Wall clock time and date at job start Tue Mar 31 2020 05:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40576 * 120.13320 * 2 1 4 4 C 1.34849 * 120.34350 * 179.97438 * 3 2 1 5 5 N 1.36680 * 120.63859 * 359.95522 * 4 3 2 6 6 C 1.36200 * 132.29441 * 180.02562 * 5 4 3 7 7 C 1.36577 * 107.09061 * 180.02562 * 6 5 4 8 8 C 1.47591 * 125.91283 * 179.97438 * 7 6 5 9 9 O 1.21590 * 120.00287 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99863 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00000 * 179.97438 * 10 8 7 12 12 H 1.08996 * 110.64219 * 34.30660 * 11 10 8 13 13 C 1.54327 * 110.72535 * 271.15920 * 11 10 8 14 14 N 1.47020 * 107.27307 * 219.44520 * 13 11 10 15 15 C 1.36935 * 125.65060 * 178.90032 * 14 13 11 16 16 H 1.08005 * 119.99701 * 341.52548 * 15 14 13 17 17 C 1.38806 * 120.00231 * 161.51961 * 15 14 13 18 18 N 1.31618 * 120.00256 * 157.63823 * 17 15 14 19 19 Si 1.86804 * 120.00034 * 337.63779 * 17 15 14 20 20 H 1.48498 * 109.46956 * 84.53362 * 19 17 15 21 21 H 1.48495 * 109.47083 * 204.53861 * 19 17 15 22 22 H 1.48506 * 109.47034 * 324.53878 * 19 17 15 23 23 C 1.47429 * 108.70245 * 358.93967 * 14 13 11 24 24 C 1.55127 * 104.94391 * 24.00356 * 23 14 13 25 25 H 1.09002 * 110.93438 * 81.21375 * 24 23 14 26 26 O 1.42900 * 111.16021 * 205.13025 * 24 23 14 27 27 N 1.34582 * 108.16335 * 359.77695 * 7 6 5 28 28 C 1.32228 * 109.02515 * 0.36956 * 27 7 6 29 29 C 1.35888 * 120.13860 * 179.97438 * 2 1 3 30 30 H 1.08991 * 109.47124 * 270.02500 * 1 2 3 31 31 H 1.08997 * 109.46922 * 30.02656 * 1 2 3 32 32 H 1.08997 * 109.46848 * 150.01725 * 1 2 3 33 33 H 1.07997 * 119.83235 * 359.97438 * 3 2 1 34 34 H 1.07999 * 119.68268 * 179.97438 * 4 3 2 35 35 H 1.07992 * 126.44892 * 0.03379 * 6 5 4 36 36 H 0.96998 * 120.00186 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.87688 * 338.86261 * 13 11 10 38 38 H 1.08994 * 109.88127 * 99.86834 * 13 11 10 39 39 H 0.96997 * 120.00523 * 179.97438 * 18 17 15 40 40 H 1.08998 * 110.36490 * 142.96740 * 23 14 13 41 41 H 1.08996 * 110.36413 * 265.28837 * 23 14 13 42 42 H 0.96696 * 113.99924 * 292.16812 * 26 24 23 43 43 H 1.08001 * 120.32656 * 0.05312 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2127 1.2158 0.0000 4 6 3.5612 1.2207 0.0005 5 7 4.2621 0.0473 0.0020 6 6 5.5970 -0.2230 0.0032 7 6 5.7313 -1.5821 0.0038 8 6 7.0060 -2.3260 0.0046 9 8 8.0619 -1.7231 0.0043 10 7 6.9997 -3.6738 0.0056 11 6 8.2650 -4.4122 0.0059 12 1 9.0217 -3.8778 0.5802 13 6 8.7510 -4.6634 -1.4372 14 7 9.3109 -6.0222 -1.4789 15 6 9.8308 -6.6375 -2.5863 16 1 9.5937 -6.2654 -3.5721 17 6 10.6626 -7.7392 -2.4418 18 7 10.8096 -8.5879 -3.4371 19 14 11.5736 -8.0175 -0.8349 20 1 10.6863 -8.7285 0.1203 21 1 12.7857 -8.8370 -1.0885 22 1 11.9728 -6.7082 -0.2590 23 6 9.2190 -6.6129 -0.1313 24 6 8.0636 -5.8460 0.5638 25 1 7.0950 -6.2483 0.2669 26 8 8.2114 -5.8681 1.9850 27 7 4.5000 -2.1254 0.0079 28 6 3.6011 -1.1557 0.0018 29 6 2.1893 -1.1752 0.0005 30 1 -0.3633 0.0004 1.0276 31 1 -0.3633 0.8897 -0.5142 32 1 -0.3633 -0.8901 -0.5136 33 1 1.6722 2.1507 -0.0004 34 1 4.0926 2.1610 0.0001 35 1 6.3982 0.5011 0.0038 36 1 6.1574 -4.1548 0.0055 37 1 7.9125 -4.5865 -2.1293 38 1 9.5179 -3.9356 -1.7019 39 1 11.3912 -9.3576 -3.3363 40 1 8.9843 -7.6753 -0.1980 41 1 10.1515 -6.4631 0.4129 42 1 8.0941 -6.7433 2.3790 43 1 1.6569 -2.1148 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077322965.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:54 Heat of formation + Delta-G solvation = 41.349467 kcal Electronic energy + Delta-G solvation = -27308.418321 eV Core-core repulsion = 23356.099254 eV Total energy + Delta-G solvation = -3952.319068 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.15635 -39.72276 -38.31333 -37.64757 -35.32272 -34.65851 -34.04122 -31.92210 -31.13723 -30.37201 -28.88203 -27.74360 -27.25438 -24.87033 -23.86263 -22.90746 -22.10492 -21.22309 -20.37037 -19.94784 -18.46403 -17.49243 -17.27259 -16.92333 -16.55596 -16.37069 -15.92352 -15.40619 -15.00045 -14.86089 -14.67055 -14.35508 -14.13640 -13.91874 -13.74286 -13.56114 -13.03351 -13.01677 -12.80334 -12.56408 -12.27058 -12.09302 -11.94063 -11.92265 -11.36050 -11.25925 -11.06263 -10.82147 -10.62549 -10.42488 -10.11593 -10.01804 -9.61541 -9.42259 -9.23656 -8.88052 -8.63144 -8.19577 -7.08134 -5.95188 -3.26869 0.25616 0.83888 1.89028 2.12864 2.98769 3.22954 3.33005 3.49589 3.51915 3.53940 3.70650 4.03371 4.26860 4.27409 4.31171 4.54265 4.60959 4.75111 4.93089 4.97484 5.05566 5.08631 5.12990 5.22787 5.27192 5.36294 5.39092 5.45098 5.46603 5.59542 5.83423 5.87346 5.91259 6.02855 6.12320 6.37463 6.42086 6.52360 6.60342 6.65163 6.82892 7.33046 7.63731 7.73030 7.85614 8.29314 8.33265 8.81120 9.66754 10.12340 11.20517 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.024780 B = 0.002385 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.677691 B =11735.406493 C =11797.974408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.071 4.071 3 C -0.136 4.136 4 C 0.060 3.940 5 N -0.368 5.368 6 C -0.019 4.019 7 C 0.013 3.987 8 C 0.601 3.399 9 O -0.535 6.535 10 N -0.696 5.696 11 C 0.141 3.859 12 H 0.106 0.894 13 C 0.129 3.871 14 N -0.604 5.604 15 C -0.242 4.242 16 H 0.095 0.905 17 C 0.022 3.978 18 N -0.906 5.906 19 Si 0.882 3.118 20 H -0.286 1.286 21 H -0.301 1.301 22 H -0.274 1.274 23 C 0.086 3.914 24 C 0.082 3.918 25 H 0.075 0.925 26 O -0.560 6.560 27 N -0.464 5.464 28 C 0.229 3.771 29 C -0.079 4.079 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.152 0.848 34 H 0.167 0.833 35 H 0.197 0.803 36 H 0.409 0.591 37 H 0.042 0.958 38 H 0.045 0.955 39 H 0.264 0.736 40 H 0.066 0.934 41 H 0.039 0.961 42 H 0.378 0.622 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.393 19.705 10.173 31.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.077 4.077 3 C -0.157 4.157 4 C -0.061 4.061 5 N -0.040 5.040 6 C -0.154 4.154 7 C -0.120 4.120 8 C 0.386 3.614 9 O -0.411 6.411 10 N -0.346 5.346 11 C 0.036 3.964 12 H 0.124 0.876 13 C 0.002 3.998 14 N -0.332 5.332 15 C -0.368 4.368 16 H 0.113 0.887 17 C -0.176 4.176 18 N -0.550 5.550 19 Si 0.712 3.288 20 H -0.213 1.213 21 H -0.229 1.229 22 H -0.200 1.200 23 C -0.040 4.040 24 C 0.022 3.978 25 H 0.092 0.908 26 O -0.365 6.365 27 N -0.186 5.186 28 C -0.016 4.016 29 C -0.099 4.099 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.170 0.830 34 H 0.184 0.816 35 H 0.214 0.786 36 H 0.244 0.756 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.056 0.944 42 H 0.225 0.775 43 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -21.469 19.752 9.930 30.817 hybrid contribution 0.390 -0.178 0.880 0.979 sum -21.079 19.574 10.810 30.729 Atomic orbital electron populations 1.20777 0.89513 1.03548 1.02968 1.19766 0.97139 0.91967 0.98825 1.20759 0.92072 0.99388 1.03464 1.21667 0.93045 0.88679 1.02711 1.42766 1.07181 1.07837 1.46195 1.22625 0.83485 0.97911 1.11338 1.20660 0.92559 0.91057 1.07694 1.16849 0.86055 0.82097 0.76426 1.90817 1.30960 1.68714 1.50615 1.45710 1.09911 1.05615 1.73380 1.22043 0.85924 0.90780 0.97610 0.87601 1.21729 0.97409 0.88051 0.92589 1.44580 1.72269 1.10629 1.05712 1.18651 1.23405 1.09800 0.84984 0.88734 1.25008 0.98907 0.96835 0.96899 1.69836 1.39929 1.12802 1.32434 0.86998 0.79934 0.77566 0.84281 1.21313 1.22879 1.20022 1.22633 0.95907 0.97862 0.87602 1.23316 0.98666 0.95461 0.80397 0.90762 1.86472 1.95107 1.35174 1.19748 1.70836 0.97921 1.28856 1.20943 1.20920 0.94387 0.80163 1.06142 1.20163 0.87915 0.99800 1.02063 0.90492 0.90949 0.90801 0.83033 0.81586 0.78627 0.75571 0.94021 0.93739 0.92639 0.91624 0.94384 0.77472 0.82958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.36 10.02 36.01 0.36 0.00 16 2 C -0.07 -0.42 5.88 -104.58 -0.62 -1.04 16 3 C -0.14 -0.67 9.67 -39.90 -0.39 -1.06 16 4 C 0.06 0.38 10.93 -16.59 -0.18 0.20 16 5 N -0.37 -3.75 2.93 -62.38 -0.18 -3.94 16 6 C -0.02 -0.22 11.47 -16.21 -0.19 -0.41 16 7 C 0.01 0.19 6.94 -83.45 -0.58 -0.38 16 8 C 0.60 10.21 7.82 -12.44 -0.10 10.11 16 9 O -0.53 -10.40 16.55 5.29 0.09 -10.31 16 10 N -0.70 -11.49 5.11 -53.05 -0.27 -11.76 16 11 C 0.14 2.65 3.00 -66.09 -0.20 2.45 16 12 H 0.11 2.14 7.62 -51.93 -0.40 1.75 16 13 C 0.13 2.77 7.00 -3.06 -0.02 2.75 16 14 N -0.60 -15.03 3.21 -169.94 -0.54 -15.57 16 15 C -0.24 -6.97 10.57 -15.06 -0.16 -7.13 16 16 H 0.10 2.89 8.06 -52.48 -0.42 2.46 16 17 C 0.02 0.65 5.43 -17.43 -0.09 0.56 16 18 N -0.91 -28.11 13.97 55.49 0.78 -27.33 16 19 Si 0.88 22.85 24.27 -169.99 -4.13 18.72 16 20 H -0.29 -6.99 6.49 56.52 0.37 -6.62 16 21 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 22 H -0.27 -7.16 6.66 56.52 0.38 -6.78 16 23 C 0.09 1.90 4.44 -2.41 -0.01 1.89 16 24 C 0.08 1.46 4.06 -24.46 -0.10 1.36 16 25 H 0.07 1.20 8.00 -51.93 -0.42 0.78 16 26 O -0.56 -8.98 13.48 -35.23 -0.47 -9.46 16 27 N -0.46 -6.58 11.01 -9.35 -0.10 -6.68 16 28 C 0.23 2.69 7.79 -156.05 -1.22 1.47 16 29 C -0.08 -0.67 9.75 -39.30 -0.38 -1.05 16 30 H 0.08 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.15 8.10 -51.93 -0.42 -0.27 16 32 H 0.07 0.22 8.08 -51.93 -0.42 -0.20 16 33 H 0.15 0.27 8.06 -52.49 -0.42 -0.15 16 34 H 0.17 0.51 8.06 -52.49 -0.42 0.09 16 35 H 0.20 1.86 8.06 -52.49 -0.42 1.44 16 36 H 0.41 6.11 8.24 -40.82 -0.34 5.77 16 37 H 0.04 0.89 8.03 -51.93 -0.42 0.47 16 38 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 39 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 40 H 0.07 1.48 6.63 -51.93 -0.34 1.13 16 41 H 0.04 0.89 5.58 -51.93 -0.29 0.60 16 42 H 0.38 4.34 9.12 45.56 0.42 4.76 16 43 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 359.84 15.07 5.42 5.42 Total: -1.00 -36.99 359.84 -8.06 -45.05 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -4.78 Total: 6.15 kcal Atomic # 6 Polarization: 13.58 SS G_CDS: -3.87 Total: 9.72 kcal Atomic # 7 Polarization: -64.97 SS G_CDS: -0.33 Total: -65.29 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.39 Total: -19.77 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.13 Total: 18.72 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -36.99 -8.06 -45.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077322965.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.403 kcal (2) G-P(sol) polarization free energy of solvation -36.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds