Wall clock time and date at job start Tue Mar 31 2020 04:57:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.36323 * 119.74707 * 2 1 4 4 C 1.47518 * 120.16823 * 359.97438 * 3 2 1 5 5 O 1.21600 * 119.99915 * 353.76108 * 4 3 2 6 6 N 1.34780 * 120.00129 * 173.77080 * 4 3 2 7 7 C 1.46497 * 119.99933 * 180.02562 * 6 4 3 8 8 H 1.09000 * 110.64592 * 36.68374 * 7 6 4 9 9 C 1.54324 * 110.71936 * 273.53785 * 7 6 4 10 10 N 1.47021 * 107.27631 * 219.44539 * 9 7 6 11 11 C 1.36934 * 125.65018 * 178.97432 * 10 9 7 12 12 H 1.07999 * 120.00259 * 347.81739 * 11 10 9 13 13 C 1.38817 * 120.00004 * 167.81208 * 11 10 9 14 14 N 1.31622 * 119.99582 * 342.68594 * 13 11 10 15 15 Si 1.86796 * 120.00066 * 162.69155 * 13 11 10 16 16 H 1.48501 * 109.47239 * 94.98442 * 15 13 11 17 17 H 1.48502 * 109.46868 * 214.98581 * 15 13 11 18 18 H 1.48500 * 109.46829 * 334.98392 * 15 13 11 19 19 C 1.47426 * 108.70134 * 358.94315 * 10 9 7 20 20 C 1.54906 * 104.83201 * 24.12559 * 19 10 9 21 21 H 1.09001 * 111.00703 * 81.06527 * 20 19 10 22 22 O 1.42900 * 111.00718 * 204.92088 * 20 19 10 23 23 C 1.46506 * 119.66510 * 179.97438 * 3 2 1 24 24 C 1.35531 * 119.04926 * 0.02562 * 23 3 2 25 25 C 1.41226 * 119.42772 * 359.97438 * 24 23 3 26 26 C 1.37904 * 132.97792 * 180.02562 * 25 24 23 27 27 N 1.33442 * 107.66696 * 180.02562 * 26 25 24 28 28 C 1.30748 * 109.93310 * 359.97438 * 27 26 25 29 29 N 1.35918 * 109.21186 * 359.77197 * 28 27 26 30 30 H 1.08995 * 109.46763 * 82.37791 * 1 2 3 31 31 H 1.09000 * 109.47163 * 202.37654 * 1 2 3 32 32 H 1.09003 * 109.47098 * 322.37859 * 1 2 3 33 33 H 0.96998 * 119.99734 * 359.97438 * 6 4 3 34 34 H 1.09000 * 109.88160 * 338.86453 * 9 7 6 35 35 H 1.09006 * 109.87924 * 100.02427 * 9 7 6 36 36 H 0.97006 * 119.99555 * 179.97438 * 14 13 11 37 37 H 1.08998 * 110.36802 * 142.96747 * 19 10 9 38 38 H 1.09001 * 110.36509 * 265.18040 * 19 10 9 39 39 H 0.96702 * 113.99775 * 292.19909 * 22 20 19 40 40 H 1.08000 * 120.47195 * 179.97438 * 23 3 2 41 41 H 1.07998 * 120.28623 * 180.02562 * 24 23 3 42 42 H 1.08005 * 126.16380 * 359.97438 * 26 25 24 43 43 H 1.08009 * 125.39514 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1834 1.1836 0.0000 4 6 1.4439 2.4600 -0.0006 5 8 0.2334 2.4613 -0.1155 6 7 2.1101 3.6248 0.1261 7 6 1.3756 4.8924 0.1261 8 1 0.4221 4.7841 0.6431 9 6 1.1605 5.3988 -1.3158 10 7 1.3466 6.8571 -1.2987 11 6 1.2609 7.6854 -2.3857 12 1 1.2366 7.2685 -3.3817 13 6 1.2051 9.0609 -2.2075 14 7 0.8935 9.5598 -1.0301 15 14 1.5721 10.2038 -3.6388 16 1 0.3006 10.5939 -4.2994 17 1 2.2626 11.4191 -3.1373 18 1 2.4448 9.5068 -4.6175 19 6 1.6401 7.2800 0.0828 20 6 2.2269 6.0202 0.7670 21 1 3.2825 5.8992 0.5235 22 8 2.0320 6.0679 2.1818 23 6 3.6485 1.1815 0.0006 24 6 4.3048 -0.0043 0.0006 25 6 3.5647 -1.2071 0.0005 26 6 3.9313 -2.5365 0.0010 27 7 2.8133 -3.2649 0.0002 28 6 1.7688 -2.4783 -0.0002 29 7 2.1837 -1.1840 0.0055 30 1 -0.3633 0.1363 -1.0186 31 1 -0.3633 -0.9503 0.3912 32 1 -0.3633 0.8140 0.6273 33 1 3.0757 3.6238 0.2180 34 1 1.8904 4.9397 -1.9826 35 1 0.1502 5.1578 -1.6464 36 1 0.8549 10.5211 -0.9055 37 1 2.3714 8.0883 0.0848 38 1 0.7257 7.5954 0.5853 39 1 2.5438 6.7575 2.6263 40 1 4.1975 2.1115 0.0002 41 1 5.3845 -0.0291 0.0014 42 1 4.9414 -2.9191 0.0011 43 1 0.7394 -2.8053 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077276273.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:57:33 Heat of formation + Delta-G solvation = 17.961151 kcal Electronic energy + Delta-G solvation = -27838.518624 eV Core-core repulsion = 23885.185363 eV Total energy + Delta-G solvation = -3953.333261 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -43.82566 -41.29502 -39.62798 -37.94676 -36.69456 -35.91411 -34.85850 -33.68159 -32.58912 -30.47174 -29.71879 -28.97448 -28.23552 -26.41918 -24.86661 -23.70925 -22.68466 -22.23114 -21.97406 -21.48307 -19.42067 -19.02415 -18.38538 -18.12697 -17.34629 -17.25709 -17.11317 -16.69353 -16.18964 -15.99448 -15.65957 -15.51803 -15.11428 -14.81454 -14.62846 -14.56094 -14.25911 -14.07698 -14.00755 -13.84864 -13.58301 -13.19182 -13.06436 -12.83501 -12.72985 -12.61807 -12.46978 -12.12900 -11.89768 -11.67129 -11.54906 -11.40497 -11.12000 -10.83604 -10.71259 -10.43494 -10.10919 -8.94680 -8.55758 -7.95211 -5.29869 -0.47086 0.00996 1.31068 1.47130 1.47700 1.57462 1.58805 2.05508 2.05976 2.44800 2.47979 3.03955 3.22813 3.25338 3.46190 3.56861 3.59232 3.67474 3.78882 3.83791 3.88393 4.03514 4.15900 4.34658 4.41996 4.43930 4.52953 4.56370 4.58302 4.71387 4.84460 4.89541 4.94311 5.12666 5.16640 5.22745 5.41453 5.45977 5.46541 5.56872 5.59050 6.04387 6.10728 6.41998 6.77627 6.85219 6.99813 7.08930 7.66366 8.31848 9.16811 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.022718 B = 0.002546 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.220042 B =10995.754424 C =11156.341433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.160 3.840 3 C -0.173 4.173 4 C 0.568 3.432 5 O -0.561 6.561 6 N -0.692 5.692 7 C 0.160 3.840 8 H 0.080 0.920 9 C 0.130 3.870 10 N -0.615 5.615 11 C -0.253 4.253 12 H 0.079 0.921 13 C -0.055 4.055 14 N -0.941 5.941 15 Si 0.976 3.024 16 H -0.289 1.289 17 H -0.289 1.289 18 H -0.267 1.267 19 C 0.155 3.845 20 C 0.095 3.905 21 H 0.096 0.904 22 O -0.567 6.567 23 C -0.103 4.103 24 C -0.077 4.077 25 C -0.010 4.010 26 C -0.026 4.026 27 N -0.480 5.480 28 C 0.149 3.851 29 N -0.382 5.382 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.415 0.585 34 H 0.044 0.956 35 H 0.012 0.988 36 H 0.252 0.748 37 H 0.042 0.958 38 H 0.006 0.994 39 H 0.398 0.602 40 H 0.167 0.833 41 H 0.186 0.814 42 H 0.206 0.794 43 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.199 -20.085 5.384 22.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.055 3.945 3 C -0.180 4.180 4 C 0.357 3.643 5 O -0.441 6.441 6 N -0.344 5.344 7 C 0.054 3.946 8 H 0.098 0.902 9 C 0.004 3.996 10 N -0.343 5.343 11 C -0.381 4.381 12 H 0.096 0.904 13 C -0.250 4.250 14 N -0.588 5.588 15 Si 0.803 3.197 16 H -0.216 1.216 17 H -0.215 1.215 18 H -0.192 1.192 19 C 0.029 3.971 20 C 0.034 3.966 21 H 0.114 0.886 22 O -0.374 6.374 23 C -0.124 4.124 24 C -0.096 4.096 25 C -0.118 4.118 26 C -0.178 4.178 27 N -0.194 5.194 28 C -0.126 4.126 29 N -0.055 5.055 30 H 0.109 0.891 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.254 0.746 34 H 0.062 0.938 35 H 0.031 0.969 36 H 0.061 0.939 37 H 0.061 0.939 38 H 0.024 0.976 39 H 0.249 0.751 40 H 0.185 0.815 41 H 0.203 0.797 42 H 0.223 0.777 43 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 7.799 -21.301 5.163 23.264 hybrid contribution 0.364 2.351 -0.569 2.446 sum 8.163 -18.950 4.594 21.138 Atomic orbital electron populations 1.21288 0.85898 1.05174 1.05278 1.20515 0.95960 0.83043 0.94977 1.20116 0.95009 0.91086 1.11756 1.17930 0.86615 0.83798 0.75971 1.90763 1.14952 1.87399 1.51016 1.45539 1.11367 1.04083 1.73415 1.21528 0.95942 0.82233 0.94875 0.90157 1.21711 0.98001 0.84933 0.94958 1.44561 1.82782 1.01855 1.05069 1.19334 1.44543 0.87869 0.86386 0.90355 1.25656 1.01288 0.98314 0.99724 1.70175 1.52639 1.11546 1.24446 0.85129 0.77749 0.78190 0.78604 1.21605 1.21501 1.19189 1.21769 0.97033 0.93999 0.84325 1.23172 0.98481 0.93930 0.81026 0.88645 1.86409 1.72879 1.59841 1.18283 1.22310 0.90244 1.00190 0.99618 1.20785 1.01772 0.87710 0.99350 1.20232 0.82477 0.98088 1.10979 1.23080 0.98924 0.86970 1.08830 1.70001 0.98779 1.33818 1.16757 1.25751 1.01682 0.76117 1.09056 1.43103 1.07978 1.06594 1.47831 0.89073 0.89045 0.88024 0.74610 0.93789 0.96946 0.93940 0.93927 0.97561 0.75130 0.81523 0.79664 0.77710 0.74450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 8.52 71.24 0.61 -1.73 16 2 C 0.16 3.41 6.83 41.41 0.28 3.70 16 3 C -0.17 -3.80 5.98 -19.12 -0.11 -3.92 16 4 C 0.57 15.67 7.68 86.69 0.67 16.33 16 5 O -0.56 -19.03 12.95 -4.03 -0.05 -19.08 16 6 N -0.69 -17.99 5.09 -440.08 -2.24 -20.23 16 7 C 0.16 5.54 2.97 46.18 0.14 5.68 16 8 H 0.08 3.20 7.69 -2.39 -0.02 3.18 16 9 C 0.13 5.45 6.99 86.73 0.61 6.05 16 10 N -0.61 -30.77 3.39 -691.99 -2.35 -33.12 16 11 C -0.25 -13.89 10.18 84.04 0.86 -13.03 16 12 H 0.08 4.18 7.89 -2.91 -0.02 4.16 16 13 C -0.06 -3.05 5.28 84.86 0.45 -2.60 16 14 N -0.94 -54.87 11.14 21.65 0.24 -54.63 16 15 Si 0.98 44.19 29.59 68.60 2.03 46.22 16 16 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 17 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 18 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 19 C 0.15 7.11 5.13 86.85 0.45 7.55 16 20 C 0.09 3.11 4.04 31.99 0.13 3.24 16 21 H 0.10 2.59 8.00 -2.39 -0.02 2.57 16 22 O -0.57 -16.78 13.47 -148.98 -2.01 -18.79 16 23 C -0.10 -1.61 9.72 23.80 0.23 -1.38 16 24 C -0.08 -1.07 10.09 22.38 0.23 -0.85 16 25 C -0.01 -0.19 6.78 38.81 0.26 0.07 16 26 C -0.03 -0.48 12.00 84.37 1.01 0.53 16 27 N -0.48 -10.29 11.19 -197.51 -2.21 -12.50 16 28 C 0.15 2.75 12.09 179.91 2.17 4.92 16 29 N -0.38 -7.68 2.94 -336.60 -0.99 -8.67 16 30 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.09 1.22 7.13 -2.39 -0.02 1.20 16 32 H 0.10 2.45 5.83 -2.39 -0.01 2.43 16 33 H 0.42 7.83 6.65 -92.71 -0.62 7.22 16 34 H 0.04 1.72 8.03 -2.39 -0.02 1.71 16 35 H 0.01 0.57 8.14 -2.38 -0.02 0.56 16 36 H 0.25 14.17 8.31 -92.70 -0.77 13.40 16 37 H 0.04 2.10 7.35 -2.39 -0.02 2.08 16 38 H 0.01 0.34 7.98 -2.39 -0.02 0.32 16 39 H 0.40 8.32 9.12 -74.06 -0.68 7.64 16 40 H 0.17 1.64 6.62 -2.91 -0.02 1.62 16 41 H 0.19 1.18 8.06 -2.91 -0.02 1.16 16 42 H 0.21 2.40 8.06 -2.91 -0.02 2.38 16 43 H 0.24 2.63 7.54 -2.91 -0.02 2.61 16 Total: -1.00 -75.76 355.90 0.18 -75.58 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -0.22 Total: 20.65 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: 7.97 Total: 24.57 kcal Atomic # 7 Polarization: -121.61 SS G_CDS: -7.54 Total: -129.15 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: -2.06 Total: -37.87 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -75.76 0.18 -75.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077276273.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.544 kcal (2) G-P(sol) polarization free energy of solvation -75.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds