Wall clock time and date at job start Tue Mar 31 2020 04:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.39062 * 119.35708 * 2 1 4 4 C 1.35709 * 122.67309 * 180.29613 * 3 2 1 5 5 C 1.41018 * 120.59379 * 359.75395 * 4 3 2 6 6 N 1.32138 * 134.69771 * 179.97438 * 5 4 3 7 7 N 1.39990 * 108.88581 * 180.02562 * 6 5 4 8 8 H 0.97000 * 125.06402 * 180.02562 * 7 6 5 9 9 C 1.34241 * 109.87085 * 359.97438 * 7 6 5 10 10 C 1.37567 * 107.93180 * 0.02562 * 9 7 6 11 11 C 1.38458 * 119.35776 * 179.77898 * 2 1 3 12 12 C 1.47304 * 120.74370 * 359.97438 * 11 2 1 13 13 O 1.21627 * 119.99836 * 269.72524 * 12 11 2 14 14 N 1.34770 * 119.99623 * 89.72282 * 12 11 2 15 15 C 1.46506 * 119.99803 * 180.02562 * 14 12 11 16 16 H 1.08997 * 110.91739 * 37.44409 * 15 14 12 17 17 C 1.54914 * 111.00108 * 273.54334 * 15 14 12 18 18 N 1.47424 * 104.83297 * 204.91524 * 17 15 14 19 19 C 1.36929 * 125.64830 * 204.09112 * 18 17 15 20 20 H 1.08004 * 120.00341 * 0.27955 * 19 18 17 21 21 C 1.38815 * 120.00031 * 179.97438 * 19 18 17 22 22 N 1.31617 * 119.99916 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99958 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47093 * 60.00562 * 23 21 19 25 25 H 1.48495 * 109.47002 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47239 * 300.00281 * 23 21 19 27 27 C 1.47020 * 108.70055 * 24.35724 * 18 17 15 28 28 C 1.54336 * 107.26729 * 358.58390 * 27 18 17 29 29 H 1.09005 * 110.66569 * 96.52538 * 28 27 18 30 30 O 1.42898 * 110.84754 * 219.67265 * 28 27 18 31 31 H 1.09004 * 109.47476 * 270.21490 * 1 2 3 32 32 H 1.08997 * 109.47251 * 30.22200 * 1 2 3 33 33 H 1.09007 * 109.47268 * 150.22080 * 1 2 3 34 34 H 1.08002 * 118.65968 * 0.05047 * 3 2 1 35 35 H 1.07994 * 119.69980 * 179.77318 * 4 3 2 36 36 H 1.08006 * 126.03100 * 179.97438 * 9 7 6 37 37 H 0.96999 * 120.00449 * 0.02562 * 14 12 11 38 38 H 1.09000 * 110.36358 * 86.07730 * 17 15 14 39 39 H 1.08995 * 110.36625 * 323.75628 * 17 15 14 40 40 H 0.97000 * 120.00284 * 179.97438 * 22 21 19 41 41 H 1.08996 * 109.88473 * 118.13169 * 27 18 17 42 42 H 1.09004 * 109.88289 * 239.29419 * 27 18 17 43 43 H 0.96698 * 114.00088 * 293.68783 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2120 0.0000 4 6 3.5435 1.2905 -0.0059 5 6 4.3302 0.1202 -0.0072 6 7 5.6282 -0.1271 -0.0127 7 7 5.8255 -1.5130 -0.0114 8 1 6.6900 -1.9529 -0.0143 9 6 4.6399 -2.1426 -0.0045 10 6 3.6519 -1.1853 -0.0017 11 6 2.1858 -1.2068 0.0047 12 6 1.4515 -2.4837 0.0101 13 8 1.1532 -3.0091 1.0657 14 7 1.1103 -3.0698 -1.1545 15 6 0.3795 -4.3396 -1.1491 16 1 -0.3476 -4.3666 -0.3375 17 6 1.3540 -5.5406 -1.0619 18 7 0.6183 -6.6680 -1.6628 19 6 0.8466 -7.9945 -1.4114 20 1 1.6199 -8.2872 -0.7166 21 6 0.0799 -8.9630 -2.0448 22 7 -0.8661 -8.6061 -2.8874 23 14 0.3909 -10.7726 -1.7014 24 1 0.1884 -11.0440 -0.2555 25 1 -0.5537 -11.5969 -2.4972 26 1 1.7856 -11.1156 -2.0788 27 6 -0.3968 -6.1323 -2.5814 28 6 -0.3053 -4.5929 -2.5180 29 1 0.3087 -4.2102 -3.3332 30 8 -1.6071 -4.0044 -2.5487 31 1 -0.3634 0.0039 1.0277 32 1 -0.3633 0.8880 -0.5173 33 1 -0.3634 -0.8920 -0.5104 34 1 1.6167 2.1281 0.0008 35 1 4.0234 2.2580 -0.0093 36 1 4.4884 -3.2120 -0.0024 37 1 1.3485 -2.6509 -1.9964 38 1 1.5967 -5.7574 -0.0216 39 1 2.2617 -5.3346 -1.6290 40 1 -1.4016 -9.2828 -3.3304 41 1 -0.1968 -6.4760 -3.5962 42 1 -1.3891 -6.4561 -2.2671 43 1 -2.0779 -4.1342 -3.3833 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077267017.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:56:23 Heat of formation + Delta-G solvation = 15.024270 kcal Electronic energy + Delta-G solvation = -28102.371856 eV Core-core repulsion = 24148.911243 eV Total energy + Delta-G solvation = -3953.460614 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.28536 -41.03329 -39.49064 -38.14727 -36.66243 -35.56563 -33.91003 -33.43011 -32.05973 -31.05634 -30.16586 -28.86565 -27.72772 -26.36412 -25.09630 -23.47562 -22.32123 -22.07842 -21.84320 -20.88686 -19.25383 -19.11163 -18.55920 -18.17882 -17.39776 -17.01203 -16.55401 -16.39805 -16.13643 -15.90936 -15.78618 -15.46000 -15.01421 -14.67876 -14.45410 -14.34047 -14.18693 -14.09877 -13.75141 -13.17472 -13.15500 -13.14902 -12.84937 -12.76928 -12.69874 -12.54968 -12.36598 -12.13749 -11.91371 -11.87242 -11.54786 -11.24733 -11.05413 -10.78824 -10.75433 -10.23109 -9.74599 -8.96574 -8.67567 -7.88269 -5.25335 -0.58138 0.76949 1.22329 1.42960 1.46468 1.49437 1.55417 1.74004 2.05436 2.48113 2.67356 3.13089 3.18503 3.32423 3.53362 3.57050 3.79610 3.91569 3.92220 4.05784 4.11929 4.19718 4.32437 4.40913 4.45182 4.55771 4.57814 4.74431 4.82129 4.82715 4.91068 4.98488 5.19460 5.32147 5.36356 5.38413 5.40547 5.45373 5.55161 5.67154 5.78781 6.13859 6.16785 6.44143 6.49286 6.88109 7.04905 7.12312 7.69851 8.32124 9.21193 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.016934 B = 0.003130 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1653.089841 B = 8944.946952 C =10095.976606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.068 4.068 3 C -0.071 4.071 4 C -0.086 4.086 5 C 0.085 3.915 6 N -0.322 5.322 7 N -0.413 5.413 8 H 0.460 0.540 9 C 0.090 3.910 10 C -0.205 4.205 11 C -0.079 4.079 12 C 0.573 3.427 13 O -0.573 6.573 14 N -0.690 5.690 15 C 0.153 3.847 16 H 0.072 0.928 17 C 0.132 3.868 18 N -0.621 5.621 19 C -0.249 4.249 20 H 0.082 0.918 21 C -0.060 4.060 22 N -0.947 5.947 23 Si 0.979 3.021 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.274 1.274 27 C 0.161 3.839 28 C 0.093 3.907 29 H 0.093 0.907 30 O -0.567 6.567 31 H 0.072 0.928 32 H 0.103 0.897 33 H 0.051 0.949 34 H 0.170 0.830 35 H 0.155 0.845 36 H 0.204 0.796 37 H 0.415 0.585 38 H 0.036 0.964 39 H 0.044 0.956 40 H 0.249 0.751 41 H 0.026 0.974 42 H 0.022 0.978 43 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.370 21.221 0.361 22.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.071 4.071 3 C -0.093 4.093 4 C -0.107 4.107 5 C -0.069 4.069 6 N -0.151 5.151 7 N -0.116 5.116 8 H 0.308 0.692 9 C -0.067 4.067 10 C -0.215 4.215 11 C -0.084 4.084 12 C 0.361 3.639 13 O -0.452 6.452 14 N -0.341 5.341 15 C 0.047 3.953 16 H 0.090 0.910 17 C 0.005 3.995 18 N -0.349 5.349 19 C -0.378 4.378 20 H 0.100 0.900 21 C -0.253 4.253 22 N -0.596 5.596 23 Si 0.807 3.193 24 H -0.207 1.207 25 H -0.218 1.218 26 H -0.200 1.200 27 C 0.035 3.965 28 C 0.032 3.968 29 H 0.111 0.889 30 O -0.375 6.375 31 H 0.090 0.910 32 H 0.122 0.878 33 H 0.070 0.930 34 H 0.187 0.813 35 H 0.173 0.827 36 H 0.221 0.779 37 H 0.253 0.747 38 H 0.054 0.946 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.044 0.956 42 H 0.040 0.960 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 9.461 21.360 1.622 23.418 hybrid contribution -0.423 -2.275 -0.689 2.415 sum 9.038 19.085 0.933 21.137 Atomic orbital electron populations 1.20924 0.89758 1.03909 1.02995 1.19938 0.96700 0.91383 0.99040 1.20716 0.93562 0.97728 0.97330 1.20274 0.92807 0.95736 1.01887 1.21245 0.90501 0.95133 0.99980 1.77586 1.15701 0.91426 1.30376 1.46293 1.08926 1.04580 1.51839 0.69164 1.22844 0.85100 0.99652 0.99080 1.20306 0.92168 0.93265 1.15773 1.19860 0.90462 0.92123 1.05963 1.18444 0.77817 0.84256 0.83430 1.90834 1.55963 1.65845 1.32561 1.45767 1.56900 1.22427 1.08999 1.21782 0.93023 0.82925 0.97573 0.90961 1.21925 0.94199 0.86596 0.96739 1.44491 1.39325 1.01267 1.49824 1.19406 1.15227 0.81575 1.21543 0.90027 1.25631 0.98111 1.02274 0.99325 1.70113 1.24188 1.32766 1.32510 0.85148 0.77406 0.79350 0.77384 1.20679 1.21795 1.19996 1.21629 0.92440 0.89069 0.93320 1.23115 0.84797 0.92786 0.96060 0.88912 1.86428 1.29593 1.78066 1.43393 0.90966 0.87800 0.93028 0.81290 0.82742 0.77941 0.74732 0.94602 0.93838 0.94149 0.95598 0.96018 0.75328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.21 9.58 71.23 0.68 -1.53 16 2 C -0.07 -1.41 5.91 -19.62 -0.12 -1.53 16 3 C -0.07 -1.10 9.45 21.88 0.21 -0.89 16 4 C -0.09 -1.51 10.02 22.37 0.22 -1.28 16 5 C 0.09 1.97 7.49 42.11 0.32 2.29 16 6 N -0.32 -7.35 12.71 -48.76 -0.62 -7.97 16 7 N -0.41 -7.15 7.20 -56.62 -0.41 -7.55 16 8 H 0.46 4.40 8.96 -213.39 -1.91 2.49 16 9 C 0.09 1.80 12.00 84.17 1.01 2.81 16 10 C -0.20 -4.98 6.35 -18.91 -0.12 -5.10 16 11 C -0.08 -2.01 5.80 -18.65 -0.11 -2.12 16 12 C 0.57 17.73 5.67 86.63 0.49 18.22 16 13 O -0.57 -23.02 16.85 -4.12 -0.07 -23.09 16 14 N -0.69 -19.51 5.21 -439.33 -2.29 -21.79 16 15 C 0.15 5.57 3.04 46.38 0.14 5.71 16 16 H 0.07 3.13 7.73 -2.39 -0.02 3.11 16 17 C 0.13 5.48 6.93 86.86 0.60 6.08 16 18 N -0.62 -31.68 3.39 -691.97 -2.35 -34.03 16 19 C -0.25 -13.92 10.28 84.04 0.86 -13.06 16 20 H 0.08 4.39 7.83 -2.91 -0.02 4.36 16 21 C -0.06 -3.37 5.49 84.86 0.47 -2.90 16 22 N -0.95 -55.51 10.31 21.65 0.22 -55.29 16 23 Si 0.98 45.27 29.55 68.60 2.03 47.30 16 24 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 26 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 27 C 0.16 7.62 5.16 86.73 0.45 8.06 16 28 C 0.09 3.20 3.94 31.78 0.13 3.33 16 29 H 0.09 2.62 7.99 -2.38 -0.02 2.60 16 30 O -0.57 -18.03 13.39 -148.98 -2.00 -20.02 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.10 1.23 8.08 -2.39 -0.02 1.21 16 33 H 0.05 1.16 7.01 -2.38 -0.02 1.15 16 34 H 0.17 1.31 8.06 -2.91 -0.02 1.28 16 35 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 36 H 0.20 3.30 8.06 -2.91 -0.02 3.27 16 37 H 0.42 9.22 8.50 -92.71 -0.79 8.44 16 38 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 41 H 0.03 1.32 7.52 -2.39 -0.02 1.30 16 42 H 0.02 1.18 7.28 -2.39 -0.02 1.17 16 43 H 0.40 9.21 9.12 -74.06 -0.68 8.54 16 Total: -1.00 -79.25 363.99 -2.53 -81.79 By element: Atomic # 1 Polarization: 24.87 SS G_CDS: -2.29 Total: 22.58 kcal Atomic # 6 Polarization: 12.85 SS G_CDS: 5.23 Total: 18.08 kcal Atomic # 7 Polarization: -121.20 SS G_CDS: -5.44 Total: -126.64 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -2.06 Total: -43.12 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Total: -79.25 -2.53 -81.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077267017.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.810 kcal (2) G-P(sol) polarization free energy of solvation -79.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.785 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds