554 -28.46872 -27.34846 -26.62512 -24.67214 -24.11301 -22.34780 -21.25096 -20.60670 -20.33216 -19.72756 -18.44458 -17.67469 -17.06270 -16.77648 -16.04989 -15.77557 -15.46675 -15.29193 -15.06813 -14.70044 -14.18663 -14.00791 -13.76365 -13.52279 -13.37718 -13.16815 -12.71155 -12.48971 -12.39788 -12.10294 -12.02422 -11.74703 -11.59964 -11.51045 -11.28797 -10.94912 -10.93459 -10.82258 -10.36767 -10.21006 -9.93876 -9.86954 -9.77754 -9.33412 -8.95493 -8.88000 -8.66270 -7.81713 -6.94887 -5.79142 -3.13861 0.24346 1.59956 2.07910 2.42163 2.69603 3.25301 3.37738 3.42104 3.43100 3.53098 3.99862 4.39511 4.44966 4.59204 4.68523 4.77700 4.93517 5.06527 5.16025 5.20912 5.32400 5.40964 5.48666 5.54936 5.58830 5.62781 5.75001 5.78814 5.95072 6.03859 6.10118 6.12994 6.17933 6.36494 6.47004 6.55997 6.57137 6.81957 6.83697 7.29363 7.30828 7.43306 7.62522 7.70811 8.08627 8.14342 8.32711 9.11970 9.72146 10.35024 11.32490 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.016934 B = 0.003130 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.089841 B = 8944.946952 C =10095.976606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.077 4.077 3 C -0.074 4.074 4 C -0.087 4.087 5 C 0.102 3.898 6 N -0.301 5.301 7 N -0.428 5.428 8 H 0.445 0.555 9 C 0.090 3.910 10 C -0.182 4.182 11 C -0.051 4.051 12 C 0.564 3.436 13 O -0.526 6.526 14 N -0.707 5.707 15 C 0.138 3.862 16 H 0.104 0.896 17 C 0.131 3.869 18 N -0.599 5.599 19 C -0.231 4.231 20 H 0.080 0.920 21 C -0.006 4.006 22 N -0.924 5.924 23 Si 0.915 3.085 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.154 3.846 28 C 0.069 3.931 29 H 0.057 0.943 30 O -0.563 6.563 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.190 0.810 37 H 0.399 0.601 38 H 0.051 0.949 39 H 0.022 0.978 40 H 0.254 0.746 41 H 0.048 0.952 42 H 0.062 0.938 43 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.372 19.119 0.871 20.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.079 4.079 3 C -0.096 4.096 4 C -0.108 4.108 5 C -0.053 4.053 6 N -0.129 5.129 7 N -0.129 5.129 8 H 0.290 0.710 9 C -0.066 4.066 10 C -0.192 4.192 11 C -0.056 4.056 12 C 0.349 3.651 13 O -0.402 6.402 14 N -0.357 5.357 15 C 0.033 3.967 16 H 0.122 0.878 17 C 0.003 3.997 18 N -0.327 5.327 19 C -0.359 4.359 20 H 0.098 0.902 21 C -0.203 4.203 22 N -0.571 5.571 23 Si 0.745 3.255 24 H -0.210 1.210 25 H -0.215 1.215 26 H -0.211 1.211 27 C 0.028 3.972 28 C 0.009 3.991 29 H 0.075 0.925 30 O -0.368 6.368 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.206 0.794 37 H 0.233 0.767 38 H 0.069 0.931 39 H 0.040 0.960 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.080 0.920 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 8.424 19.215 2.163 21.092 hybrid contribution -0.123 -1.677 -0.876 1.896 sum 8.301 17.538 1.287 19.446 Atomic orbital electron populations 1.20878 0.90364 1.03318 1.03025 1.19634 0.96146 0.91222 1.00878 1.20391 0.93608 0.97298 0.98342 1.19873 0.92502 0.95343 1.03090 1.20844 0.90391 0.94444 0.99594 1.77664 1.15517 0.90122 1.29635 1.46301 1.08347 1.05306 1.52983 0.70990 1.22599 0.85113 0.99142 0.99727 1.20108 0.92173 0.92315 1.14619 1.20038 0.90140 0.92945 1.02514 1.18091 0.78830 0.83888 0.84292 1.90860 1.54082 1.64370 1.30899 1.46017 1.57669 1.23854 1.08148 1.22291 0.93979 0.82155 0.98289 0.87846 1.21839 0.93313 0.86850 0.97683 1.44224 1.38466 1.00897 1.49124 1.19033 1.15193 0.79973 1.21655 0.90213 1.24811 0.98038 0.98258 0.99146 1.69906 1.23467 1.32001 1.31706 0.86152 0.77300 0.84324 0.77703 1.21013 1.21540 1.21130 1.21827 0.94884 0.85310 0.95179 1.23438 0.83566 0.96645 0.95419 0.92480 1.86459 1.29945 1.78829 1.41535 0.90642 0.90984 0.91086 0.84994 0.85144 0.79356 0.76651 0.93081 0.96006 0.93568 0.93341 0.92012 0.77616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.58 36.00 0.34 -0.88 16 2 C -0.08 -0.87 5.91 -104.24 -0.62 -1.49 16 3 C -0.07 -0.69 9.45 -40.18 -0.38 -1.07 16 4 C -0.09 -0.88 10.02 -39.43 -0.40 -1.28 16 5 C 0.10 1.26 7.49 -83.08 -0.62 0.64 16 6 N -0.30 -3.67 12.71 33.24 0.42 -3.24 16 7 N -0.43 -4.00 7.20 30.75 0.22 -3.78 16 8 H 0.45 2.46 8.96 -182.68 -1.64 0.82 16 9 C 0.09 0.95 12.00 -16.74 -0.20 0.75 16 10 C -0.18 -2.31 6.35 -103.15 -0.65 -2.97 16 11 C -0.05 -0.68 5.80 -102.74 -0.60 -1.27 16 12 C 0.56 8.78 5.67 -12.58 -0.07 8.71 16 13 O -0.53 -10.33 16.85 5.25 0.09 -10.24 16 14 N -0.71 -10.31 5.21 -52.84 -0.28 -10.59 16 15 C 0.14 2.51 3.04 -65.78 -0.20 2.31 16 16 H 0.10 2.17 7.73 -51.93 -0.40 1.77 16 17 C 0.13 2.69 6.93 -2.53 -0.02 2.67 16 18 N -0.60 -14.97 3.39 -170.07 -0.58 -15.54 16 19 C -0.23 -6.32 10.28 -15.06 -0.15 -6.48 16 20 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 21 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 22 N -0.92 -26.34 10.31 55.49 0.57 -25.77 16 23 Si 0.92 21.76 29.55 -169.99 -5.02 16.74 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 27 C 0.15 3.55 5.16 -3.06 -0.02 3.53 16 28 C 0.07 1.23 3.94 -24.89 -0.10 1.13 16 29 H 0.06 0.89 7.99 -51.93 -0.42 0.47 16 30 O -0.56 -9.27 13.39 -35.23 -0.47 -9.74 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 32 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 33 H 0.07 0.85 7.01 -51.93 -0.36 0.48 16 34 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 35 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.19 1.63 8.06 -52.48 -0.42 1.21 16 37 H 0.40 4.85 8.50 -40.82 -0.35 4.50 16 38 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 41 H 0.05 1.21 7.52 -51.93 -0.39 0.82 16 42 H 0.06 1.62 7.28 -51.93 -0.38 1.24 16 43 H 0.38 4.67 9.12 45.56 0.42 5.09 16 LS Contribution 363.99 15.07 5.49 5.49 Total: -1.00 -35.36 363.99 -9.35 -44.71 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -6.02 Total: 7.94 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: -3.77 Total: 4.03 kcal Atomic # 7 Polarization: -59.29 SS G_CDS: 0.36 Total: -58.93 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -0.38 Total: -19.98 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.36 -9.35 -44.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077267017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.832 kcal (2) G-P(sol) polarization free energy of solvation -35.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds