Wall clock time and date at job start Tue Mar 31 2020 04:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36323 * 119.74707 * 2 1 4 4 C 1.47518 * 120.16823 * 359.97438 * 3 2 1 5 5 O 1.21600 * 119.99915 * 353.76108 * 4 3 2 6 6 N 1.34780 * 120.00129 * 173.77080 * 4 3 2 7 7 C 1.46497 * 119.99933 * 180.02562 * 6 4 3 8 8 H 1.09000 * 110.64592 * 36.68374 * 7 6 4 9 9 C 1.54324 * 110.71936 * 273.53785 * 7 6 4 10 10 N 1.47021 * 107.27631 * 219.44539 * 9 7 6 11 11 C 1.36934 * 125.65018 * 178.97432 * 10 9 7 12 12 H 1.07999 * 120.00259 * 347.81739 * 11 10 9 13 13 C 1.38817 * 120.00004 * 167.81208 * 11 10 9 14 14 N 1.31622 * 119.99582 * 342.68594 * 13 11 10 15 15 Si 1.86796 * 120.00066 * 162.69155 * 13 11 10 16 16 H 1.48501 * 109.47239 * 94.98442 * 15 13 11 17 17 H 1.48502 * 109.46868 * 214.98581 * 15 13 11 18 18 H 1.48500 * 109.46829 * 334.98392 * 15 13 11 19 19 C 1.47426 * 108.70134 * 358.94315 * 10 9 7 20 20 C 1.54906 * 104.83201 * 24.12559 * 19 10 9 21 21 H 1.09001 * 111.00703 * 81.06527 * 20 19 10 22 22 O 1.42900 * 111.00718 * 204.92088 * 20 19 10 23 23 C 1.46506 * 119.66510 * 179.97438 * 3 2 1 24 24 C 1.35531 * 119.04926 * 0.02562 * 23 3 2 25 25 C 1.41226 * 119.42772 * 359.97438 * 24 23 3 26 26 C 1.37904 * 132.97792 * 180.02562 * 25 24 23 27 27 N 1.33442 * 107.66696 * 180.02562 * 26 25 24 28 28 C 1.30748 * 109.93310 * 359.97438 * 27 26 25 29 29 N 1.35918 * 109.21186 * 359.77197 * 28 27 26 30 30 H 1.08995 * 109.46763 * 82.37791 * 1 2 3 31 31 H 1.09000 * 109.47163 * 202.37654 * 1 2 3 32 32 H 1.09003 * 109.47098 * 322.37859 * 1 2 3 33 33 H 0.96998 * 119.99734 * 359.97438 * 6 4 3 34 34 H 1.09000 * 109.88160 * 338.86453 * 9 7 6 35 35 H 1.09006 * 109.87924 * 100.02427 * 9 7 6 36 36 H 0.97006 * 119.99555 * 179.97438 * 14 13 11 37 37 H 1.08998 * 110.36802 * 142.96747 * 19 10 9 38 38 H 1.09001 * 110.36509 * 265.18040 * 19 10 9 39 39 H 0.96702 * 113.99775 * 292.19909 * 22 20 19 40 40 H 1.08000 * 120.47195 * 179.97438 * 23 3 2 41 41 H 1.07998 * 120.28623 * 180.02562 * 24 23 3 42 42 H 1.08005 * 126.16380 * 359.97438 * 26 25 24 43 43 H 1.08009 * 125.39514 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1834 1.1836 0.0000 4 6 1.4439 2.4600 -0.0006 5 8 0.2334 2.4613 -0.1155 6 7 2.1101 3.6248 0.1261 7 6 1.3756 4.8924 0.1261 8 1 0.4221 4.7841 0.6431 9 6 1.1605 5.3988 -1.3158 10 7 1.3466 6.8571 -1.2987 11 6 1.2609 7.6854 -2.3857 12 1 1.2366 7.2685 -3.3817 13 6 1.2051 9.0609 -2.2075 14 7 0.8935 9.5598 -1.0301 15 14 1.5721 10.2038 -3.6388 16 1 0.3006 10.5939 -4.2994 17 1 2.2626 11.4191 -3.1373 18 1 2.4448 9.5068 -4.6175 19 6 1.6401 7.2800 0.0828 20 6 2.2269 6.0202 0.7670 21 1 3.2825 5.8992 0.5235 22 8 2.0320 6.0679 2.1818 23 6 3.6485 1.1815 0.0006 24 6 4.3048 -0.0043 0.0006 25 6 3.5647 -1.2071 0.0005 26 6 3.9313 -2.5365 0.0010 27 7 2.8133 -3.2649 0.0002 28 6 1.7688 -2.4783 -0.0002 29 7 2.1837 -1.1840 0.0055 30 1 -0.3633 0.1363 -1.0186 31 1 -0.3633 -0.9503 0.3912 32 1 -0.3633 0.8140 0.6273 33 1 3.0757 3.6238 0.2180 34 1 1.8904 4.9397 -1.9826 35 1 0.1502 5.1578 -1.6464 36 1 0.8549 10.5211 -0.9055 37 1 2.3714 8.0883 0.0848 38 1 0.7257 7.5954 0.5853 39 1 2.5438 6.7575 2.6263 40 1 4.1975 2.1115 0.0002 41 1 5.3845 -0.0291 0.0014 42 1 4.9414 -2.9191 0.0011 43 1 0.7394 -2.8053 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077276273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:34 Heat of formation + Delta-G solvation = 41.881107 kcal Electronic energy + Delta-G solvation = -27837.481377 eV Core-core repulsion = 23885.185363 eV Total energy + Delta-G solvation = -3952.296014 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.06811 -40.12697 -38.22741 -37.03089 -35.22366 -34.73294 -33.83864 -32.02965 -31.56943 -29.24796 -28.51607 -27.73256 -26.98287 -24.75333 -23.77435 -22.97729 -21.54352 -21.02286 -20.66967 -20.09620 -18.49855 -17.51358 -17.05599 -16.81416 -16.51435 -16.35016 -15.87840 -15.35936 -14.91709 -14.78352 -14.51221 -14.05777 -14.00719 -13.88224 -13.43940 -13.34837 -13.25834 -12.96024 -12.75499 -12.43358 -12.17717 -11.83740 -11.76447 -11.60097 -11.34215 -11.03758 -10.94060 -10.86564 -10.62047 -10.26965 -10.04823 -9.92845 -9.85763 -9.53498 -9.44124 -8.90103 -8.68384 -7.82464 -6.94488 -5.88593 -3.20406 0.36472 0.71957 2.12419 2.48140 2.84814 3.16210 3.32829 3.33280 3.40129 3.42381 3.99155 4.22872 4.29321 4.35006 4.44722 4.47551 4.50362 4.60178 5.04375 5.10376 5.17368 5.21908 5.30984 5.37078 5.40832 5.46358 5.55231 5.62094 5.70877 5.81136 5.92023 5.97501 6.04385 6.17001 6.25498 6.35250 6.61431 6.78637 6.80716 7.07550 7.34754 7.49871 7.53089 7.63700 7.96122 8.09211 8.17717 9.03343 9.66963 10.32291 11.24798 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.022718 B = 0.002546 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.220042 B =10995.754424 C =11156.341433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.165 3.835 3 C -0.163 4.163 4 C 0.569 3.431 5 O -0.529 6.529 6 N -0.704 5.704 7 C 0.144 3.856 8 H 0.104 0.896 9 C 0.129 3.871 10 N -0.596 5.596 11 C -0.236 4.236 12 H 0.078 0.922 13 C -0.003 4.003 14 N -0.911 5.911 15 Si 0.909 3.091 16 H -0.287 1.287 17 H -0.289 1.289 18 H -0.279 1.279 19 C 0.150 3.850 20 C 0.068 3.932 21 H 0.062 0.938 22 O -0.564 6.564 23 C -0.094 4.094 24 C -0.087 4.087 25 C 0.009 3.991 26 C -0.022 4.022 27 N -0.452 5.452 28 C 0.151 3.849 29 N -0.375 5.375 30 H 0.095 0.905 31 H 0.065 0.935 32 H 0.122 0.878 33 H 0.398 0.602 34 H 0.031 0.969 35 H 0.036 0.964 36 H 0.255 0.745 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.378 0.622 40 H 0.142 0.858 41 H 0.151 0.849 42 H 0.182 0.818 43 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.928 -18.672 5.451 20.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.061 3.939 3 C -0.169 4.169 4 C 0.356 3.644 5 O -0.408 6.408 6 N -0.354 5.354 7 C 0.040 3.960 8 H 0.122 0.878 9 C 0.002 3.998 10 N -0.324 5.324 11 C -0.364 4.364 12 H 0.096 0.904 13 C -0.201 4.201 14 N -0.557 5.557 15 Si 0.738 3.262 16 H -0.215 1.215 17 H -0.215 1.215 18 H -0.205 1.205 19 C 0.024 3.976 20 C 0.008 3.992 21 H 0.080 0.920 22 O -0.368 6.368 23 C -0.115 4.115 24 C -0.106 4.106 25 C -0.098 4.098 26 C -0.174 4.174 27 N -0.166 5.166 28 C -0.124 4.124 29 N -0.048 5.048 30 H 0.114 0.886 31 H 0.084 0.916 32 H 0.140 0.860 33 H 0.233 0.767 34 H 0.049 0.951 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.064 0.936 39 H 0.225 0.775 40 H 0.160 0.840 41 H 0.169 0.831 42 H 0.199 0.801 43 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 5.478 -19.858 5.215 21.250 hybrid contribution 1.131 2.023 -0.609 2.396 sum 6.610 -17.835 4.606 19.570 Atomic orbital electron populations 1.21369 0.86220 1.04543 1.05861 1.20430 0.95548 0.82793 0.95151 1.20230 0.93685 0.92450 1.10566 1.17549 0.86869 0.83044 0.76925 1.90763 1.13371 1.86874 1.49812 1.45818 1.10683 1.05545 1.73396 1.22043 0.96160 0.80471 0.97323 0.87830 1.21655 0.99016 0.86673 0.92425 1.44289 1.82828 1.00435 1.04834 1.18982 1.44996 0.87043 0.85420 0.90395 1.24841 1.01110 0.96943 0.97170 1.70006 1.51478 1.11641 1.22530 0.86169 0.78136 0.80401 0.81480 1.21456 1.21500 1.20468 1.21919 0.99043 0.91813 0.84826 1.23546 0.97480 0.97551 0.80671 0.91971 1.86436 1.72016 1.58961 1.19420 1.22087 0.91607 0.98707 0.99110 1.20375 1.00198 0.88860 1.01212 1.19775 0.82396 0.97172 1.10502 1.22579 0.98114 0.87010 1.09743 1.69974 0.97916 1.33022 1.15649 1.25127 1.00649 0.76419 1.10187 1.43008 1.07600 1.06635 1.47580 0.88628 0.91648 0.86023 0.76680 0.95143 0.94614 0.93534 0.91868 0.93588 0.77501 0.84001 0.83101 0.80101 0.77062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 8.52 36.01 0.31 -0.92 16 2 C 0.17 1.86 6.83 -81.26 -0.55 1.31 16 3 C -0.16 -1.91 5.98 -103.47 -0.62 -2.53 16 4 C 0.57 8.06 7.68 -12.48 -0.10 7.97 16 5 O -0.53 -8.84 12.95 5.28 0.07 -8.77 16 6 N -0.70 -9.72 5.09 -53.07 -0.27 -9.99 16 7 C 0.14 2.53 2.97 -66.10 -0.20 2.33 16 8 H 0.10 2.02 7.69 -51.93 -0.40 1.62 16 9 C 0.13 2.67 6.99 -3.06 -0.02 2.65 16 10 N -0.60 -14.65 3.39 -170.07 -0.58 -15.22 16 11 C -0.24 -6.41 10.18 -15.06 -0.15 -6.56 16 12 H 0.08 2.06 7.89 -52.49 -0.41 1.65 16 13 C 0.00 -0.08 5.28 -17.43 -0.09 -0.17 16 14 N -0.91 -25.89 11.14 55.49 0.62 -25.27 16 15 Si 0.91 21.34 29.59 -169.99 -5.03 16.31 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 19 C 0.15 3.37 5.13 -2.53 -0.01 3.36 16 20 C 0.07 1.16 4.04 -24.58 -0.10 1.06 16 21 H 0.06 0.95 8.00 -51.93 -0.42 0.53 16 22 O -0.56 -8.82 13.47 -35.23 -0.47 -9.30 16 23 C -0.09 -0.88 9.72 -37.22 -0.36 -1.24 16 24 C -0.09 -0.75 10.09 -39.41 -0.40 -1.15 16 25 C 0.01 0.10 6.78 -84.02 -0.57 -0.47 16 26 C -0.02 -0.23 12.00 -16.97 -0.20 -0.43 16 27 N -0.45 -5.24 11.19 -13.78 -0.15 -5.39 16 28 C 0.15 1.53 12.09 -89.36 -1.08 0.45 16 29 N -0.38 -4.10 2.94 -57.74 -0.17 -4.27 16 30 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.06 0.48 7.13 -51.93 -0.37 0.11 16 32 H 0.12 1.44 5.83 -51.93 -0.30 1.13 16 33 H 0.40 4.36 6.65 -40.82 -0.27 4.09 16 34 H 0.03 0.61 8.03 -51.93 -0.42 0.19 16 35 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.06 1.52 7.35 -51.93 -0.38 1.14 16 38 H 0.05 1.17 7.98 -51.93 -0.41 0.75 16 39 H 0.38 4.35 9.12 45.56 0.42 4.77 16 40 H 0.14 0.98 6.62 -52.49 -0.35 0.63 16 41 H 0.15 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.18 1.31 8.06 -52.48 -0.42 0.89 16 43 H 0.21 1.38 7.54 -52.48 -0.40 0.99 16 LS Contribution 355.90 15.07 5.36 5.36 Total: -1.00 -33.90 355.90 -9.32 -43.21 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -4.54 Total: 7.68 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: -4.15 Total: 5.65 kcal Atomic # 7 Polarization: -59.59 SS G_CDS: -0.55 Total: -60.14 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.41 Total: -18.07 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.90 -9.32 -43.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077276273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.093 kcal (2) G-P(sol) polarization free energy of solvation -33.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.212 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds