Wall clock time and date at job start Tue Mar 31 2020 05:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40576 * 120.13320 * 2 1 4 4 C 1.34849 * 120.34350 * 179.97438 * 3 2 1 5 5 N 1.36680 * 120.63859 * 359.95522 * 4 3 2 6 6 C 1.36200 * 132.29441 * 180.02562 * 5 4 3 7 7 C 1.36577 * 107.09061 * 180.02562 * 6 5 4 8 8 C 1.47591 * 125.91283 * 179.97438 * 7 6 5 9 9 O 1.21590 * 120.00287 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99863 * 179.97438 * 8 7 6 11 11 C 1.46497 * 120.00000 * 179.97438 * 10 8 7 12 12 H 1.08996 * 110.64219 * 34.30660 * 11 10 8 13 13 C 1.54327 * 110.72535 * 271.15920 * 11 10 8 14 14 N 1.47020 * 107.27307 * 219.44520 * 13 11 10 15 15 C 1.36935 * 125.65060 * 178.90032 * 14 13 11 16 16 H 1.08005 * 119.99701 * 341.52548 * 15 14 13 17 17 C 1.38806 * 120.00231 * 161.51961 * 15 14 13 18 18 N 1.31618 * 120.00256 * 157.63823 * 17 15 14 19 19 Si 1.86804 * 120.00034 * 337.63779 * 17 15 14 20 20 H 1.48498 * 109.46956 * 84.53362 * 19 17 15 21 21 H 1.48495 * 109.47083 * 204.53861 * 19 17 15 22 22 H 1.48506 * 109.47034 * 324.53878 * 19 17 15 23 23 C 1.47429 * 108.70245 * 358.93967 * 14 13 11 24 24 C 1.55127 * 104.94391 * 24.00356 * 23 14 13 25 25 H 1.09002 * 110.93438 * 81.21375 * 24 23 14 26 26 O 1.42900 * 111.16021 * 205.13025 * 24 23 14 27 27 N 1.34582 * 108.16335 * 359.77695 * 7 6 5 28 28 C 1.32228 * 109.02515 * 0.36956 * 27 7 6 29 29 C 1.35888 * 120.13860 * 179.97438 * 2 1 3 30 30 H 1.08991 * 109.47124 * 270.02500 * 1 2 3 31 31 H 1.08997 * 109.46922 * 30.02656 * 1 2 3 32 32 H 1.08997 * 109.46848 * 150.01725 * 1 2 3 33 33 H 1.07997 * 119.83235 * 359.97438 * 3 2 1 34 34 H 1.07999 * 119.68268 * 179.97438 * 4 3 2 35 35 H 1.07992 * 126.44892 * 0.03379 * 6 5 4 36 36 H 0.96998 * 120.00186 * 0.02562 * 10 8 7 37 37 H 1.09000 * 109.87688 * 338.86261 * 13 11 10 38 38 H 1.08994 * 109.88127 * 99.86834 * 13 11 10 39 39 H 0.96997 * 120.00523 * 179.97438 * 18 17 15 40 40 H 1.08998 * 110.36490 * 142.96740 * 23 14 13 41 41 H 1.08996 * 110.36413 * 265.28837 * 23 14 13 42 42 H 0.96696 * 113.99924 * 292.16812 * 26 24 23 43 43 H 1.08001 * 120.32656 * 0.05312 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2127 1.2158 0.0000 4 6 3.5612 1.2207 0.0005 5 7 4.2621 0.0473 0.0020 6 6 5.5970 -0.2230 0.0032 7 6 5.7313 -1.5821 0.0038 8 6 7.0060 -2.3260 0.0046 9 8 8.0619 -1.7231 0.0043 10 7 6.9997 -3.6738 0.0056 11 6 8.2650 -4.4122 0.0059 12 1 9.0217 -3.8778 0.5802 13 6 8.7510 -4.6634 -1.4372 14 7 9.3109 -6.0222 -1.4789 15 6 9.8308 -6.6375 -2.5863 16 1 9.5937 -6.2654 -3.5721 17 6 10.6626 -7.7392 -2.4418 18 7 10.8096 -8.5879 -3.4371 19 14 11.5736 -8.0175 -0.8349 20 1 10.6863 -8.7285 0.1203 21 1 12.7857 -8.8370 -1.0885 22 1 11.9728 -6.7082 -0.2590 23 6 9.2190 -6.6129 -0.1313 24 6 8.0636 -5.8460 0.5638 25 1 7.0950 -6.2483 0.2669 26 8 8.2114 -5.8681 1.9850 27 7 4.5000 -2.1254 0.0079 28 6 3.6011 -1.1557 0.0018 29 6 2.1893 -1.1752 0.0005 30 1 -0.3633 0.0004 1.0276 31 1 -0.3633 0.8897 -0.5142 32 1 -0.3633 -0.8901 -0.5136 33 1 1.6722 2.1507 -0.0004 34 1 4.0926 2.1610 0.0001 35 1 6.3982 0.5011 0.0038 36 1 6.1574 -4.1548 0.0055 37 1 7.9125 -4.5865 -2.1293 38 1 9.5179 -3.9356 -1.7019 39 1 11.3912 -9.3576 -3.3363 40 1 8.9843 -7.6753 -0.1980 41 1 10.1515 -6.4631 0.4129 42 1 8.0941 -6.7433 2.3790 43 1 1.6569 -2.1148 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077322965.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:53 Heat of formation + Delta-G solvation = 12.029109 kcal Electronic energy + Delta-G solvation = -27309.689747 eV Core-core repulsion = 23356.099254 eV Total energy + Delta-G solvation = -3953.590494 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 330.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.92677 -41.10561 -39.62572 -38.50550 -36.86240 -35.72172 -35.21538 -33.96823 -31.93587 -31.02257 -30.49451 -29.35178 -28.02762 -26.42577 -24.94270 -23.81687 -22.98491 -22.74525 -21.84861 -21.29683 -19.37545 -19.06451 -18.63179 -18.09840 -17.66641 -17.40847 -17.18924 -16.57809 -16.13256 -16.02121 -15.71937 -15.57495 -15.41748 -15.17907 -14.93269 -14.75728 -14.54092 -14.23753 -14.00922 -13.70773 -13.39038 -13.29870 -13.02815 -12.94436 -12.73982 -12.67152 -12.51299 -12.36432 -11.71338 -11.67094 -11.62669 -11.61881 -11.34560 -11.08984 -10.82240 -10.31920 -9.91193 -9.17290 -8.89400 -8.22542 -5.52438 -0.36415 0.15173 0.93683 1.26193 1.38456 1.39582 1.47681 1.99120 2.22636 2.36697 2.50760 2.76712 2.93150 3.06175 3.33562 3.39199 3.58344 3.69705 3.77210 3.81220 3.93405 4.07880 4.13812 4.21941 4.26306 4.37900 4.44780 4.65446 4.68568 4.79275 4.80936 4.83790 4.87930 4.89514 5.01316 5.18670 5.27723 5.30599 5.41813 5.55556 5.56767 5.91954 6.04139 6.30683 6.61343 6.64771 6.77559 7.03938 7.44161 7.97306 8.96676 Molecular weight = 330.15amu Principal moments of inertia in cm(-1) A = 0.024780 B = 0.002385 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1129.677691 B =11735.406493 C =11797.974408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.048 4.048 3 C -0.127 4.127 4 C 0.047 3.953 5 N -0.369 5.369 6 C -0.014 4.014 7 C -0.021 4.021 8 C 0.601 3.399 9 O -0.568 6.568 10 N -0.689 5.689 11 C 0.153 3.847 12 H 0.092 0.908 13 C 0.130 3.870 14 N -0.619 5.619 15 C -0.241 4.241 16 H 0.061 0.939 17 C -0.030 4.030 18 N -0.950 5.950 19 Si 0.945 3.055 20 H -0.258 1.258 21 H -0.304 1.304 22 H -0.279 1.279 23 C 0.080 3.920 24 C 0.106 3.894 25 H 0.099 0.901 26 O -0.562 6.562 27 N -0.501 5.501 28 C 0.221 3.779 29 C -0.115 4.115 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.194 0.806 34 H 0.201 0.799 35 H 0.214 0.786 36 H 0.417 0.583 37 H 0.042 0.958 38 H 0.028 0.972 39 H 0.265 0.735 40 H 0.064 0.936 41 H 0.031 0.969 42 H 0.401 0.599 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.352 21.883 12.376 35.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.054 4.054 3 C -0.147 4.147 4 C -0.073 4.073 5 N -0.040 5.040 6 C -0.150 4.150 7 C -0.153 4.153 8 C 0.388 3.612 9 O -0.447 6.447 10 N -0.339 5.339 11 C 0.047 3.953 12 H 0.110 0.890 13 C 0.004 3.996 14 N -0.347 5.347 15 C -0.370 4.370 16 H 0.079 0.921 17 C -0.226 4.226 18 N -0.596 5.596 19 Si 0.773 3.227 20 H -0.183 1.183 21 H -0.232 1.232 22 H -0.205 1.205 23 C -0.046 4.046 24 C 0.045 3.955 25 H 0.116 0.884 26 O -0.369 6.369 27 N -0.223 5.223 28 C -0.026 4.026 29 C -0.135 4.135 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.094 0.906 33 H 0.211 0.789 34 H 0.218 0.782 35 H 0.231 0.769 36 H 0.254 0.746 37 H 0.060 0.940 38 H 0.046 0.954 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.049 0.951 42 H 0.252 0.748 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -24.484 21.930 12.179 35.053 hybrid contribution 1.066 -0.654 0.147 1.259 sum -23.418 21.277 12.326 33.956 Atomic orbital electron populations 1.20899 0.87183 1.04737 1.04058 1.20254 0.98743 0.91470 0.94964 1.21350 0.91661 1.00622 1.01024 1.22474 0.93938 0.88561 1.02313 1.42913 1.06550 1.08733 1.45836 1.22804 0.84731 0.97206 1.10296 1.20347 0.91862 0.92077 1.11030 1.17216 0.86734 0.82012 0.75274 1.90780 1.32406 1.69266 1.52212 1.45559 1.09337 1.05675 1.73376 1.21676 0.86632 0.91753 0.95258 0.89014 1.21745 0.96743 0.86207 0.94920 1.44607 1.72026 1.12095 1.05979 1.18555 1.23405 1.09704 0.85298 0.92088 1.25622 0.99734 0.96753 1.00462 1.69948 1.41085 1.13692 1.34855 0.85977 0.78644 0.77315 0.80761 1.18289 1.23186 1.20456 1.22754 0.97376 0.98247 0.86216 1.22984 0.97844 0.93505 0.81173 0.88370 1.86447 1.95018 1.37300 1.18176 1.70711 0.98065 1.30340 1.23163 1.21385 0.95359 0.80379 1.05439 1.20388 0.86669 1.01405 1.05046 0.89223 0.88880 0.90588 0.78856 0.78177 0.76937 0.74567 0.94008 0.95364 0.92548 0.91819 0.95114 0.74776 0.82422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.27 10.02 71.24 0.71 0.44 16 2 C -0.05 -0.41 5.88 -19.84 -0.12 -0.53 16 3 C -0.13 -0.70 9.67 22.06 0.21 -0.49 16 4 C 0.05 0.44 10.93 83.16 0.91 1.35 16 5 N -0.37 -7.02 2.93 -351.26 -1.03 -8.05 16 6 C -0.01 -0.33 11.47 83.63 0.96 0.63 16 7 C -0.02 -0.64 6.94 40.80 0.28 -0.36 16 8 C 0.60 21.02 7.82 86.71 0.68 21.69 16 9 O -0.57 -22.84 16.55 -4.00 -0.07 -22.91 16 10 N -0.69 -23.02 5.11 -440.01 -2.25 -25.27 16 11 C 0.15 5.74 3.00 46.18 0.14 5.88 16 12 H 0.09 3.76 7.62 -2.39 -0.02 3.74 16 13 C 0.13 5.77 7.00 86.73 0.61 6.38 16 14 N -0.62 -31.32 3.21 -691.56 -2.22 -33.53 16 15 C -0.24 -14.41 10.57 84.03 0.89 -13.52 16 16 H 0.06 3.95 8.06 -2.91 -0.02 3.92 16 17 C -0.03 -1.83 5.43 84.86 0.46 -1.37 16 18 N -0.95 -60.47 13.97 21.65 0.30 -60.17 16 19 Si 0.95 47.59 24.27 68.60 1.66 49.25 16 20 H -0.26 -11.70 6.49 99.48 0.65 -11.06 16 21 H -0.30 -15.34 7.11 99.48 0.71 -14.63 16 22 H -0.28 -14.10 6.66 99.48 0.66 -13.44 16 23 C 0.08 3.42 4.44 86.93 0.39 3.81 16 24 C 0.11 3.58 4.06 32.06 0.13 3.72 16 25 H 0.10 2.92 8.00 -2.39 -0.02 2.90 16 26 O -0.56 -16.54 13.48 -148.98 -2.01 -18.55 16 27 N -0.50 -14.48 11.01 -183.49 -2.02 -16.50 16 28 C 0.22 5.07 7.79 134.21 1.05 6.11 16 29 C -0.11 -1.78 9.75 22.45 0.22 -1.57 16 30 H 0.09 0.08 8.14 -2.39 -0.02 0.07 16 31 H 0.09 -0.10 8.10 -2.39 -0.02 -0.12 16 32 H 0.08 0.21 8.08 -2.39 -0.02 0.19 16 33 H 0.19 -0.52 8.06 -2.91 -0.02 -0.55 16 34 H 0.20 0.37 8.06 -2.91 -0.02 0.35 16 35 H 0.21 3.93 8.06 -2.91 -0.02 3.91 16 36 H 0.42 12.49 8.24 -92.71 -0.76 11.73 16 37 H 0.04 1.84 8.03 -2.39 -0.02 1.82 16 38 H 0.03 1.33 8.14 -2.39 -0.02 1.32 16 39 H 0.27 15.94 8.31 -92.71 -0.77 15.17 16 40 H 0.06 2.76 6.63 -2.39 -0.02 2.74 16 41 H 0.03 1.40 5.58 -2.39 -0.01 1.39 16 42 H 0.40 7.82 9.12 -74.06 -0.68 7.15 16 43 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 Total: -1.00 -84.31 359.84 -0.58 -84.89 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -0.48 Total: 18.67 kcal Atomic # 6 Polarization: 24.65 SS G_CDS: 7.52 Total: 32.17 kcal Atomic # 7 Polarization: -136.31 SS G_CDS: -7.21 Total: -143.53 kcal Atomic # 8 Polarization: -39.38 SS G_CDS: -2.07 Total: -41.46 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 1.66 Total: 49.25 kcal Total: -84.31 -0.58 -84.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077322965.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.920 kcal (2) G-P(sol) polarization free energy of solvation -84.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds